Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000059.1

Orthogroup ID

OG0009209

Physical Location & Seq

Genomic Coordinates Reverse (-)

2507 .. 3628

Gene Structure 1122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000059.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

atggagagcagaatctccgcctctcttggcctcccctctccaaacccagaccaccaccgccgccgccactctcaaacctccgatgacttccacaacctcttcacccacttcgcctccccaaccacatctcacatcccattcttcgcctccaccaccaccgccaccaccaaatgggcctccaacacccgcccgcccaaggccaagtccataatgaagaacctctccgtcttcgagcgggccctcatcggcgccggcggcggcggcatcgccggagccttcacctacttctgcctccaccccctcgacaccatcaagaccaagctccagaccaaaggcgcgtccgaagtctacgccaacgccttcgacgccgtcctcaagaccttccaggccaagggcgttctggggttttacagcggcatctccgccgtcatcgtcggctccaccgcttcctccgccgtctacttcggcacctgcgagatgggcaagtcgtttctctcccaattacccaactaccccccgatcctcatccctcccaccgccggcgccatgggcaacatcgtctcttcggccataatggtgcccaaggagctgatcacgcagcggatgcaggccggggccagaggcaggtcctggcaggtgttgctgaagatcctcgaaaacgacggcgttttgggcctctacgcaggctactccgcaaccttgctcagaaacttgcccgccggggtcttgagctactcttccttcgagtacttgaaagccgcggttctgagcaagaccaagcaggcccaaatggagcccattcagagcgtgatttgcggcgccttggccggagctatctcggcctccattacgacgccgctggatgttgtgaagacgaggctgatgactcagaatgtgaataaggtggctgcttttgtgcagagtggggtttcggagacggtgaagcagattctgaaagaagaagggctggtgggattcacaagaggaatggggccgagggttcttcacagtgcctgcttttccgcattggggtactttgctttcgagaccgctaggcttgcgattttgaatgagtatatcaagaggaaggagttgcaagaaattggtcatgctccggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006811 GO:0006812 GO:0006826 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0010035 GO:0010038 GO:0010039 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0030001 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

373

Amino Acids

39.96

Weight (kDa)

9.64

Isoelectric Point (pI)

