Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028629.1

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 612

Gene Structure 611 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028629.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 611 bp

atggagagcagaatctccgcctctcttggcctcccctctccaaacccagaccaccaccgccgccgccactctcaaacctccgatgacttccacaacctcttcacccacttcgcctccccaaccacatctcacatcccattcttcgcctccaccaccaccgccaccaccaaatgggcctccaacacccgcccgcccaaggccaagtccataatgaagaacctctccgtcttcgagcgggccctcatcggcgccggcggcggcggcatcgccggagccttcacctacttctgcctccaccccctcgacaccatcaagaccaagctccagaccaaaggcgcgtccgaagtctacgccaacgccttcgacgccgtcctcaagaccttccaggccaagggcgttctggggttttacagcggcatctccgccgtcatcgtcggctccaccgcttcctccgccgtctacttcggcacctgcgagatggggaagtcgtttctctccaaattacccaactaccccccgatcctcatcccccccaccgccggcgccatgggcaacatcgtctcttcggccataatggtgcccaaggagctgatcacgcagcggatgcaggc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

204

Amino Acids

21.8

Weight (kDa)

9.77

Isoelectric Point (pI)

37.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	479
Acc36I	ACCTGC	1 cut(s)	479
AccB1I	GGYRCC	4 cut(s)	248, 467, 542, 577
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	348, 459
AccII	CGCG	1 cut(s)	338
AclWI	GGATC	1 cut(s)	514
AcoI	YGGCCR	1 cut(s)	567
AcyI	GRCGYC	3 cut(s)	249, 366, 543
AfiI	CCNNNNNNNGG	4 cut(s)	171, 196, 391, 539
AjnI	CCWGG	1 cut(s)	384
AluBI	AGCT	2 cut(s)	322, 589
AluI	AGCT	2 cut(s)	322, 589
Alw26I	GTCTC	1 cut(s)	565
AlwI	GGATC	1 cut(s)	514
AoxI	GGCC	6 cut(s)	28, 174, 198, 237, 387, 567
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	1 cut(s)	598
AspLEI	GCGC	3 cut(s)	251, 338, 545
AspS9I	GGNCC	3 cut(s)	174, 237, 238
AsuHPI	GGTGA	2 cut(s)	94, 271
BaeGI	GKGCMC	2 cut(s)	241, 582
BanI	GGYRCC	4 cut(s)	248, 467, 542, 577
BanII	GRGCYC	1 cut(s)	241
BbsI	GAAGAC	1 cut(s)	220
BccI	CCATC	2 cut(s)	317, 472
BceAI	ACGGC	3 cut(s)	353, 410, 440
BciT130I	CCWGG	1 cut(s)	386
BclI	TGATCA	1 cut(s)	591
BcoDI	GTCTC	1 cut(s)	565
BfoI	RGCGCY	2 cut(s)	252, 546
BfuAI	ACCTGC	1 cut(s)	479
BisI	GCNGC	7 cut(s)	61, 64, 256, 259, 262, 415, 599
BlsI	GCNGC	7 cut(s)	62, 65, 257, 260, 263, 416, 600
Bme1390I	CCNGG	1 cut(s)	386
BmgT120I	GGNCC	3 cut(s)	174, 237, 238
BmiI	GGNNCC	7 cut(s)	239, 250, 274, 439, 469, 544, 579
BmrFI	CCNGG	1 cut(s)	386
BmsI	GCATC	3 cut(s)	273, 426, 594
BpiI	GAAGAC	1 cut(s)	220
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	359
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	3 cut(s)	249, 366, 543
BsaJI	CCNNGG	4 cut(s)	195, 390, 546, 582
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	4 cut(s)	171, 196, 391, 539
Bse118I	RCCGGY	2 cut(s)	251, 539
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	386
BseDI	CCNNGG	4 cut(s)	195, 390, 546, 582
BseGI	GGATG	3 cut(s)	132, 525, 609
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	4 cut(s)	171, 196, 391, 539
BseSI	GKGCMC	2 cut(s)	241, 582
Bsh1236I	CGCG	1 cut(s)	338
BshFI	GGCC	6 cut(s)	30, 176, 200, 239, 389, 569
BshNI	GGYRCC	4 cut(s)	248, 467, 542, 577
BsiSI	CCGG	3 cut(s)	252, 270, 540
