Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Reverse (-)

16918489 .. 16921596

Gene Structure 3108 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42320.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1140 bp

ATGGAGCAGATACATTCTTTGGTACATCGACATCCAGATAAGCTCTCGATTGAGTTGATTAAATCGGGAAACAAAGGCTACAATGCAGAGGTCAATGTGGTAACTTATTGTCGCGGTGGTAAAGAGAGTGATGACAGATCAAACTTTAGGATTCTTCTTACTTTTGGTCAGCATGGGAGAGAGCTTATCACCTCTGAACTTGCTTTTCGGATTTTGTCAATTTTGAGCGAAGAACAGTTCTTACCAAATAAAAACGGAGGAATCCTGAAAAACACATTAGACAAACTAGTCATAAAAATGGTTCCTATAGAAAACCCGAATGGTCGCAAACGTGTTGAATCTGGAGATCTTTGTGAACGAAGAAATGGAAGAGGAGTTGACCTGAACCGAAATTGGGGTGTTGACTGGGGCAAGAAAGAAAAGGATTATGATCCATCTGAAGAGAATCCAGGAACTGCTCCGTTTAGTGAGCCCGAAACTCAAATAATGCGGAAGCTAGCCATATCATTTGATCCTCACATATGGATAAATGTGCATTCTGGAATGGAGGCTTTATTTATGCCGTATGACCACAAAAACATAACCCCAGAGGGATTACCTTCACAGAAAATGAGGACCTTACTTGAAAAACTTAACAAATTTCATTGTCACGACCGCTGCATGATTGGATCTGGCGGCGGCTCTGTTGGGTATTTGGCACATGGTACAGCTACAGATTATATCTATGATGTTGTAAAGGCACCCATGGCATTCACCTTTGAGATCTATGGGGACAACCAAACTGCTTCAAGAGATTGCTTTAAAATGTTCAACCCTGTTGATCTACCCAATTTCAAGAGAGTTCTTAATGACTGGTCTGCTGCATTCTTCACGATTTTCCAACTGGGACCGCTCCACTTAGACGGAAACACTTCCAAAGCTGCAGACAAATGGGTGTCTATAGACGAGTATTTGGATGGCTACTTGGTGGAAAGGAAGAACAGATATGGGAAAAACATGGAAGTGATCGATGTCGGAATGCAAGAGATAAAAACTTACTTCAGGCTCTTCTTGTTGTCTTCAGTACTTCTGATGTTCATGTTCTGTTCCAGGATAGCGAAGAGCAAGTATAGTAGAAACTCCATGCCTGTCTTGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

379

Amino Acids

43.28

Weight (kDa)

8.1

Isoelectric Point (pI)

