Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

30777587 .. 30779341

Gene Structure 1755 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013387

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTTGAATATGAAGAAATGTGGAGCTCGTTTGGTGTGCCAACAAGATTTGGAAGAACTCCTCCATGGAGCAGTGAACAGACTTGAGCGGACTCAGAAGTACAGCGACGAGGCAGCCATGGAGAGCAGACTCTCCGCCTCTCTAGGCCTCCCCTCTCCAAACCCAGACCACCACCACCGCCGCCACCACTCTCAAACCTCCGATGACTTCCACAACCTCTTCACCCACTTCGCCTCCCCAACCACATCTCACATCCCATTCTTCGCCTCCACCACCACCGCCACATGGGCCTCCAACACCCGCCCGCCCAAGGCCAAGTCCATAATGAAGAACCTCTCCGTCTTCGAGCGGGCCCTCATCGGCGCCGGCGGCGGCGGCATCGCCGGAGCCTTCACCTACTTCTGCCTCCACCCCCTCGACACCATCAAGACCAAGCTCCAGACCAAAGGCGCCTCCGAAGTCTACGCCAACGCCTTCGACGCCGTTCTCAAGACCTTCCAGACCAAGGGCGTTCTGGGGTTTTACAGCGGCATCTCCGCCGTCATCGTCGGCTCCACCGCTTCCTCCGCCGTCTACTTCGGCACCTGCGAGATGGGGAAGTCGTTTCTCTCCAAATTACCCAACTACCCCCCGATCCTCATCCCTCCCACCGCCGGCGCCATGGGCAACATCGTCTCTTCGGCCATAATGGTGCCCAAGGAGCTCATCACGCAGCGGATGCAGGCCGGGGCCAGAGGCAGGTCATGGCAAGTGTTGCTGAAGATCCTCGAAAACGACGGCGTTTTGGGCCTCTACGCAGGCTACTCCGCAACCTTGCTCAGAAACTTGCCCGCCGGGGTCTTGAGCTACTCTTCCTTCGAGTACTTGAAAGCCGCGGTTCTGAGCAAGACCAAGCAGGCCCAAATGGAGCCCATTCAGAGCGTGATTTGCGGCGCGCTGGCCGGAGCTATCTCGGCCTCCATTACGACGCCGTTGGATGTTGTGAAGACGAGGCTGATGACTCAGAATGTGAATAAGGTGGCTGCTTTTGTGCAGAGTGGGGTTTCGGAGACGGTGAAGCAGATTCTGAAAGAAGAAGGGTTGGTGGGATTCACAAGAGGAATGGGGCCGAGGGTTCTTCATAGCGCCTGCTTTTCGGCATTGGGGTACTTTGCTTTTGAGACCGCTAGGCTTGCGATTTTGAATGAGTATATCAAGAGGAAGGAGTTGCAAGAAATTGGTGATGTTCCGGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

412

Amino Acids

44.33

Weight (kDa)

9.37

Isoelectric Point (pI)

