Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Forward (+)

38749063 .. 38754243

Gene Structure 5181 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24814

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1131 bp

ATGGAGAGCAGACTCTCCGCCTCTCTTGGCCTCTCCTCTCCAAACCCAGACCACCACCACCACCACCACCGCCGCCACCACTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACCACCACCAAATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCGTCCGAAGTCTACGCCAACGCCTTCGACGCCGTCCTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCCTGGCAGGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAACCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCCTTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGCTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGCGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGCTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCACAGTGCCTGCTTTTCCGCATTGGGGTACTTTGCTTTCGAGACGGCTAGGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTGATGCTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

376

Amino Acids

40.37

Weight (kDa)

9.52

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	89 - 170	7e-19	Mitochondrial carrier protein
Mito_carr	PF00153	182 - 259	1.7e-12	Mitochondrial carrier protein
Mito_carr	PF00153	267 - 358	2.3e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	488, 634
Acc36I	ACCTGC	3 cut(s)	488, 624, 634
AccB1I	GGYRCC	5 cut(s)	257, 476, 551, 586, 827
AccB7I	CCANNNNNTGG	1 cut(s)	180
AccBSI	CCGCTC	1 cut(s)	244
AccI	GTMKAC	2 cut(s)	357, 468
AccII	CGCG	2 cut(s)	347, 770
AclWI	GGATC	2 cut(s)	523, 652
AcoI	YGGCCR	2 cut(s)	576, 834
AcuI	CTGAAG	1 cut(s)	674
AcyI	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
AfaI	GTAC	2 cut(s)	758, 1043
AfiI	CCNNNNNNNGG	6 cut(s)	180, 205, 400, 548, 633, 1038
AgsI	TTSAA	2 cut(s)	763, 1078
AjnI	CCWGG	2 cut(s)	638, 789
AluBI	AGCT	4 cut(s)	331, 598, 741, 842
AluI	AGCT	4 cut(s)	331, 598, 741, 842
Alw21I	GWGCWC	1 cut(s)	600
Alw26I	GTCTC	3 cut(s)	574, 938, 1049
AlwI	GGATC	2 cut(s)	523, 652
AlwNI	CAGNNNCTG	3 cut(s)	639, 961, 1023
ApaI	GGGCCC	1 cut(s)	250
ApeKI	GCWGC	2 cut(s)	607, 917
AspLEI	GCGC	4 cut(s)	260, 347, 554, 830
AspS9I	GGNCC	8 cut(s)	183, 246, 247, 624, 636, 682, 793, 1001
AsuC2I	CCSGG	2 cut(s)	622, 730
AsuHPI	GGTGA	4 cut(s)	106, 280, 961, 1127