38.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009209)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42130
fragaria_vesca	FvH4_2g14300 FvH4_2g14300
malus_domestica	MD05G1019200.v1.1 MD10G1020700.v1.1
prunus_persica	Prupe.8G024200_v2.0.a1 Prupe.8G024200_v2.0.a1
pyrus_communis	pycom05g01120 pycom10g01330
rosa_chinensis	RchiOBHm_Chr6g0276601
rosa_laevigata	RLG00000013387
rosa_multiflora	Rmu_sc0000969.1_g000001 Rmu_sc0028629.1_g000001 Rmu_sc0042856.1_g000001 Rmu_ssc0000059.1_g000001
rosa_roxburghii	Rroxscaffold_7G00192160
rosa_rugosa	Rorug06G0102000
rosa_samantha	Rh6AG212700 Rh6BG217700 Rh6CG220000 Rh6DG209800
rosa_wichuraiana	Rw6G018600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	479, 625
Acc36I	ACCTGC	3 cut(s)	479, 615, 625
AccB1I	GGYRCC	5 cut(s)	248, 467, 542, 577, 818
AccB7I	CCANNNNNTGG	1 cut(s)	171
AccBSI	CCGCTC	1 cut(s)	235
AccI	GTMKAC	2 cut(s)	348, 459
AccII	CGCG	2 cut(s)	338, 761
AclWI	GGATC	2 cut(s)	514, 643
AcoI	YGGCCR	2 cut(s)	567, 825
AcuI	CTGAAG	1 cut(s)	665
AcyI	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
AfaI	GTAC	2 cut(s)	749, 1034
AfiI	CCNNNNNNNGG	6 cut(s)	171, 196, 391, 539, 624, 1029
AgsI	TTSAA	2 cut(s)	754, 1069
AjnI	CCWGG	2 cut(s)	384, 629
AluBI	AGCT	4 cut(s)	322, 589, 732, 833
AluI	AGCT	4 cut(s)	322, 589, 732, 833
Alw26I	GTCTC	3 cut(s)	565, 929, 1040
AlwI	GGATC	2 cut(s)	514, 643
AlwNI	CAGNNNCTG	3 cut(s)	630, 952, 1014
ApaI	GGGCCC	1 cut(s)	241
ApeKI	GCWGC	2 cut(s)	598, 908
AspLEI	GCGC	4 cut(s)	251, 338, 545, 821
AspS9I	GGNCC	8 cut(s)	174, 237, 238, 615, 627, 673, 784, 992
AsuC2I	CCSGG	2 cut(s)	613, 721
AsuHPI	GGTGA	3 cut(s)	94, 271, 952
AvaII	GGWCC	1 cut(s)	627
BaeGI	GKGCMC	2 cut(s)	241, 582
BanI	GGYRCC	5 cut(s)	248, 467, 542, 577, 818
BanII	GRGCYC	2 cut(s)	241, 798
BbsI	GAAGAC	2 cut(s)	220, 878
BbvI	GCAGC	2 cut(s)	610, 895
BccI	CCATC	2 cut(s)	317, 472
BceAI	ACGGC	4 cut(s)	353, 410, 440, 679
BciT130I	CCWGG	2 cut(s)	386, 631
BclI	TGATCA	1 cut(s)	591
BcnI	CCSGG	2 cut(s)	613, 721
BcoDI	GTCTC	3 cut(s)	565, 929, 1040
BfaI	CTAG	1 cut(s)	1053
BfoI	RGCGCY	3 cut(s)	252, 546, 822
BfuAI	ACCTGC	3 cut(s)	479, 615, 625
BmcAI	AGTACT	1 cut(s)	749
Bme1390I	CCNGG	4 cut(s)	386, 613, 631, 721
Bme18I	GGWCC	1 cut(s)	627
BmgT120I	GGNCC	8 cut(s)	174, 237, 238, 615, 627, 673, 784, 992
BmrFI	CCNGG	4 cut(s)	386, 613, 631, 721
BmsI	GCATC	3 cut(s)	273, 426, 594
BpiI	GAAGAC	2 cut(s)	220, 878
BpmI	CTGGAG	1 cut(s)	308
BpuEI	CTTGAG	2 cut(s)	359, 748
BpuMI	CCSGG	2 cut(s)	613, 721
BsaBI	GATNNNNATC	1 cut(s)	524
BsaHI	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
BsaI	GGTCTC	1 cut(s)	1040
BsaJI	CCNNGG	9 cut(s)	195, 390, 546, 582, 612, 720, 759, 822, 995