34.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	124 - 205	8.1e-19	Mitochondrial carrier protein
Mito_carr	PF00153	217 - 294	2e-12	Mitochondrial carrier protein
Mito_carr	PF00153	302 - 393	5.6e-21	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	593
Acc36I	ACCTGC	2 cut(s)	593, 729
AccB1I	GGYRCC	5 cut(s)	362, 449, 581, 656, 691
AccBSI	CCGCTC	2 cut(s)	88, 349
AccI	GTMKAC	2 cut(s)	462, 573
AccII	CGCG	2 cut(s)	875, 935
AclWI	GGATC	2 cut(s)	628, 757
AcoI	YGGCCR	2 cut(s)	681, 939
AcuI	CTGAAG	1 cut(s)	779
AcyI	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
AfaI	GTAC	3 cut(s)	101, 863, 1148
AfiI	CCNNNNNNNGG	5 cut(s)	285, 310, 505, 653, 738
AgsI	TTSAA	3 cut(s)	7, 868, 1183
AluBI	AGCT	5 cut(s)	26, 436, 703, 846, 947
AluI	AGCT	5 cut(s)	26, 436, 703, 846, 947
Alw21I	GWGCWC	2 cut(s)	28, 705
Alw26I	GTCTC	3 cut(s)	679, 1043, 1154
AlwI	GGATC	2 cut(s)	628, 757
AlwNI	CAGNNNCTG	1 cut(s)	1066
ApaI	GGGCCC	1 cut(s)	355
ApeKI	GCWGC	3 cut(s)	113, 712, 1022
AspLEI	GCGC	6 cut(s)	365, 452, 659, 935, 937, 1127
AspS9I	GGNCC	7 cut(s)	288, 351, 352, 729, 787, 898, 1106
AsuC2I	CCSGG	2 cut(s)	727, 835
AsuHPI	GGTGA	4 cut(s)	214, 385, 1066, 1232
BaeGI	GKGCMC	2 cut(s)	355, 696
BanI	GGYRCC	5 cut(s)	362, 449, 581, 656, 691
BanII	GRGCYC	4 cut(s)	28, 355, 705, 912
BbsI	GAAGAC	2 cut(s)	334, 992
Bbv12I	GWGCWC	2 cut(s)	28, 705
BbvI	GCAGC	3 cut(s)	125, 724, 1009
BccI	CCATC	2 cut(s)	431, 586
BceAI	ACGGC	5 cut(s)	467, 524, 554, 793, 955
BcnI	CCSGG	2 cut(s)	727, 835
BcoDI	GTCTC	3 cut(s)	679, 1043, 1154
BfaI	CTAG	2 cut(s)	143, 1167
BfoI	RGCGCY	4 cut(s)	366, 453, 660, 1128
BfuAI	ACCTGC	2 cut(s)	593, 729
BglI	GCCNNNNNGGC	1 cut(s)	287
BmcAI	AGTACT	1 cut(s)	863
Bme1390I	CCNGG	2 cut(s)	727, 835
BmgT120I	GGNCC	7 cut(s)	288, 351, 352, 729, 787, 898, 1106
BmrFI	CCNGG	2 cut(s)	727, 835
BmsI	GCATC	3 cut(s)	387, 540, 708
BpiI	GAAGAC	2 cut(s)	334, 992
BpmI	CTGGAG	1 cut(s)	422
BpuEI	CTTGAG	3 cut(s)	104, 473, 862
BpuMI	CCSGG	2 cut(s)	727, 835
BsaBI	GATNNNNATC	1 cut(s)	638
BsaHI	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
BsaI	GGTCTC	1 cut(s)	1154
BsaXI	ACNNNNNCTCC	2 cut(s)	218, 248
Bsc4I	CCNNNNNNNGG	5 cut(s)	285, 310, 505, 653, 738
Bse118I	RCCGGY	2 cut(s)	365, 653
Bse8I	GATNNNNATC	1 cut(s)	638
BseGI	GGATG	4 cut(s)	252, 639, 723, 982
BseJI	GATNNNNATC	1 cut(s)	638
BseLI	CCNNNNNNNGG	5 cut(s)	285, 310, 505, 653, 738
BseMII	CTCAG	4 cut(s)	107, 832, 872, 1016
BsePI	GCGCGC	1 cut(s)	933
BseRI	GAGGAG	1 cut(s)	50
BseSI	GKGCMC	2 cut(s)	355, 696
BseXI	GCAGC	3 cut(s)	125, 724, 1009