AvaII	GGWCC	1 cut(s)	636
BaeGI	GKGCMC	2 cut(s)	250, 591
BanI	GGYRCC	5 cut(s)	257, 476, 551, 586, 827
BanII	GRGCYC	3 cut(s)	250, 600, 807
BbsI	GAAGAC	2 cut(s)	229, 887
Bbv12I	GWGCWC	1 cut(s)	600
BbvI	GCAGC	2 cut(s)	619, 904
BccI	CCATC	2 cut(s)	326, 481
BceAI	ACGGC	5 cut(s)	362, 419, 449, 688, 1074
BciT130I	CCWGG	2 cut(s)	640, 791
BcnI	CCSGG	2 cut(s)	622, 730
BcoDI	GTCTC	3 cut(s)	574, 938, 1049
BfaI	CTAG	1 cut(s)	1062
BfoI	RGCGCY	3 cut(s)	261, 555, 831
BfuAI	ACCTGC	3 cut(s)	488, 624, 634
BmcAI	AGTACT	1 cut(s)	758
Bme1390I	CCNGG	4 cut(s)	622, 640, 730, 791
Bme18I	GGWCC	1 cut(s)	636
BmgT120I	GGNCC	8 cut(s)	183, 246, 247, 624, 636, 682, 793, 1001
BmrFI	CCNGG	4 cut(s)	622, 640, 730, 791
BmsI	GCATC	4 cut(s)	282, 435, 603, 1108
BpiI	GAAGAC	2 cut(s)	229, 887
BpmI	CTGGAG	1 cut(s)	317
BpuEI	CTTGAG	2 cut(s)	368, 757
BpuMI	CCSGG	2 cut(s)	622, 730
BsaBI	GATNNNNATC	1 cut(s)	533
BsaHI	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
BsaJI	CCNNGG	9 cut(s)	204, 399, 555, 591, 621, 729, 768, 831, 1004
BsaXI	ACNNNNNCTCC	2 cut(s)	110, 140
Bsc4I	CCNNNNNNNGG	6 cut(s)	180, 205, 400, 548, 633, 1038
Bse118I	RCCGGY	2 cut(s)	260, 548
Bse8I	GATNNNNATC	1 cut(s)	533
BseBI	CCWGG	2 cut(s)	640, 791
BseDI	CCNNGG	9 cut(s)	204, 399, 555, 591, 621, 729, 768, 831, 1004
BseGI	GGATG	4 cut(s)	144, 534, 618, 877
BseJI	GATNNNNATC	1 cut(s)	533
BseLI	CCNNNNNNNGG	6 cut(s)	180, 205, 400, 548, 633, 1038
BseMII	CTCAG	3 cut(s)	727, 767, 911
BseRI	GAGGAG	1 cut(s)	25
BseSI	GKGCMC	2 cut(s)	250, 591
BseXI	GCAGC	2 cut(s)	619, 904
BsgI	GTGCAG	1 cut(s)	947
Bsh1236I	CGCG	2 cut(s)	347, 770
BshNI	GGYRCC	5 cut(s)	257, 476, 551, 586, 827
BsiHKAI	GWGCWC	1 cut(s)	600
BsiSI	CCGG	7 cut(s)	261, 279, 549, 621, 729, 837, 1124
BslI	CCNNNNNNNGG	6 cut(s)	180, 205, 400, 548, 633, 1038
BsmAI	GTCTC	3 cut(s)	574, 938, 1049
BsmBI	CGTCTC	3 cut(s)	574, 938, 1049
Bsp120I	GGGCCC	1 cut(s)	246
Bsp1286I	GDGCHC	4 cut(s)	250, 591, 600, 807
Bsp143I	GATC	2 cut(s)	528, 657
Bsp19I	CCATGG	1 cut(s)	555
BspCNI	CTCAG	3 cut(s)	726, 768, 910
BspFNI	CGCG	2 cut(s)	347, 770
BspMI	ACCTGC	3 cut(s)	488, 624, 634
BspPI	GGATC	2 cut(s)	523, 652
BspT107I	GGYRCC	5 cut(s)	257, 476, 551, 586, 827
BsrBI	CCGCTC	1 cut(s)	244
BsrFI	RCCGGY	2 cut(s)	260, 548
BssAI	RCCGGY	2 cut(s)	260, 548
BssECI	CCNNGG	9 cut(s)	204, 399, 555, 591, 621, 729, 768, 831, 1004
