Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Reverse (-)

189545 .. 191543

Gene Structure 1999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g00210.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGAAAACCCAAACCATGGCTCATCTCCTTGTTCCTCCGATGACTGCCAATGCCATGGCTCATCTCCTTCCTCTCTCCTCTCCTTTATCCATCACTCTCTGCTTCTTTGCGTGGTTGCAAGCTTTCTTGGTCGTCCATGGCAATACTAATAACATCACCAATCCTTCTTCTTTCACCCCCATCAACCGCGATCTCTATCATTCCAGTGGGGATTTGATGGAAGAAATTAAAGCTCTCGTCTTTCGGCACCCAGACGAGCTCACTTTGGATACAATTAAATCTCGAAACAAGGGCTACTCTGCTGAGATCGCAATAGTTACCTATTGCCGGAGAAGGCAAGAGACTGATGACCAGCCAAAGTTACGGATCCTTCTTAGTTTTGGGCAGCATGGAAGGGAGCTTATTACATCCGAGCTTGCATTACGAATCCTATCAATCTTGAGTAAAGAACAGTTTCTACCCAACCTGGACCCAGCCTCCTTAGACAGTACCCTTGACAAGCTCTTGATAAAGGTGGTTCCAATGGAAAACTTAAATGGCCGTAGACTTGTTGAAGCAGGGGATCTCTGTGAGAGGAGAAATGGGAGGGGAGTTGATCCCAACCGTAATTGGAGCGTGGATTGGGGAAAAAAAGAGAAGGATTATGATCCATATGAGGAAAATCCTGGAACTGCTCCTTTCAGCGAGCCTGAAACTCAGATAATGCGGAAAGTTTCCATGTCATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

243

Amino Acids

27.42

Weight (kDa)

6.32

Isoelectric Point (pI)

