Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Reverse (-)

15404151 .. 15405213

Gene Structure 1063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1076900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGCCGTATGACCATAAGAACACAACCCCAGATGGACTTTCCTCCCACCAGATGAAGTCATTGCTTGAAGAACTCAACCAACTGCATTTCCAAAAGCGTTGCATGGTTGGGTCTGGTGGAGGTTCTGTTGGGTACCTGGCACATGGGACAGCAACTGATTTTATGTTCGACATTGTAAAGGTGCCAATGGCTTTCACCTTTGAGATATATGGAGATGGAGCAGCCTCATCAAGAGATTGCTTCAAAATGTTCAATCCCACAGAATTGGGTACCTTTCAATGTATGTCAGTTTTTTGGTCATCTTTTAAGTTTCTGCATATATTTGAAGGGTCAGTTAATGAAAACAGTATAAATCTTTTCGCTTTCAGAGAGTTCTCAATGAATGGTCAGCTGCATTTTTCACAATTTTTTAAATTGGGGCCAGAGCAGCTTGGTGAAAATTATTCAAAGTCTTCTGTGCCCACCTTATTAGACAAGTGGGTATCCATAGATGAGTATCTTGAAGGGTACTTAGTCGAGAGGAGTAGTAGATACGGAAAGAAGATGGAGGTGCTTGAACTAGGAATGCAGGAGATAAGAACATATTTCAGGCTCTTCTTGTTATCGTCTGTTCTGTTAATGTTCATGTTCTGTTCCAGAATTTCAAAAAGCAAGTGTGCCAGACCAATTGTTTCTGCTATTGCAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

230

Amino Acids

26.1

Weight (kDa)

6.59

Isoelectric Point (pI)