BssMI	GATC	2 cut(s)	528, 657
BssNI	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
BssT1I	CCWWGG	5 cut(s)	204, 399, 555, 591, 831
Bst2UI	CCWGG	2 cut(s)	640, 791
Bst4CI	ACNGT	2 cut(s)	949, 1019
Bst6I	CTCTTC	3 cut(s)	116, 577, 751
BstACI	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
BstAPI	GCANNNNNTGC	2 cut(s)	613, 649
BstC8I	GCNNGC	9 cut(s)	200, 246, 262, 550, 618, 694, 726, 1024, 1068
BstDEI	CTNAG	3 cut(s)	713, 776, 897
BstDSI	CCRYGG	2 cut(s)	555, 768
BstF5I	GGATG	4 cut(s)	144, 534, 618, 877
BstFNI	CGCG	2 cut(s)	347, 770
BstH2I	RGCGCY	3 cut(s)	261, 555, 831
BstHHI	GCGC	4 cut(s)	260, 347, 554, 830
BstKTI	GATC	2 cut(s)	531, 660
BstMAI	GTCTC	3 cut(s)	574, 938, 1049
BstMBI	GATC	2 cut(s)	528, 657
BstNI	CCWGG	2 cut(s)	640, 791
BstSCI	CCNGG	4 cut(s)	620, 638, 728, 789
BstSLI	GKGCMC	2 cut(s)	250, 591
BstUI	CGCG	2 cut(s)	347, 770
BstV1I	GCAGC	2 cut(s)	619, 904
BstV2I	GAAGAC	2 cut(s)	229, 887
BstX2I	RGATCY	1 cut(s)	657
BstYI	RGATCY	1 cut(s)	657
BtgI	CCRYGG	2 cut(s)	555, 768
BtgZI	GCGATG	1 cut(s)	259
BtsCI	GGATG	4 cut(s)	144, 534, 618, 877
BtsIMutI	CAGTG	1 cut(s)	1024
BveI	ACCTGC	3 cut(s)	488, 624, 634
Cac8I	GCNNGC	9 cut(s)	200, 246, 262, 550, 618, 694, 726, 1024, 1068
CaiI	CAGNNNCTG	3 cut(s)	639, 961, 1023
CfoI	GCGC	4 cut(s)	260, 347, 554, 830
Cfr10I	RCCGGY	2 cut(s)	260, 548
Cfr13I	GGNCC	8 cut(s)	183, 246, 247, 624, 636, 682, 793, 1001
Cfr42I	CCGCGG	1 cut(s)	771
CseI	GACGC	3 cut(s)	336, 383, 871
Csp6I	GTAC	2 cut(s)	757, 1042
CviAII	CATG	1 cut(s)	556
CviQI	GTAC	2 cut(s)	757, 1042
DdeI	CTNAG	3 cut(s)	713, 776, 897
DinI	GGCGCC	3 cut(s)	259, 553, 829
DpnI	GATC	2 cut(s)	530, 659
DpnII	GATC	2 cut(s)	528, 657
EaeI	YGGCCR	2 cut(s)	576, 834
Eam1104I	CTCTTC	3 cut(s)	116, 577, 751
EarI	CTCTTC	3 cut(s)	116, 577, 751
EciI	GGCGGA	3 cut(s)	7, 421, 451
Ecl136II	GAGCTC	1 cut(s)	598
Eco130I	CCWWGG	5 cut(s)	204, 399, 555, 591, 831
Eco24I	GRGCYC	3 cut(s)	250, 600, 807
Eco47I	GGWCC	1 cut(s)	636
Eco53kI	GAGCTC	1 cut(s)	598
Eco57I	CTGAAG	1 cut(s)	674
EcoICRI	GAGCTC	1 cut(s)	598
EcoO109I	RGGNCCY	2 cut(s)	247, 636
EcoRII	CCWGG	2 cut(s)	638, 789
EcoT14I	CCWWGG	5 cut(s)	204, 399, 555, 591, 831
EcoT38I	GRGCYC	3 cut(s)	250, 600, 807
EgeI	GGCGCC	3 cut(s)	259, 553, 829
EheI	GGCGCC	3 cut(s)	259, 553, 829
ErhI	CCWWGG	5 cut(s)	204, 399, 555, 591, 831