38.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M14	PF00246	55 - 311	6.8e-27	Zinc carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	739
AccBSI	CCGCTC	1 cut(s)	892
AccII	CGCG	1 cut(s)	114
AciI	CCGC	6 cut(s)	114, 490, 655, 675, 678, 890
AclWI	GGATC	3 cut(s)	425, 506, 676
AcsI	RAATTY	1 cut(s)	638
AcuI	CTGAAG	3 cut(s)	459, 1024, 1044
AfaI	GTAC	3 cut(s)	24, 706, 1065
AfiI	CCNNNNNNNGG	1 cut(s)	394
AflIII	ACRYGT	1 cut(s)	331
AgsI	TTSAA	5 cut(s)	338, 626, 789, 811, 835
AhlI	ACTAGT	1 cut(s)	286
AjnI	CCWGG	2 cut(s)	448, 1088
AluBI	AGCT	5 cut(s)	43, 184, 496, 710, 920
AluI	AGCT	5 cut(s)	43, 184, 496, 710, 920
AlwI	GGATC	3 cut(s)	425, 506, 676
AlwNI	CAGNNNCTG	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	657, 860, 920
ApoI	RAATTY	1 cut(s)	638
Asp700I	GAANNNNTTC	1 cut(s)	910
AspS9I	GGNCC	2 cut(s)	615, 887
AsuHPI	GGTGA	2 cut(s)	181, 745
AsuNHI	GCTAGC	1 cut(s)	496
AvaII	GGWCC	2 cut(s)	615, 887
BanI	GGYRCC	1 cut(s)	739
BanII	GRGCYC	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	1050
BbvI	GCAGC	3 cut(s)	644, 847, 907
BccI	CCATC	2 cut(s)	442, 950
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	2 cut(s)	450, 1090
BcuI	ACTAGT	1 cut(s)	286
BfaI	CTAG	2 cut(s)	287, 497
BfmI	CTRYAG	4 cut(s)	306, 711, 921, 939
BglII	AGATCT	2 cut(s)	346, 762
BisI	GCNGC	5 cut(s)	658, 676, 679, 861, 921
BlsI	GCNGC	5 cut(s)	659, 677, 680, 862, 922
BmcAI	AGTACT	1 cut(s)	1065
Bme1390I	CCNGG	2 cut(s)	450, 1090
Bme18I	GGWCC	2 cut(s)	615, 887
BmgT120I	GGNCC	2 cut(s)	615, 887
BmiI	GGNNCC	3 cut(s)	303, 741, 888
BmrFI	CCNGG	2 cut(s)	450, 1090
BmrI	ACTGGG	2 cut(s)	415, 893
BmtI	GCTAGC	1 cut(s)	500
BmuI	ACTGGG	2 cut(s)	415, 893
BpiI	GAAGAC	1 cut(s)	1050
BpmI	CTGGAG	1 cut(s)	363
Bsa29I	ATCGAT	1 cut(s)	1008
BsaBI	GATNNNNATC	1 cut(s)	429
BsaJI	CCNNGG	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	3 cut(s)	410, 857, 888
Bse8I	GATNNNNATC	1 cut(s)	429
BseBI	CCWGG	2 cut(s)	450, 1090
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	2 cut(s)	31, 961
BseJI	GATNNNNATC	1 cut(s)	429
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseNI	ACTGG	3 cut(s)	410, 857, 888
BseRI	GAGGAG	1 cut(s)	387
BseXI	GCAGC	3 cut(s)	644, 847, 907
Bsh1236I	CGCG	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	655
BshNI	GGYRCC	1 cut(s)	739
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	655
BslFI	GGGAC	2 cut(s)	785, 900
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmFI	GGGAC	2 cut(s)	785, 900
BsmI	GAATGC	4 cut(s)	535, 749, 863, 1023
Bsp1286I	GDGCHC	1 cut(s)	474
Bsp143I	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
Bsp19I	CCATGG	1 cut(s)	744
BspACI	CCGC	6 cut(s)	114, 490, 655, 675, 678, 890
BspDI	ATCGAT	1 cut(s)	1008
BspFNI	CGCG	1 cut(s)	114
BspLI	GGNNCC	3 cut(s)	303, 741, 888
BspMAI	CTGCAG	1 cut(s)	925
BspOI	GCTAGC	1 cut(s)	500
BspPI	GGATC	3 cut(s)	425, 506, 676
BspQI	GCTCTTC	2 cut(s)	1052, 1094
BspT107I	GGYRCC	1 cut(s)	739
BsrBI	CCGCTC	1 cut(s)	892