33.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	132, 269
AccB1I	GGYRCC	3 cut(s)	132, 181, 269
AcsI	RAATTY	1 cut(s)	639
AfaI	GTAC	3 cut(s)	134, 271, 509
AgsI	TTSAA	9 cut(s)	68, 244, 253, 278, 326, 447, 503, 557, 645
AjnI	CCWGG	1 cut(s)	135
AluBI	AGCT	2 cut(s)	391, 430
AluI	AGCT	2 cut(s)	391, 430
AlwNI	CAGNNNCTG	1 cut(s)	155
AoxI	GGCC	1 cut(s)	419
ApeKI	GCWGC	3 cut(s)	221, 391, 427
ApoI	RAATTY	1 cut(s)	639
Asp718I	GGTACC	2 cut(s)	132, 269
AspS9I	GGNCC	1 cut(s)	419
AsuHPI	GGTGA	2 cut(s)	187, 446
BaeGI	GKGCMC	1 cut(s)	462
BanI	GGYRCC	3 cut(s)	132, 181, 269
BbsI	GAAGAC	1 cut(s)	444
BbvI	GCAGC	3 cut(s)	233, 378, 439
BccI	CCATC	3 cut(s)	26, 209, 538
BciT130I	CCWGG	1 cut(s)	137
BciVI	GTATCC	1 cut(s)	493
BfaI	CTAG	1 cut(s)	560
BfuI	GTATCC	1 cut(s)	493
BisI	GCNGC	3 cut(s)	222, 392, 428
BlsI	GCNGC	3 cut(s)	223, 393, 429
Bme1390I	CCNGG	1 cut(s)	137
BmgT120I	GGNCC	1 cut(s)	419
BmiI	GGNNCC	4 cut(s)	134, 183, 271, 420
BmrFI	CCNGG	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	444
BsaBI	GATNNNNATC	1 cut(s)	495
BsaXI	ACNNNNNCTCC	2 cut(s)	111, 141
Bse3DI	GCAATG	1 cut(s)	59
Bse8I	GATNNNNATC	1 cut(s)	495
BseBI	CCWGG	1 cut(s)	137
BseJI	GATNNNNATC	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	59
BseRI	GAGGAG	1 cut(s)	535
BseSI	GKGCMC	1 cut(s)	462
BseXI	GCAGC	3 cut(s)	233, 378, 439
BshFI	GGCC	1 cut(s)	421
BshNI	GGYRCC	3 cut(s)	132, 181, 269
BslFI	GGGAC	1 cut(s)	160
BsmFI	GGGAC	1 cut(s)	160
BsmI	GAATGC	1 cut(s)	570
BsnI	GGCC	1 cut(s)	421
Bsp1286I	GDGCHC	1 cut(s)	462
BspANI	GGCC	1 cut(s)	421
BspLI	GGNNCC	4 cut(s)	134, 183, 271, 420
BspQI	GCTCTTC	1 cut(s)	599
BspT107I	GGYRCC	3 cut(s)	132, 181, 269
BsrDI	GCAATG	1 cut(s)	59
Bst2UI	CCWGG	1 cut(s)	137
Bst4CI	ACNGT	1 cut(s)	347
Bst6I	CTCTTC	1 cut(s)	599
BstDEI	CTNAG	1 cut(s)	511
BstMWI	GCNNNNNNNGC	1 cut(s)	427
BstNI	CCWGG	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	135
BstSLI	GKGCMC	1 cut(s)	462
BstV1I	GCAGC	3 cut(s)	233, 378, 439
BstV2I	GAAGAC	1 cut(s)	444
BstXI	CCANNNNNNTGG	1 cut(s)	265
BsuI	GTATCC	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	421
CaiI	CAGNNNCTG	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	419
Csp6I	GTAC	3 cut(s)	133, 270, 508
CviAII	CATG	3 cut(s)	103, 143, 625
CviJI	RGCY	6 cut(s)	191, 224, 391, 421, 430, 592
CviKI_1	RGCY	6 cut(s)	191, 224, 391, 421, 430, 592
CviQI	GTAC	3 cut(s)	133, 270, 508
DdeI	CTNAG	1 cut(s)	511
DraI	TTTAAA	1 cut(s)	412
Eam1104I	CTCTTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	599
EcoRII	CCWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	106, 146, 628
FaqI	GGGAC	1 cut(s)	160
FatI	CATG	3 cut(s)	102, 142, 624
Fnu4HI	GCNGC	3 cut(s)	222, 392, 428
Fsp4HI	GCNGC	3 cut(s)	222, 392, 428
FspBI	CTAG	1 cut(s)	560
GluI	GCNGC	3 cut(s)	222, 392, 428
HaeIII	GGCC	1 cut(s)	421
Hin1II	CATG	3 cut(s)	106, 146, 628
HphI	GGTGA	2 cut(s)	187, 446
Hpy188I	TCNGA	2 cut(s)	368, 689
Hpy188III	TCNNGA	4 cut(s)	231, 500, 517, 636
HpyAV	CCTTC	2 cut(s)	320, 497
HpyCH4III	ACNGT	1 cut(s)	347
HpyCH4V	TGCA	6 cut(s)	85, 102, 316, 394, 568, 683
HpyF10VI	GCNNNNNNNGC	1 cut(s)	427
HpyF3I	CTNAG	1 cut(s)	511
Hsp92II	CATG	3 cut(s)	106, 146, 628
KpnI	GGTACC	2 cut(s)	136, 273
LguI	GCTCTTC	1 cut(s)	599
LmnI	GCTCC	1 cut(s)	218
Lsp1109I	GCAGC	3 cut(s)	233, 378, 439
MaeI	CTAG	1 cut(s)	560
MboII	GAAGA	4 cut(s)	80, 444, 553, 586
MfeI	CAATTG	1 cut(s)	666
MhlI	GDGCHC	1 cut(s)	462
MluCI	AATT	6 cut(s)	263, 404, 413, 439, 639, 666
MnlI	CCTC	5 cut(s)	52, 113, 235, 513, 541
MseI	TTAA	4 cut(s)	306, 336, 411, 617
MspA1I	CMGCKG	1 cut(s)	391
MspR9I	CCNGG	1 cut(s)	137
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	570
MvaI	CCWGG	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	427
NlaIII	CATG	3 cut(s)	106, 146, 628
NlaIV	GGNNCC	4 cut(s)	134, 183, 271, 420
PciSI	GCTCTTC	1 cut(s)	599
PctI	GAATGC	1 cut(s)	570
PkrI	GCNGC	3 cut(s)	223, 393, 429
Psp6I	CCWGG	1 cut(s)	135
PspGI	CCWGG	1 cut(s)	135
PspN4I	GGNNCC	4 cut(s)	134, 183, 271, 420
PspPI	GGNCC	1 cut(s)	419
PstNI	CAGNNNCTG	1 cut(s)	155
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	3 cut(s)	134, 271, 509
RsaNI	GTAC	3 cut(s)	133, 270, 508
SapI	GCTCTTC	1 cut(s)	599
SaqAI	TTAA	4 cut(s)	306, 336, 411, 617
SatI	GCNGC	3 cut(s)	222, 392, 428
Sau96I	GGNCC	1 cut(s)	419
ScrFI	CCNGG	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	462
SetI	ASST	9 cut(s)	124, 138, 183, 200, 275, 393, 432, 467, 552
Sse9I	AATT	6 cut(s)	263, 404, 413, 439, 639, 666
SspMI	CTAG	1 cut(s)	560
StyD4I	CCNGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	347
TaqI	TCGA	2 cut(s)	168, 516
TasI	AATT	6 cut(s)	263, 404, 413, 439, 639, 666
Tru1I	TTAA	4 cut(s)	306, 336, 411, 617
Tru9I	TTAA	4 cut(s)	306, 336, 411, 617
TseI	GCWGC	3 cut(s)	221, 391, 427
TspDTI	ATGAA	4 cut(s)	68, 354, 395, 613
TspGWI	ACGGA	1 cut(s)	549
XapI	RAATTY	1 cut(s)	639
XspI	CTAG	1 cut(s)	560

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.