Esp3I	CGTCTC	3 cut(s)	574, 938, 1049
FaeI	CATG	1 cut(s)	559
FaiI	YATR	4 cut(s)	218, 557, 581, 1086
FatI	CATG	1 cut(s)	555
FauI	CCCGC	4 cut(s)	203, 207, 237, 733
FblI	GTMKAC	2 cut(s)	357, 468
FokI	GGATG	4 cut(s)	131, 521, 625, 884
FriOI	GRGCYC	3 cut(s)	250, 600, 807
FspBI	CTAG	1 cut(s)	1062
GlaI	GCGC	4 cut(s)	259, 346, 553, 829
GsuI	CTGGAG	1 cut(s)	317
HaeII	RGCGCY	3 cut(s)	261, 555, 831
HapII	CCGG	7 cut(s)	261, 279, 549, 621, 729, 837, 1124
HgaI	GACGC	3 cut(s)	336, 383, 871
HhaI	GCGC	4 cut(s)	260, 347, 554, 830
Hin1I	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
Hin1II	CATG	1 cut(s)	559
Hin6I	GCGC	4 cut(s)	258, 345, 552, 828
HinP1I	GCGC	4 cut(s)	258, 345, 552, 828
HinfI	GANTC	4 cut(s)	12, 895, 958, 984
HpaII	CCGG	7 cut(s)	261, 279, 549, 621, 729, 837, 1124
HphI	GGTGA	4 cut(s)	106, 280, 961, 1127
Hpy166II	GTNNAC	2 cut(s)	358, 469
Hpy188I	TCNGA	8 cut(s)	94, 352, 716, 777, 813, 900, 943, 963
Hpy188III	TCNNGA	7 cut(s)	322, 334, 385, 394, 736, 1054, 1090
Hpy8I	GTNNAC	2 cut(s)	358, 469
Hpy99I	CGWCG	4 cut(s)	377, 446, 674, 865
HpyAV	CCTTC	6 cut(s)	295, 379, 400, 760, 965, 1090
HpyCH4III	ACNGT	2 cut(s)	949, 1019
HpyCH4V	TGCA	3 cut(s)	616, 928, 1105
HpyF3I	CTNAG	3 cut(s)	713, 776, 897
Hsp92I	GRCGYC	5 cut(s)	258, 375, 552, 828, 863
Hsp92II	CATG	1 cut(s)	559
HspAI	GCGC	4 cut(s)	258, 345, 552, 828
KasI	GGCGCC	3 cut(s)	257, 551, 827
KroI	GCCGGC	2 cut(s)	260, 548
KroNI	GCCGGC	2 cut(s)	262, 550
KspI	CCGCGG	1 cut(s)	771
Kzo9I	GATC	2 cut(s)	528, 657
LmnI	GCTCC	7 cut(s)	281, 336, 452, 595, 802, 839, 1126
Lsp1109I	GCAGC	2 cut(s)	619, 904
LweI	GCATC	4 cut(s)	282, 435, 603, 1108
MaeI	CTAG	1 cut(s)	1062
MalI	GATC	2 cut(s)	530, 659
MbiI	CCGCTC	1 cut(s)	244
MboI	GATC	2 cut(s)	528, 657
MflI	RGATCY	1 cut(s)	657
MhlI	GDGCHC	4 cut(s)	250, 591, 600, 807
MluCI	AATT	2 cut(s)	509, 1110
Mly113I	GGCGCC	3 cut(s)	258, 552, 828
MlyI	GAGTC	2 cut(s)	6, 889
MmeI	TCCRAC	1 cut(s)	213
MreI	CGCCGGCG	2 cut(s)	260, 548
MroNI	GCCGGC	2 cut(s)	260, 548
MslI	CAYNNNNRTG	1 cut(s)	584
MspA1I	CMGCKG	4 cut(s)	423, 610, 770, 868
MspI	CCGG	7 cut(s)	261, 279, 549, 621, 729, 837, 1124
MspR9I	CCNGG	4 cut(s)	622, 640, 730, 791
MvaI	CCWGG	2 cut(s)	640, 791
MvnI	CGCG	2 cut(s)	347, 770
NaeI	GCCGGC	2 cut(s)	262, 550
NarI	GGCGCC	3 cut(s)	258, 552, 828