BsrI	ACTGG	3 cut(s)	410, 857, 888
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
BssT1I	CCWWGG	1 cut(s)	744
Bst2UI	CCWGG	2 cut(s)	450, 1090
Bst4CI	ACNGT	1 cut(s)	237
Bst6I	CTCTTC	4 cut(s)	364, 435, 1052, 1094
BstC8I	GCNNGC	1 cut(s)	498
BstDEI	CTNAG	1 cut(s)	898
BstDSI	CCRYGG	1 cut(s)	744
BstF5I	GGATG	2 cut(s)	31, 961
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	8 cut(s)	140, 349, 433, 514, 671, 765, 823, 1008
BstMBI	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
BstMCI	CGRYCG	1 cut(s)	655
BstMWI	GCNNNNNNNGC	2 cut(s)	746, 1132
BstNI	CCWGG	2 cut(s)	450, 1090
BstSCI	CCNGG	2 cut(s)	448, 1088
BstSFI	CTRYAG	4 cut(s)	306, 711, 921, 939
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	644, 847, 907
BstV2I	GAAGAC	1 cut(s)	1050
BstX2I	RGATCY	3 cut(s)	346, 668, 762
BstYI	RGATCY	3 cut(s)	346, 668, 762
Bsu15I	ATCGAT	1 cut(s)	1008
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	1 cut(s)	744
BtsCI	GGATG	2 cut(s)	31, 961
Cac8I	GCNNGC	1 cut(s)	498
CaiI	CAGNNNCTG	1 cut(s)	455
Cfr13I	GGNCC	2 cut(s)	615, 887
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	3 cut(s)	23, 705, 1064
CviAII	CATG	8 cut(s)	173, 661, 701, 745, 997, 1078, 1123, 1137
CviQI	GTAC	3 cut(s)	23, 705, 1064
DdeI	CTNAG	1 cut(s)	898
DpnI	GATC	8 cut(s)	139, 348, 432, 513, 670, 764, 822, 1007
DpnII	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
DraI	TTTAAA	1 cut(s)	802
DrdI	GACNNNNNNGTC	1 cut(s)	287
DseDI	GACNNNNNNGTC	1 cut(s)	287
Eam1104I	CTCTTC	4 cut(s)	364, 435, 1052, 1094
EarI	CTCTTC	4 cut(s)	364, 435, 1052, 1094
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	615, 887
Eco57I	CTGAAG	3 cut(s)	459, 1024, 1044
EcoO109I	RGGNCCY	1 cut(s)	615
EcoRII	CCWGG	2 cut(s)	448, 1088
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	8 cut(s)	176, 664, 704, 748, 1000, 1081, 1126, 1140
FaqI	GGGAC	2 cut(s)	785, 900
FatI	CATG	8 cut(s)	172, 660, 700, 744, 996, 1077, 1122, 1136
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	5 cut(s)	658, 676, 679, 861, 921
FokI	GGATG	2 cut(s)	18, 968
FriOI	GRGCYC	1 cut(s)	474
Fsp4HI	GCNGC	5 cut(s)	658, 676, 679, 861, 921
FspBI	CTAG	2 cut(s)	287, 497
GluI	GCNGC	5 cut(s)	658, 676, 679, 861, 921
GsuI	CTGGAG	1 cut(s)	363
Hin1II	CATG	8 cut(s)	176, 664, 704, 748, 1000, 1081, 1126, 1140
HincII	GTYRAC	2 cut(s)	379, 403
HindII	GTYRAC	2 cut(s)	379, 403
HinfI	GANTC	4 cut(s)	151, 261, 338, 445
HphI	GGTGA	2 cut(s)	181, 745
Hpy166II	GTNNAC	3 cut(s)	356, 379, 403
Hpy188I	TCNGA	5 cut(s)	196, 210, 439, 1016, 1071
Hpy8I	GTNNAC	3 cut(s)	356, 379, 403
HpyAV	CCTTC	1 cut(s)	609
HpyCH4III	ACNGT	1 cut(s)	237
HpyCH4IV	ACGT	1 cut(s)	331
HpyCH4V	TGCA	6 cut(s)	86, 535, 660, 863, 923, 1021
HpyF10VI	GCNNNNNNNGC	2 cut(s)	746, 1132
HpyF3I	CTNAG	1 cut(s)	898
HpySE526I	ACGT	1 cut(s)	331
Hsp92II	CATG	8 cut(s)	176, 664, 704, 748, 1000, 1081, 1126, 1140
Kzo9I	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
LguI	GCTCTTC	2 cut(s)	1052, 1094
LmnI	GCTCC	3 cut(s)	4, 463, 897
