Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Forward (+)

48243809 .. 48244698

Gene Structure 890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0329400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGAAATCGCTTAGGACTTCAAGACGGACCTGCGTTTCCAGAGCCACGCCGTGTTGGCGCTATAGGACGCGGTGGAGGCCCATCTTGTTGGGTTGTTTGAGGAGACTAATCTGTGCTCCATTCATGCCAAGAGTGTCACAATTATGCCCAAGGATTATTCCATGTGCTAGGAGAATCAGGGGTGAGAGGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

64

Amino Acids

7.64

Weight (kDa)

11.89

Isoelectric Point (pI)

76.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	38
AccII	CGCG	1 cut(s)	70
AciI	CCGC	1 cut(s)	70
AdeI	CACNNNGTG	1 cut(s)	51
AgsI	TTSAA	1 cut(s)	21
Alw21I	GWGCWC	1 cut(s)	118
Alw26I	GTCTC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	77
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	27, 78
AsuHPI	GGTGA	1 cut(s)	194
AvaII	GGWCC	1 cut(s)	27
Bbv12I	GWGCWC	1 cut(s)	118
BccI	CCATC	1 cut(s)	89
BceAI	ACGGC	1 cut(s)	34
BcoDI	GTCTC	1 cut(s)	97
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	1 cut(s)	61
BfoI	RGCGCY	1 cut(s)	61
BfuAI	ACCTGC	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	55
Bme18I	GGWCC	1 cut(s)	27
BmgT120I	GGNCC	2 cut(s)	27, 78
Bpu10I	CCTNAGC	1 cut(s)	11
BsaJI	CCNNGG	1 cut(s)	149
BseDI	CCNNGG	1 cut(s)	149
BseRI	GAGGAG	1 cut(s)	115
Bsh1236I	CGCG	1 cut(s)	70
BshFI	GGCC	1 cut(s)	79
BsiHKAI	GWGCWC	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	97
BsnI	GGCC	1 cut(s)	79
Bsp1286I	GDGCHC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	79
BspFNI	CGCG	1 cut(s)	70
BspMI	ACCTGC	1 cut(s)	38
BssECI	CCNNGG	1 cut(s)	149
BssT1I	CCWWGG	1 cut(s)	149
BstDEI	CTNAG	1 cut(s)	11
BstFNI	CGCG	1 cut(s)	70
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstMAI	GTCTC	1 cut(s)	97
BstMWI	GCNNNNNNNGC	2 cut(s)	55, 76
BstSFI	CTRYAG	1 cut(s)	61
BstUI	CGCG	1 cut(s)	70
BstXI	CCANNNNNNTGG	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	79
BveI	ACCTGC	1 cut(s)	38
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	2 cut(s)	27, 78
CseI	GACGC	1 cut(s)	76
CviAII	CATG	2 cut(s)	124, 162
CviJI	RGCY	3 cut(s)	44, 79, 191
CviKI_1	RGCY	3 cut(s)	44, 79, 191
DdeI	CTNAG	1 cut(s)	11
DraIII	CACNNNGTG	1 cut(s)	51
Eco130I	CCWWGG	1 cut(s)	149
Eco47I	GGWCC	1 cut(s)	27
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	2 cut(s)	127, 165
FaiI	YATR	4 cut(s)	63, 125, 145, 163
FatI	CATG	2 cut(s)	123, 161
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	59
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	76
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	2 cut(s)	127, 165
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	1 cut(s)	174
HphI	GGTGA	1 cut(s)	194
Hpy188III	TCNNGA	2 cut(s)	21, 39
HpyF10VI	GCNNNNNNNGC	2 cut(s)	55, 76
HpyF3I	CTNAG	1 cut(s)	11
Hsp92II	CATG	2 cut(s)	127, 165
HspAI	GCGC	1 cut(s)	58
LmnI	GCTCC	1 cut(s)	121
LpnPI	CCDG	3 cut(s)	43, 52, 163
MaeI	CTAG	1 cut(s)	168
MaeIII	GTNAC	1 cut(s)	135
MhlI	GDGCHC	1 cut(s)	118
MluCI	AATT	1 cut(s)	140
MnlI	CCTC	3 cut(s)	69, 93, 180
MseI	TTAA	1 cut(s)	193
MslI	CAYNNNNRTG	1 cut(s)	142
MvnI	CGCG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	55, 76
NlaIII	CATG	2 cut(s)	127, 165
NmuCI	GTSAC	1 cut(s)	135
PfeI	GAWTC	1 cut(s)	174
PspPI	GGNCC	2 cut(s)	27, 78
RseI	CAYNNNNRTG	1 cut(s)	142
SaqAI	TTAA	1 cut(s)	193
Sau96I	GGNCC	2 cut(s)	27, 78
SduI	GDGCHC	1 cut(s)	118
SetI	ASST	1 cut(s)	32
SfcI	CTRYAG	1 cut(s)	61
SinI	GGWCC	1 cut(s)	27
SmiMI	CAYNNNNRTG	1 cut(s)	142
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	168
StyI	CCWWGG	1 cut(s)	149
TasI	AATT	1 cut(s)	140
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	1 cut(s)	193
Tru9I	TTAA	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	135
Tsp45I	GTSAC	1 cut(s)	135
TspDTI	ATGAA	2 cut(s)	17, 112
TspGWI	ACGGA	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	27
XspI	CTAG	1 cut(s)	168

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.