BsgI	GTGCAG	1 cut(s)	1052
Bsh1236I	CGCG	2 cut(s)	875, 935
BshNI	GGYRCC	5 cut(s)	362, 449, 581, 656, 691
BsiHKAI	GWGCWC	2 cut(s)	28, 705
BsiSI	CCGG	7 cut(s)	366, 384, 654, 726, 834, 942, 1229
BslI	CCNNNNNNNGG	5 cut(s)	285, 310, 505, 653, 738
BsmAI	GTCTC	3 cut(s)	679, 1043, 1154
BsmBI	CGTCTC	2 cut(s)	679, 1043
Bso31I	GGTCTC	1 cut(s)	1154
Bsp120I	GGGCCC	1 cut(s)	351
Bsp1286I	GDGCHC	5 cut(s)	28, 355, 696, 705, 912
Bsp143I	GATC	2 cut(s)	633, 762
Bsp19I	CCATGG	3 cut(s)	64, 117, 660
BspCNI	CTCAG	4 cut(s)	106, 831, 873, 1015
BspFNI	CGCG	2 cut(s)	875, 935
BspMI	ACCTGC	2 cut(s)	593, 729
BspPI	GGATC	2 cut(s)	628, 757
BspT107I	GGYRCC	5 cut(s)	362, 449, 581, 656, 691
BspTNI	GGTCTC	1 cut(s)	1154
BsrBI	CCGCTC	2 cut(s)	88, 349
BsrFI	RCCGGY	2 cut(s)	365, 653
BssAI	RCCGGY	2 cut(s)	365, 653
BssHII	GCGCGC	1 cut(s)	933
BssMI	GATC	2 cut(s)	633, 762
BssNI	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
BssT1I	CCWWGG	6 cut(s)	64, 117, 309, 504, 660, 696
Bst4CI	ACNGT	1 cut(s)	1054
Bst6I	CTCTTC	3 cut(s)	224, 682, 856
BstACI	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
BstAPI	GCANNNNNTGC	2 cut(s)	718, 754
BstDEI	CTNAG	4 cut(s)	93, 818, 881, 1002
BstDSI	CCRYGG	4 cut(s)	64, 117, 660, 873
BstF5I	GGATG	4 cut(s)	252, 639, 723, 982
BstFNI	CGCG	2 cut(s)	875, 935
BstH2I	RGCGCY	4 cut(s)	366, 453, 660, 1128
BstHHI	GCGC	6 cut(s)	365, 452, 659, 935, 937, 1127
BstKTI	GATC	2 cut(s)	636, 765
BstMAI	GTCTC	3 cut(s)	679, 1043, 1154
BstMBI	GATC	2 cut(s)	633, 762
BstSCI	CCNGG	2 cut(s)	725, 833
BstSLI	GKGCMC	2 cut(s)	355, 696
BstUI	CGCG	2 cut(s)	875, 935
BstV1I	GCAGC	3 cut(s)	125, 724, 1009
BstV2I	GAAGAC	2 cut(s)	334, 992
BstX2I	RGATCY	1 cut(s)	762
BstYI	RGATCY	1 cut(s)	762
BtgI	CCRYGG	4 cut(s)	64, 117, 660, 873
BtgZI	GCGATG	1 cut(s)	364
BtsCI	GGATG	4 cut(s)	252, 639, 723, 982
BtsI	GCAGTG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	78
BveI	ACCTGC	2 cut(s)	593, 729
CaiI	CAGNNNCTG	1 cut(s)	1066
CfoI	GCGC	6 cut(s)	365, 452, 659, 935, 937, 1127
Cfr10I	RCCGGY	2 cut(s)	365, 653
Cfr13I	GGNCC	7 cut(s)	288, 351, 352, 729, 787, 898, 1106
Cfr42I	CCGCGG	1 cut(s)	876
CseI	GACGC	2 cut(s)	488, 976
Csp6I	GTAC	3 cut(s)	100, 862, 1147
CviAII	CATG	5 cut(s)	65, 118, 285, 661, 744
CviQI	GTAC	3 cut(s)	100, 862, 1147
DdeI	CTNAG	4 cut(s)	93, 818, 881, 1002
DinI	GGCGCC	3 cut(s)	364, 451, 658
DpnI	GATC	2 cut(s)	635, 764
DpnII	GATC	2 cut(s)	633, 762
EaeI	YGGCCR	2 cut(s)	681, 939
Eam1104I	CTCTTC	3 cut(s)	224, 682, 856
EarI	CTCTTC	3 cut(s)	224, 682, 856
EciI	GGCGGA	3 cut(s)	124, 526, 556