Lsp1109I	GCAGC	3 cut(s)	644, 847, 907
MaeI	CTAG	2 cut(s)	287, 497
MaeII	ACGT	1 cut(s)	331
MaeIII	GTNAC	2 cut(s)	100, 647
MalI	GATC	8 cut(s)	139, 348, 432, 513, 670, 764, 822, 1007
MbiI	CCGCTC	1 cut(s)	892
MboI	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
MflI	RGATCY	3 cut(s)	346, 668, 762
MhlI	GDGCHC	1 cut(s)	474
MluCI	AATT	4 cut(s)	219, 391, 638, 829
MmeI	TCCRAC	2 cut(s)	904, 994
MnlI	CCTC	8 cut(s)	82, 202, 251, 365, 525, 541, 583, 606
MroXI	GAANNNNTTC	1 cut(s)	910
MseI	TTAA	4 cut(s)	60, 633, 801, 846
MslI	CAYNNNNRTG	2 cut(s)	296, 1001
MspA1I	CMGCKG	1 cut(s)	657
MspR9I	CCNGG	2 cut(s)	450, 1090
Mva1269I	GAATGC	4 cut(s)	535, 749, 863, 1023
MvaI	CCWGG	2 cut(s)	450, 1090
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	746, 1132
NcoI	CCATGG	1 cut(s)	744
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
NheI	GCTAGC	1 cut(s)	496
NlaIII	CATG	8 cut(s)	176, 664, 704, 748, 1000, 1081, 1126, 1140
NlaIV	GGNNCC	3 cut(s)	303, 741, 888
NmuCI	GTSAC	1 cut(s)	647
PciSI	GCTCTTC	2 cut(s)	1052, 1094
PctI	GAATGC	4 cut(s)	535, 749, 863, 1023
PdmI	GAANNNNTTC	1 cut(s)	910
PfeI	GAWTC	4 cut(s)	151, 261, 338, 445
PfoI	TCCNGGA	2 cut(s)	448, 1088
PkrI	GCNGC	5 cut(s)	659, 677, 680, 862, 922
PpuMI	RGGWCCY	1 cut(s)	615
Psp5II	RGGWCCY	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	448, 1088
PspGI	CCWGG	2 cut(s)	448, 1088
PspN4I	GGNNCC	3 cut(s)	303, 741, 888
PspPI	GGNCC	2 cut(s)	615, 887
PspPPI	RGGWCCY	1 cut(s)	615
PsrI	GAACNNNNNNTAC	2 cut(s)	225, 257
PstI	CTGCAG	1 cut(s)	925
PstNI	CAGNNNCTG	1 cut(s)	455
PsuI	RGATCY	3 cut(s)	346, 668, 762
RsaI	GTAC	3 cut(s)	24, 706, 1065
RsaNI	GTAC	3 cut(s)	23, 705, 1064
RseI	CAYNNNNRTG	2 cut(s)	296, 1001
SapI	GCTCTTC	2 cut(s)	1052, 1094
SaqAI	TTAA	4 cut(s)	60, 633, 801, 846
SatI	GCNGC	5 cut(s)	658, 676, 679, 861, 921
Sau3AI	GATC	8 cut(s)	137, 346, 430, 511, 668, 762, 820, 1005
Sau96I	GGNCC	2 cut(s)	615, 887
ScaI	AGTACT	1 cut(s)	1065
ScrFI	CCNGG	2 cut(s)	450, 1090
SduI	GDGCHC	1 cut(s)	474
SfcI	CTRYAG	4 cut(s)	306, 711, 921, 939
SinI	GGWCC	2 cut(s)	615, 887
SmiMI	CAYNNNNRTG	2 cut(s)	296, 1001
SpeI	ACTAGT	1 cut(s)	286
Sse9I	AATT	4 cut(s)	219, 391, 638, 829
SsiI	CCGC	6 cut(s)	114, 490, 655, 675, 678, 890
SspMI	CTAG	2 cut(s)	287, 497
StyD4I	CCNGG	2 cut(s)	448, 1088
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	1 cut(s)	237
TaiI	ACGT	1 cut(s)	334
TaqI	TCGA	3 cut(s)	28, 47, 1008
TasI	AATT	4 cut(s)	219, 391, 638, 829
TatI	WGTACW	1 cut(s)	1063
TauI	GCSGC	2 cut(s)	678, 681
TfiI	GAWTC	4 cut(s)	151, 261, 338, 445
Tru1I	TTAA	4 cut(s)	60, 633, 801, 846
Tru9I	TTAA	4 cut(s)	60, 633, 801, 846
TseFI	GTSAC	1 cut(s)	647
TseI	GCWGC	3 cut(s)	657, 860, 920
Tsp45I	GTSAC	1 cut(s)	647
TspDTI	ATGAA	2 cut(s)	632, 1066
TspGWI	ACGGA	3 cut(s)	270, 450, 918
VpaK11BI	GGWCC	2 cut(s)	615, 887
XapI	RAATTY	1 cut(s)	638
XmnI	GAANNNNTTC	1 cut(s)	910
XspI	CTAG	2 cut(s)	287, 497
ZrmI	AGTACT	1 cut(s)	1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.