NciI	CCSGG	2 cut(s)	622, 730
NcoI	CCATGG	1 cut(s)	555
NdeII	GATC	2 cut(s)	528, 657
NgoMIV	GCCGGC	2 cut(s)	260, 548
NlaIII	CATG	1 cut(s)	559
NmeAIII	GCCGAG	2 cut(s)	827, 1029
PaqCI	CACCTGC	2 cut(s)	488, 634
PcsI	WCGNNNNNNNCGW	1 cut(s)	480
PdiI	GCCGGC	2 cut(s)	262, 550
PfeI	GAWTC	2 cut(s)	958, 984
PflFI	GACNNNGTC	1 cut(s)	377
PflMI	CCANNNNNTGG	1 cut(s)	180
PleI	GAGTC	2 cut(s)	6, 889
PluTI	GGCGCC	3 cut(s)	261, 555, 831
PpsI	GAGTC	2 cut(s)	6, 889
PpuMI	RGGWCCY	1 cut(s)	636
Psp124BI	GAGCTC	1 cut(s)	600
Psp5II	RGGWCCY	1 cut(s)	636
Psp6I	CCWGG	2 cut(s)	638, 789
PspGI	CCWGG	2 cut(s)	638, 789
PspOMI	GGGCCC	1 cut(s)	246
PspPI	GGNCC	8 cut(s)	183, 246, 247, 624, 636, 682, 793, 1001
PspPPI	RGGWCCY	1 cut(s)	636
PstNI	CAGNNNCTG	3 cut(s)	639, 961, 1023
PsuI	RGATCY	1 cut(s)	657
PsyI	GACNNNGTC	1 cut(s)	377
RsaI	GTAC	2 cut(s)	758, 1043
RsaNI	GTAC	2 cut(s)	757, 1042
RseI	CAYNNNNRTG	1 cut(s)	584
SacI	GAGCTC	1 cut(s)	600
SacII	CCGCGG	1 cut(s)	771
Sau3AI	GATC	2 cut(s)	528, 657
Sau96I	GGNCC	8 cut(s)	183, 246, 247, 624, 636, 682, 793, 1001
ScaI	AGTACT	1 cut(s)	758
SchI	GAGTC	2 cut(s)	6, 889
ScrFI	CCNGG	4 cut(s)	622, 640, 730, 791
SduI	GDGCHC	4 cut(s)	250, 591, 600, 807
SfaNI	GCATC	4 cut(s)	282, 435, 603, 1108
SfoI	GGCGCC	3 cut(s)	259, 553, 829
Sfr303I	CCGCGG	1 cut(s)	771
SgrAI	CRCCGGYG	2 cut(s)	260, 548
SgrBI	CCGCGG	1 cut(s)	771
SinI	GGWCC	1 cut(s)	636
SmiMI	CAYNNNNRTG	1 cut(s)	584
SmlI	CTYRAG	2 cut(s)	383, 736
SmoI	CTYRAG	2 cut(s)	383, 736
Sse9I	AATT	2 cut(s)	509, 1110
SspDI	GGCGCC	3 cut(s)	257, 551, 827
SspMI	CTAG	1 cut(s)	1062
SstI	GAGCTC	1 cut(s)	600
StyD4I	CCNGG	4 cut(s)	620, 638, 728, 789
StyI	CCWWGG	5 cut(s)	204, 399, 555, 591, 831
TaaI	ACNGT	2 cut(s)	949, 1019
TaqI	TCGA	6 cut(s)	240, 312, 372, 663, 753, 1053
TasI	AATT	2 cut(s)	509, 1110
TatI	WGTACW	1 cut(s)	756
TauI	GCSGC	9 cut(s)	75, 267, 270, 273, 426, 770, 828, 868, 917
TfiI	GAWTC	2 cut(s)	958, 984
TscAI	CASTG	1 cut(s)	1024
TseI	GCWGC	2 cut(s)	607, 917
TspDTI	ATGAA	1 cut(s)	236
TspGWI	ACGGA	1 cut(s)	223
TspRI	CASTG	1 cut(s)	1024
Tth111I	GACNNNGTC	1 cut(s)	377
Van91I	CCANNNNNTGG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	636
XcmI	CCANNNNNNNNNTGG	1 cut(s)	406
XmiI	GTMKAC	2 cut(s)	357, 468
XspI	CTAG	1 cut(s)	1062
ZrmI	AGTACT	1 cut(s)	758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.