Ecl136II	GAGCTC	2 cut(s)	26, 703
Eco130I	CCWWGG	6 cut(s)	64, 117, 309, 504, 660, 696
Eco147I	AGGCCT	1 cut(s)	147
Eco24I	GRGCYC	4 cut(s)	28, 355, 705, 912
Eco31I	GGTCTC	1 cut(s)	1154
Eco53kI	GAGCTC	2 cut(s)	26, 703
Eco57I	CTGAAG	1 cut(s)	779
EcoICRI	GAGCTC	2 cut(s)	26, 703
EcoO109I	RGGNCCY	1 cut(s)	352
EcoT14I	CCWWGG	6 cut(s)	64, 117, 309, 504, 660, 696
EcoT38I	GRGCYC	4 cut(s)	28, 355, 705, 912
EgeI	GGCGCC	3 cut(s)	364, 451, 658
EheI	GGCGCC	3 cut(s)	364, 451, 658
ErhI	CCWWGG	6 cut(s)	64, 117, 309, 504, 660, 696
Esp3I	CGTCTC	2 cut(s)	679, 1043
FaeI	CATG	5 cut(s)	68, 121, 288, 664, 747
FatI	CATG	5 cut(s)	64, 117, 284, 660, 743
FauI	CCCGC	4 cut(s)	308, 312, 342, 838
FblI	GTMKAC	2 cut(s)	462, 573
FokI	GGATG	4 cut(s)	239, 626, 730, 989
FriOI	GRGCYC	4 cut(s)	28, 355, 705, 912
FspBI	CTAG	2 cut(s)	143, 1167
GlaI	GCGC	6 cut(s)	364, 451, 658, 934, 936, 1126
GsuI	CTGGAG	1 cut(s)	422
HaeII	RGCGCY	4 cut(s)	366, 453, 660, 1128
HapII	CCGG	7 cut(s)	366, 384, 654, 726, 834, 942, 1229
HgaI	GACGC	2 cut(s)	488, 976
HhaI	GCGC	6 cut(s)	365, 452, 659, 935, 937, 1127
Hin1I	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
Hin1II	CATG	5 cut(s)	68, 121, 288, 664, 747
Hin6I	GCGC	6 cut(s)	363, 450, 657, 933, 935, 1125
HinP1I	GCGC	6 cut(s)	363, 450, 657, 933, 935, 1125
HinfI	GANTC	5 cut(s)	91, 129, 1000, 1063, 1089
HpaII	CCGG	7 cut(s)	366, 384, 654, 726, 834, 942, 1229
HphI	GGTGA	4 cut(s)	214, 385, 1066, 1232
Hpy166II	GTNNAC	3 cut(s)	76, 463, 574
Hpy188I	TCNGA	9 cut(s)	96, 202, 457, 821, 882, 918, 1005, 1048, 1068
Hpy188III	TCNNGA	6 cut(s)	427, 439, 490, 499, 841, 1195
Hpy8I	GTNNAC	3 cut(s)	76, 463, 574
Hpy99I	CGWCG	5 cut(s)	110, 482, 551, 779, 970
HpyAV	CCTTC	6 cut(s)	400, 484, 505, 865, 1070, 1195
HpyCH4III	ACNGT	1 cut(s)	1054
HpyCH4V	TGCA	3 cut(s)	721, 1033, 1210
HpyF3I	CTNAG	4 cut(s)	93, 818, 881, 1002
Hsp92I	GRCGYC	5 cut(s)	363, 450, 480, 657, 968
Hsp92II	CATG	5 cut(s)	68, 121, 288, 664, 747
HspAI	GCGC	6 cut(s)	363, 450, 657, 933, 935, 1125
KasI	GGCGCC	3 cut(s)	362, 449, 656
KroI	GCCGGC	2 cut(s)	365, 653
KroNI	GCCGGC	2 cut(s)	367, 655
KspI	CCGCGG	1 cut(s)	876
Kzo9I	GATC	2 cut(s)	633, 762
LmnI	GCTCC	8 cut(s)	23, 68, 386, 441, 557, 700, 907, 944
Lsp1109I	GCAGC	3 cut(s)	125, 724, 1009
LweI	GCATC	3 cut(s)	387, 540, 708
MaeI	CTAG	2 cut(s)	143, 1167
MalI	GATC	2 cut(s)	635, 764
MbiI	CCGCTC	2 cut(s)	88, 349
MboI	GATC	2 cut(s)	633, 762
MflI	RGATCY	1 cut(s)	762
MhlI	GDGCHC	5 cut(s)	28, 355, 696, 705, 912
MluCI	AATT	2 cut(s)	614, 1215
Mly113I	GGCGCC	3 cut(s)	363, 450, 657