BslI	CCNNNNNNNGG	4 cut(s)	171, 196, 391, 539
BsmAI	GTCTC	1 cut(s)	565
BsmBI	CGTCTC	1 cut(s)	565
BsnI	GGCC	6 cut(s)	30, 176, 200, 239, 389, 569
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	2 cut(s)	241, 582
Bsp143I	GATC	2 cut(s)	519, 591
Bsp19I	CCATGG	1 cut(s)	546
BspANI	GGCC	6 cut(s)	30, 176, 200, 239, 389, 569
BspFNI	CGCG	1 cut(s)	338
BspLI	GGNNCC	7 cut(s)	239, 250, 274, 439, 469, 544, 579
BspMI	ACCTGC	1 cut(s)	479
BspPI	GGATC	1 cut(s)	514
BspT107I	GGYRCC	4 cut(s)	248, 467, 542, 577
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	251, 539
BssAI	RCCGGY	2 cut(s)	251, 539
BssECI	CCNNGG	4 cut(s)	195, 390, 546, 582
BssMI	GATC	2 cut(s)	519, 591
BssNI	GRCGYC	3 cut(s)	249, 366, 543
BssT1I	CCWWGG	4 cut(s)	195, 390, 546, 582
Bst2UI	CCWGG	1 cut(s)	386
Bst6I	CTCTTC	2 cut(s)	104, 568
BstACI	GRCGYC	3 cut(s)	249, 366, 543
BstAPI	GCANNNNNTGC	1 cut(s)	604
BstC8I	GCNNGC	5 cut(s)	191, 237, 253, 541, 609
BstDSI	CCRYGG	1 cut(s)	546
BstF5I	GGATG	3 cut(s)	132, 525, 609
BstFNI	CGCG	1 cut(s)	338
BstH2I	RGCGCY	2 cut(s)	252, 546
BstHHI	GCGC	3 cut(s)	251, 338, 545
BstKTI	GATC	2 cut(s)	522, 594
BstMAI	GTCTC	1 cut(s)	565
BstMBI	GATC	2 cut(s)	519, 591
BstMWI	GCNNNNNNNGC	8 cut(s)	255, 261, 365, 452, 549, 586, 595, 604
BstNI	CCWGG	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	384
BstSLI	GKGCMC	2 cut(s)	241, 582
BstUI	CGCG	1 cut(s)	338
BstV2I	GAAGAC	1 cut(s)	220
BsuRI	GGCC	6 cut(s)	30, 176, 200, 239, 389, 569
BtgI	CCRYGG	1 cut(s)	546
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	3 cut(s)	132, 525, 609
BveI	ACCTGC	1 cut(s)	479
Cac8I	GCNNGC	5 cut(s)	191, 237, 253, 541, 609
CfoI	GCGC	3 cut(s)	251, 338, 545
Cfr10I	RCCGGY	2 cut(s)	251, 539
Cfr13I	GGNCC	3 cut(s)	174, 237, 238
CseI	GACGC	2 cut(s)	327, 374
CviAII	CATG	1 cut(s)	547
DinI	GGCGCC	2 cut(s)	250, 544
DpnI	GATC	2 cut(s)	521, 593
DpnII	GATC	2 cut(s)	519, 591
EaeI	YGGCCR	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	104, 568
EarI	CTCTTC	2 cut(s)	104, 568
EciI	GGCGGA	3 cut(s)	7, 412, 442
Eco130I	CCWWGG	4 cut(s)	195, 390, 546, 582
Eco24I	GRGCYC	1 cut(s)	241
EcoO109I	RGGNCCY	1 cut(s)	238
EcoRII	CCWGG	1 cut(s)	384
EcoT14I	CCWWGG	4 cut(s)	195, 390, 546, 582
EcoT38I	GRGCYC	1 cut(s)	241
EgeI	GGCGCC	2 cut(s)	250, 544
EheI	GGCGCC	2 cut(s)	250, 544
ErhI	CCWWGG	4 cut(s)	195, 390, 546, 582
Esp3I	CGTCTC	1 cut(s)	565
FaeI	CATG	1 cut(s)	550
FaiI	YATR	3 cut(s)	209, 548, 572
FatI	CATG	1 cut(s)	546
FauI	CCCGC	3 cut(s)	194, 198, 228
FbaI	TGATCA	1 cut(s)	591
FblI	GTMKAC	2 cut(s)	348, 459
Fnu4HI	GCNGC	7 cut(s)	61, 64, 256, 259, 262, 415, 599
FokI	GGATG	2 cut(s)	119, 512
FriOI	GRGCYC	1 cut(s)	241
Fsp4HI	GCNGC	7 cut(s)	61, 64, 256, 259, 262, 415, 599
GlaI	GCGC	3 cut(s)	250, 337, 544
GluI	GCNGC	7 cut(s)	61, 64, 256, 259, 262, 415, 599
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	2 cut(s)	252, 546
HaeIII	GGCC	6 cut(s)	30, 176, 200, 239, 389, 569
HapII	CCGG	3 cut(s)	252, 270, 540
HgaI	GACGC	2 cut(s)	327, 374
HhaI	GCGC	3 cut(s)	251, 338, 545
Hin1I	GRCGYC	3 cut(s)	249, 366, 543
Hin1II	CATG	1 cut(s)	550