BsaXI	ACNNNNNCTCC	2 cut(s)	98, 128
Bsc4I	CCNNNNNNNGG	6 cut(s)	171, 196, 391, 539, 624, 1029
Bse118I	RCCGGY	2 cut(s)	251, 539
Bse8I	GATNNNNATC	1 cut(s)	524
BseBI	CCWGG	2 cut(s)	386, 631
BseDI	CCNNGG	9 cut(s)	195, 390, 546, 582, 612, 720, 759, 822, 995
BseGI	GGATG	4 cut(s)	132, 525, 609, 868
BseJI	GATNNNNATC	1 cut(s)	524
BseLI	CCNNNNNNNGG	6 cut(s)	171, 196, 391, 539, 624, 1029
BseMII	CTCAG	3 cut(s)	718, 758, 902
BseSI	GKGCMC	2 cut(s)	241, 582
BseXI	GCAGC	2 cut(s)	610, 895
BsgI	GTGCAG	1 cut(s)	938
Bsh1236I	CGCG	2 cut(s)	338, 761
BshNI	GGYRCC	5 cut(s)	248, 467, 542, 577, 818
BsiSI	CCGG	7 cut(s)	252, 270, 540, 612, 720, 828, 1115
BslI	CCNNNNNNNGG	6 cut(s)	171, 196, 391, 539, 624, 1029
BsmAI	GTCTC	3 cut(s)	565, 929, 1040
BsmBI	CGTCTC	2 cut(s)	565, 929
Bso31I	GGTCTC	1 cut(s)	1040
Bsp120I	GGGCCC	1 cut(s)	237
Bsp1286I	GDGCHC	3 cut(s)	241, 582, 798
Bsp143I	GATC	3 cut(s)	519, 591, 648
Bsp19I	CCATGG	1 cut(s)	546
BspCNI	CTCAG	3 cut(s)	717, 759, 901
BspFNI	CGCG	2 cut(s)	338, 761
BspMI	ACCTGC	3 cut(s)	479, 615, 625
BspPI	GGATC	2 cut(s)	514, 643
BspT107I	GGYRCC	5 cut(s)	248, 467, 542, 577, 818
BspTNI	GGTCTC	1 cut(s)	1040
BsrBI	CCGCTC	1 cut(s)	235
BsrFI	RCCGGY	2 cut(s)	251, 539
BssAI	RCCGGY	2 cut(s)	251, 539
BssECI	CCNNGG	9 cut(s)	195, 390, 546, 582, 612, 720, 759, 822, 995
BssMI	GATC	3 cut(s)	519, 591, 648
BssNI	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
BssT1I	CCWWGG	5 cut(s)	195, 390, 546, 582, 822
Bst2UI	CCWGG	2 cut(s)	386, 631
Bst4CI	ACNGT	2 cut(s)	940, 1010
Bst6I	CTCTTC	3 cut(s)	104, 568, 742
BstACI	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
BstAPI	GCANNNNNTGC	2 cut(s)	604, 640
BstDEI	CTNAG	3 cut(s)	704, 767, 888
BstDSI	CCRYGG	2 cut(s)	546, 759
BstF5I	GGATG	4 cut(s)	132, 525, 609, 868
BstFNI	CGCG	2 cut(s)	338, 761
BstH2I	RGCGCY	3 cut(s)	252, 546, 822
BstHHI	GCGC	4 cut(s)	251, 338, 545, 821
BstKTI	GATC	3 cut(s)	522, 594, 651
BstMAI	GTCTC	3 cut(s)	565, 929, 1040
BstMBI	GATC	3 cut(s)	519, 591, 648
BstNI	CCWGG	2 cut(s)	386, 631
BstSCI	CCNGG	4 cut(s)	384, 611, 629, 719
BstSLI	GKGCMC	2 cut(s)	241, 582
BstUI	CGCG	2 cut(s)	338, 761
BstV1I	GCAGC	2 cut(s)	610, 895
BstV2I	GAAGAC	2 cut(s)	220, 878
BstX2I	RGATCY	1 cut(s)	648
BstYI	RGATCY	1 cut(s)	648
BtgI	CCRYGG	2 cut(s)	546, 759
BtgZI	GCGATG	1 cut(s)	250
BtsCI	GGATG	4 cut(s)	132, 525, 609, 868
BtsIMutI	CAGTG	1 cut(s)	1015
BveI	ACCTGC	3 cut(s)	479, 615, 625
CaiI	CAGNNNCTG	3 cut(s)	630, 952, 1014
CfoI	GCGC	4 cut(s)	251, 338, 545, 821
Cfr10I	RCCGGY	2 cut(s)	251, 539
Cfr13I	GGNCC	8 cut(s)	174, 237, 238, 615, 627, 673, 784, 992
Cfr42I	CCGCGG	1 cut(s)	762
CseI	GACGC	3 cut(s)	327, 374, 862
Csp6I	GTAC	2 cut(s)	748, 1033