MlyI	GAGTC	3 cut(s)	85, 123, 994
MmeI	TCCRAC	2 cut(s)	318, 954
MreI	CGCCGGCG	2 cut(s)	365, 653
MroNI	GCCGGC	2 cut(s)	365, 653
MslI	CAYNNNNRTG	1 cut(s)	689
MspA1I	CMGCKG	3 cut(s)	528, 715, 875
MspI	CCGG	7 cut(s)	366, 384, 654, 726, 834, 942, 1229
MspR9I	CCNGG	2 cut(s)	727, 835
MvnI	CGCG	2 cut(s)	875, 935
NaeI	GCCGGC	2 cut(s)	367, 655
NarI	GGCGCC	3 cut(s)	363, 450, 657
NciI	CCSGG	2 cut(s)	727, 835
NcoI	CCATGG	3 cut(s)	64, 117, 660
NdeII	GATC	2 cut(s)	633, 762
NgoMIV	GCCGGC	2 cut(s)	365, 653
NlaIII	CATG	5 cut(s)	68, 121, 288, 664, 747
NmeAIII	GCCGAG	2 cut(s)	932, 1134
PaqCI	CACCTGC	1 cut(s)	593
PauI	GCGCGC	1 cut(s)	933
PceI	AGGCCT	1 cut(s)	147
PcsI	WCGNNNNNNNCGW	1 cut(s)	585
PdiI	GCCGGC	2 cut(s)	367, 655
PfeI	GAWTC	2 cut(s)	1063, 1089
PleI	GAGTC	3 cut(s)	85, 123, 994
PluTI	GGCGCC	3 cut(s)	366, 453, 660
PpsI	GAGTC	3 cut(s)	85, 123, 994
Psp124BI	GAGCTC	2 cut(s)	28, 705
PspOMI	GGGCCC	1 cut(s)	351
PspPI	GGNCC	7 cut(s)	288, 351, 352, 729, 787, 898, 1106
PstNI	CAGNNNCTG	1 cut(s)	1066
PsuI	RGATCY	1 cut(s)	762
PteI	GCGCGC	1 cut(s)	933
RsaI	GTAC	3 cut(s)	101, 863, 1148
RsaNI	GTAC	3 cut(s)	100, 862, 1147
RseI	CAYNNNNRTG	1 cut(s)	689
SacI	GAGCTC	2 cut(s)	28, 705
SacII	CCGCGG	1 cut(s)	876
Sau3AI	GATC	2 cut(s)	633, 762
Sau96I	GGNCC	7 cut(s)	288, 351, 352, 729, 787, 898, 1106
ScaI	AGTACT	1 cut(s)	863
SchI	GAGTC	3 cut(s)	85, 123, 994
ScrFI	CCNGG	2 cut(s)	727, 835
SduI	GDGCHC	5 cut(s)	28, 355, 696, 705, 912
SfaNI	GCATC	3 cut(s)	387, 540, 708
SfoI	GGCGCC	3 cut(s)	364, 451, 658
Sfr303I	CCGCGG	1 cut(s)	876
SgrAI	CRCCGGYG	2 cut(s)	365, 653
SgrBI	CCGCGG	1 cut(s)	876
SmiMI	CAYNNNNRTG	1 cut(s)	689
SmlI	CTYRAG	3 cut(s)	83, 488, 841
SmoI	CTYRAG	3 cut(s)	83, 488, 841
Sse9I	AATT	2 cut(s)	614, 1215
SseBI	AGGCCT	1 cut(s)	147
SspDI	GGCGCC	3 cut(s)	362, 449, 656
SspMI	CTAG	2 cut(s)	143, 1167
SstI	GAGCTC	2 cut(s)	28, 705
StuI	AGGCCT	1 cut(s)	147
StyD4I	CCNGG	2 cut(s)	725, 833
StyI	CCWWGG	6 cut(s)	64, 117, 309, 504, 660, 696
TaaI	ACNGT	1 cut(s)	1054
TaqI	TCGA	5 cut(s)	345, 417, 477, 768, 858
TasI	AATT	2 cut(s)	614, 1215
TatI	WGTACW	2 cut(s)	99, 861
TauI	GCSGC	7 cut(s)	183, 372, 375, 378, 531, 875, 933
TfiI	GAWTC	2 cut(s)	1063, 1089
TscAI	CASTG	1 cut(s)	78
TseI	GCWGC	3 cut(s)	113, 712, 1022
TspDTI	ATGAA	3 cut(s)	26, 341, 1109
TspGWI	ACGGA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	78
XcmI	CCANNNNNNNNNTGG	1 cut(s)	511
XmiI	GTMKAC	2 cut(s)	462, 573
XspI	CTAG	2 cut(s)	143, 1167
ZrmI	AGTACT	1 cut(s)	863

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.