Hin6I	GCGC	3 cut(s)	249, 336, 543
HinP1I	GCGC	3 cut(s)	249, 336, 543
HinfI	GANTC	1 cut(s)	12
HpaII	CCGG	3 cut(s)	252, 270, 540
HphI	GGTGA	2 cut(s)	94, 271
Hpy166II	GTNNAC	2 cut(s)	349, 460
Hpy188I	TCNGA	2 cut(s)	82, 343
Hpy188III	TCNNGA	3 cut(s)	313, 325, 376
Hpy8I	GTNNAC	2 cut(s)	349, 460
Hpy99I	CGWCG	2 cut(s)	368, 437
HpyAV	CCTTC	3 cut(s)	286, 370, 391
HpyCH4V	TGCA	1 cut(s)	607
HpyF10VI	GCNNNNNNNGC	8 cut(s)	255, 261, 365, 452, 549, 586, 595, 604
Hsp92I	GRCGYC	3 cut(s)	249, 366, 543
Hsp92II	CATG	1 cut(s)	550
HspAI	GCGC	3 cut(s)	249, 336, 543
KasI	GGCGCC	2 cut(s)	248, 542
KroI	GCCGGC	2 cut(s)	251, 539
KroNI	GCCGGC	2 cut(s)	253, 541
Ksp22I	TGATCA	1 cut(s)	591
Kzo9I	GATC	2 cut(s)	519, 591
LmnI	GCTCC	4 cut(s)	272, 327, 443, 586
LweI	GCATC	3 cut(s)	273, 426, 594
MalI	GATC	2 cut(s)	521, 593
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	2 cut(s)	519, 591
MboII	GAAGA	5 cut(s)	91, 133, 220, 226, 555
MhlI	GDGCHC	2 cut(s)	241, 582
MluCI	AATT	1 cut(s)	500
Mly113I	GGCGCC	2 cut(s)	249, 543
MmeI	TCCRAC	1 cut(s)	204
MreI	CGCCGGCG	2 cut(s)	251, 539
MroNI	GCCGGC	2 cut(s)	251, 539
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	2 cut(s)	414, 601
MspI	CCGG	3 cut(s)	252, 270, 540
MspR9I	CCNGG	1 cut(s)	386
MvaI	CCWGG	1 cut(s)	386
MvnI	CGCG	1 cut(s)	338
MwoI	GCNNNNNNNGC	8 cut(s)	255, 261, 365, 452, 549, 586, 595, 604
NaeI	GCCGGC	2 cut(s)	253, 541
NarI	GGCGCC	2 cut(s)	249, 543
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	2 cut(s)	519, 591
NgoMIV	GCCGGC	2 cut(s)	251, 539
NlaIII	CATG	1 cut(s)	550
NlaIV	GGNNCC	7 cut(s)	239, 250, 274, 439, 469, 544, 579
PaqCI	CACCTGC	1 cut(s)	479
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdiI	GCCGGC	2 cut(s)	253, 541
PfeI	GAWTC	1 cut(s)	12
PflFI	GACNNNGTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	171
PkrI	GCNGC	7 cut(s)	62, 65, 257, 260, 263, 416, 600
PluTI	GGCGCC	2 cut(s)	252, 546
Psp6I	CCWGG	1 cut(s)	384
PspGI	CCWGG	1 cut(s)	384
PspN4I	GGNNCC	7 cut(s)	239, 250, 274, 439, 469, 544, 579
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	3 cut(s)	174, 237, 238
PsyI	GACNNNGTC	1 cut(s)	368
RseI	CAYNNNNRTG	1 cut(s)	575
SatI	GCNGC	7 cut(s)	61, 64, 256, 259, 262, 415, 599
Sau3AI	GATC	2 cut(s)	519, 591
Sau96I	GGNCC	3 cut(s)	174, 237, 238
ScrFI	CCNGG	1 cut(s)	386
SduI	GDGCHC	2 cut(s)	241, 582
SetI	ASST	8 cut(s)	80, 99, 222, 284, 324, 383, 473, 591
SfaNI	GCATC	3 cut(s)	273, 426, 594
SfoI	GGCGCC	2 cut(s)	250, 544
SgrAI	CRCCGGYG	2 cut(s)	251, 539
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
Sse9I	AATT	1 cut(s)	500
SspDI	GGCGCC	2 cut(s)	248, 542
StyD4I	CCNGG	1 cut(s)	384
StyI	CCWWGG	4 cut(s)	195, 390, 546, 582
TaqI	TCGA	3 cut(s)	231, 303, 363
TasI	AATT	1 cut(s)	500
TauI	GCSGC	6 cut(s)	63, 66, 258, 261, 264, 417
TfiI	GAWTC	1 cut(s)	12
TseI	GCWGC	1 cut(s)	598
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	214
Tth111I	GACNNNGTC	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	171
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	348, 459

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.