CviAII	CATG	2 cut(s)	547, 1109
CviQI	GTAC	2 cut(s)	748, 1033
DdeI	CTNAG	3 cut(s)	704, 767, 888
DinI	GGCGCC	3 cut(s)	250, 544, 820
DpnI	GATC	3 cut(s)	521, 593, 650
DpnII	GATC	3 cut(s)	519, 591, 648
EaeI	YGGCCR	2 cut(s)	567, 825
Eam1104I	CTCTTC	3 cut(s)	104, 568, 742
EarI	CTCTTC	3 cut(s)	104, 568, 742
EciI	GGCGGA	3 cut(s)	7, 412, 442
Eco130I	CCWWGG	5 cut(s)	195, 390, 546, 582, 822
Eco24I	GRGCYC	2 cut(s)	241, 798
Eco31I	GGTCTC	1 cut(s)	1040
Eco47I	GGWCC	1 cut(s)	627
Eco57I	CTGAAG	1 cut(s)	665
EcoO109I	RGGNCCY	2 cut(s)	238, 627
EcoRII	CCWGG	2 cut(s)	384, 629
EcoT14I	CCWWGG	5 cut(s)	195, 390, 546, 582, 822
EcoT38I	GRGCYC	2 cut(s)	241, 798
EgeI	GGCGCC	3 cut(s)	250, 544, 820
EheI	GGCGCC	3 cut(s)	250, 544, 820
ErhI	CCWWGG	5 cut(s)	195, 390, 546, 582, 822
Esp3I	CGTCTC	2 cut(s)	565, 929
FaeI	CATG	2 cut(s)	550, 1112
FaiI	YATR	5 cut(s)	209, 548, 572, 1077, 1110
FatI	CATG	2 cut(s)	546, 1108
FauI	CCCGC	4 cut(s)	194, 198, 228, 724
FbaI	TGATCA	1 cut(s)	591
FblI	GTMKAC	2 cut(s)	348, 459
FokI	GGATG	4 cut(s)	119, 512, 616, 875
FriOI	GRGCYC	2 cut(s)	241, 798
FspBI	CTAG	1 cut(s)	1053
GlaI	GCGC	4 cut(s)	250, 337, 544, 820
GsuI	CTGGAG	1 cut(s)	308
HaeII	RGCGCY	3 cut(s)	252, 546, 822
HapII	CCGG	7 cut(s)	252, 270, 540, 612, 720, 828, 1115
HgaI	GACGC	3 cut(s)	327, 374, 862
HhaI	GCGC	4 cut(s)	251, 338, 545, 821
Hin1I	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
Hin1II	CATG	2 cut(s)	550, 1112
Hin6I	GCGC	4 cut(s)	249, 336, 543, 819
HinP1I	GCGC	4 cut(s)	249, 336, 543, 819
HinfI	GANTC	4 cut(s)	12, 886, 949, 975
HpaII	CCGG	7 cut(s)	252, 270, 540, 612, 720, 828, 1115
HphI	GGTGA	3 cut(s)	94, 271, 952
Hpy166II	GTNNAC	2 cut(s)	349, 460
Hpy188I	TCNGA	8 cut(s)	82, 343, 707, 768, 804, 891, 934, 954
Hpy188III	TCNNGA	6 cut(s)	313, 325, 376, 727, 1045, 1081
Hpy8I	GTNNAC	2 cut(s)	349, 460
Hpy99I	CGWCG	4 cut(s)	368, 437, 665, 856
HpyAV	CCTTC	6 cut(s)	286, 370, 391, 751, 956, 1081
HpyCH4III	ACNGT	2 cut(s)	940, 1010
HpyCH4V	TGCA	3 cut(s)	607, 919, 1096
HpyF3I	CTNAG	3 cut(s)	704, 767, 888
Hsp92I	GRCGYC	5 cut(s)	249, 366, 543, 819, 854
Hsp92II	CATG	2 cut(s)	550, 1112
HspAI	GCGC	4 cut(s)	249, 336, 543, 819
KasI	GGCGCC	3 cut(s)	248, 542, 818
KroI	GCCGGC	2 cut(s)	251, 539
KroNI	GCCGGC	2 cut(s)	253, 541
Ksp22I	TGATCA	1 cut(s)	591
KspI	CCGCGG	1 cut(s)	762
Kzo9I	GATC	3 cut(s)	519, 591, 648
LmnI	GCTCC	7 cut(s)	272, 327, 443, 586, 793, 830, 1117
Lsp1109I	GCAGC	2 cut(s)	610, 895
LweI	GCATC	3 cut(s)	273, 426, 594
MaeI	CTAG	1 cut(s)	1053
MalI	GATC	3 cut(s)	521, 593, 650
MbiI	CCGCTC	1 cut(s)	235
MboI	GATC	3 cut(s)	519, 591, 648
MflI	RGATCY	1 cut(s)	648
MhlI	GDGCHC	3 cut(s)	241, 582, 798
MluCI	AATT	2 cut(s)	500, 1101
Mly113I	GGCGCC	3 cut(s)	249, 543, 819
MlyI	GAGTC	1 cut(s)	880
MmeI	TCCRAC	1 cut(s)	204
MreI	CGCCGGCG	2 cut(s)	251, 539
MroNI	GCCGGC	2 cut(s)	251, 539
MslI	CAYNNNNRTG	1 cut(s)	575
MspA1I	CMGCKG	4 cut(s)	414, 601, 761, 859
MspI	CCGG	7 cut(s)	252, 270, 540, 612, 720, 828, 1115
MspR9I	CCNGG	4 cut(s)	386, 613, 631, 721
MvaI	CCWGG	2 cut(s)	386, 631
MvnI	CGCG	2 cut(s)	338, 761
NaeI	GCCGGC	2 cut(s)	253, 541
NarI	GGCGCC	3 cut(s)	249, 543, 819
NciI	CCSGG	2 cut(s)	613, 721
NcoI	CCATGG	1 cut(s)	546
NdeII	GATC	3 cut(s)	519, 591, 648
NgoMIV	GCCGGC	2 cut(s)	251, 539
NlaIII	CATG	2 cut(s)	550, 1112
NmeAIII	GCCGAG	2 cut(s)	818, 1020
PaqCI	CACCTGC	2 cut(s)	479, 625
PcsI	WCGNNNNNNNCGW	1 cut(s)	471
PdiI	GCCGGC	2 cut(s)	253, 541
PfeI	GAWTC	3 cut(s)	12, 949, 975
PflFI	GACNNNGTC	1 cut(s)	368
PflMI	CCANNNNNTGG	1 cut(s)	171
PleI	GAGTC	1 cut(s)	880
PluTI	GGCGCC	3 cut(s)	252, 546, 822
PpsI	GAGTC	1 cut(s)	880
PpuMI	RGGWCCY	1 cut(s)	627
Psp5II	RGGWCCY	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	384, 629
PspGI	CCWGG	2 cut(s)	384, 629
PspOMI	GGGCCC	1 cut(s)	237
PspPI	GGNCC	8 cut(s)	174, 237, 238, 615, 627, 673, 784, 992
PspPPI	RGGWCCY	1 cut(s)	627
PstNI	CAGNNNCTG	3 cut(s)	630, 952, 1014
PsuI	RGATCY	1 cut(s)	648
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	749, 1034
RsaNI	GTAC	2 cut(s)	748, 1033
RseI	CAYNNNNRTG	1 cut(s)	575
SacII	CCGCGG	1 cut(s)	762
Sau3AI	GATC	3 cut(s)	519, 591, 648
Sau96I	GGNCC	8 cut(s)	174, 237, 238, 615, 627, 673, 784, 992
ScaI	AGTACT	1 cut(s)	749
SchI	GAGTC	1 cut(s)	880
ScrFI	CCNGG	4 cut(s)	386, 613, 631, 721
SduI	GDGCHC	3 cut(s)	241, 582, 798
SfaNI	GCATC	3 cut(s)	273, 426, 594
SfoI	GGCGCC	3 cut(s)	250, 544, 820
Sfr303I	CCGCGG	1 cut(s)	762
SgrAI	CRCCGGYG	2 cut(s)	251, 539
SgrBI	CCGCGG	1 cut(s)	762
SinI	GGWCC	1 cut(s)	627
SmiMI	CAYNNNNRTG	1 cut(s)	575
SmlI	CTYRAG	2 cut(s)	374, 727
SmoI	CTYRAG	2 cut(s)	374, 727
Sse9I	AATT	2 cut(s)	500, 1101
SspDI	GGCGCC	3 cut(s)	248, 542, 818
SspMI	CTAG	1 cut(s)	1053
StyD4I	CCNGG	4 cut(s)	384, 611, 629, 719
StyI	CCWWGG	5 cut(s)	195, 390, 546, 582, 822
TaaI	ACNGT	2 cut(s)	940, 1010
TaqI	TCGA	6 cut(s)	231, 303, 363, 654, 744, 1044
TasI	AATT	2 cut(s)	500, 1101
TatI	WGTACW	1 cut(s)	747
TauI	GCSGC	9 cut(s)	63, 66, 258, 261, 264, 417, 761, 819, 859
TfiI	GAWTC	3 cut(s)	12, 949, 975
TscAI	CASTG	1 cut(s)	1015
TseI	GCWGC	2 cut(s)	598, 908
TspDTI	ATGAA	1 cut(s)	227
TspGWI	ACGGA	1 cut(s)	214
TspRI	CASTG	1 cut(s)	1015
Tth111I	GACNNNGTC	1 cut(s)	368
Van91I	CCANNNNNTGG	1 cut(s)	171
VpaK11BI	GGWCC	1 cut(s)	627
XcmI	CCANNNNNNNNNTGG	1 cut(s)	397
XmiI	GTMKAC	2 cut(s)	348, 459
XspI	CTAG	1 cut(s)	1053
ZrmI	AGTACT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.