42.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	246
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccI	GTMKAC	1 cut(s)	544
AccII	CGCG	1 cut(s)	189
AciI	CCGC	2 cut(s)	187, 706
AclWI	GGATC	5 cut(s)	361, 374, 570, 590, 641
AcoI	YGGCCR	1 cut(s)	538
AfaI	GTAC	1 cut(s)	490
AfiI	CCNNNNNNNGG	2 cut(s)	16, 327
AgsI	TTSAA	1 cut(s)	554
AjnI	CCWGG	2 cut(s)	465, 664
AluBI	AGCT	6 cut(s)	122, 233, 259, 400, 415, 502
AluI	AGCT	6 cut(s)	122, 233, 259, 400, 415, 502
Alw21I	GWGCWC	1 cut(s)	261
Alw26I	GTCTC	1 cut(s)	335
AlwI	GGATC	5 cut(s)	361, 374, 570, 590, 641
AoxI	GGCC	1 cut(s)	538
ApeKI	GCWGC	1 cut(s)	385
Asp700I	GAANNNNTTC	1 cut(s)	453
AspS9I	GGNCC	1 cut(s)	469
AsuHPI	GGTGA	2 cut(s)	148, 166
AvaII	GGWCC	1 cut(s)	469
BamHI	GGATCC	1 cut(s)	366
BanI	GGYRCC	1 cut(s)	246
BanII	GRGCYC	1 cut(s)	261
Bbv12I	GWGCWC	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	3 cut(s)	98, 188, 211
BceAI	ACGGC	1 cut(s)	525
BciT130I	CCWGG	2 cut(s)	467, 666
BciVI	GTATCC	1 cut(s)	262
BcoDI	GTCTC	1 cut(s)	335
BfuI	GTATCC	1 cut(s)	262
BisI	GCNGC	1 cut(s)	386
BlsI	GCNGC	1 cut(s)	387
Bme1390I	CCNGG	2 cut(s)	467, 666
Bme18I	GGWCC	1 cut(s)	469
BmgT120I	GGNCC	1 cut(s)	469
BmiI	GGNNCC	4 cut(s)	248, 368, 471, 519
BmrFI	CCNGG	2 cut(s)	467, 666
BpuEI	CTTGAG	1 cut(s)	460
BsaBI	GATNNNNATC	2 cut(s)	195, 645
BsaJI	CCNNGG	3 cut(s)	15, 54, 136
BsaXI	ACNNNNNCTCC	2 cut(s)	461, 491
Bsc4I	CCNNNNNNNGG	2 cut(s)	16, 327
Bse1I	ACTGG	1 cut(s)	204
Bse8I	GATNNNNATC	2 cut(s)	195, 645
BseBI	CCWGG	2 cut(s)	467, 666
BseDI	CCNNGG	3 cut(s)	15, 54, 136
BseGI	GGATG	1 cut(s)	407
BseJI	GATNNNNATC	2 cut(s)	195, 645
BseLI	CCNNNNNNNGG	2 cut(s)	16, 327
BseMII	CTCAG	2 cut(s)	294, 710
BseNI	ACTGG	1 cut(s)	204
BseRI	GAGGAG	2 cut(s)	67, 589
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	472
Bsh1236I	CGCG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	540
BshNI	GGYRCC	1 cut(s)	246
BsiHKAI	GWGCWC	1 cut(s)	261
BsiSI	CCGG	1 cut(s)	328
BslI	CCNNNNNNNGG	2 cut(s)	16, 327
BsmAI	GTCTC	1 cut(s)	335
BsnI	GGCC	1 cut(s)	540
Bsp1286I	GDGCHC	1 cut(s)	261
Bsp143I	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
Bsp19I	CCATGG	3 cut(s)	15, 54, 136
BspACI	CCGC	2 cut(s)	187, 706
BspANI	GGCC	1 cut(s)	540
BspCNI	CTCAG	2 cut(s)	295, 709
BspFNI	CGCG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	248, 368, 471, 519
BspPI	GGATC	5 cut(s)	361, 374, 570, 590, 641
BspT107I	GGYRCC	1 cut(s)	246
BsrI	ACTGG	1 cut(s)	204
BssECI	CCNNGG	3 cut(s)	15, 54, 136
BssMI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
BssT1I	CCWWGG	3 cut(s)	15, 54, 136
Bst2UI	CCWGG	2 cut(s)	467, 666
Bst4CI	ACNGT	3 cut(s)	453, 488, 605
BstC8I	GCNNGC	3 cut(s)	120, 417, 686
BstDEI	CTNAG	4 cut(s)	303, 374, 481, 696
BstDSI	CCRYGG	3 cut(s)	15, 54, 136
BstF5I	GGATG	1 cut(s)	407
BstFNI	CGCG	1 cut(s)	189
BstKTI	GATC	6 cut(s)	193, 309, 369, 565, 598, 649
BstMAI	GTCTC	1 cut(s)	335
BstMBI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
BstMWI	GCNNNNNNNGC	1 cut(s)	308
BstNI	CCWGG	2 cut(s)	467, 666
BstSCI	CCNGG	2 cut(s)	465, 664
BstUI	CGCG	1 cut(s)	189
BstV1I	GCAGC	1 cut(s)	397
BstX2I	RGATCY	2 cut(s)	366, 562
BstXI	CCANNNNNNTGG	1 cut(s)	55
BstYI	RGATCY	2 cut(s)	366, 562
BsuI	GTATCC	1 cut(s)	262
BsuRI	GGCC	1 cut(s)	540
BtgI	CCRYGG	3 cut(s)	15, 54, 136
BtsCI	GGATG	1 cut(s)	407
BtsIMutI	CAGTG	1 cut(s)	211
Cac8I	GCNNGC	3 cut(s)	120, 417, 686
Cfr13I	GGNCC	1 cut(s)	469
Csp6I	GTAC	1 cut(s)	489
CviAII	CATG	5 cut(s)	16, 55, 137, 389, 718
CviQI	GTAC	1 cut(s)	489
DdeI	CTNAG	4 cut(s)	303, 374, 481, 696
DpnI	GATC	6 cut(s)	192, 308, 368, 564, 597, 648
DpnII	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
EaeI	YGGCCR	1 cut(s)	538
Ecl136II	GAGCTC	1 cut(s)	259
Eco130I	CCWWGG	3 cut(s)	15, 54, 136
Eco24I	GRGCYC	1 cut(s)	261
Eco47I	GGWCC	1 cut(s)	469
Eco53kI	GAGCTC	1 cut(s)	259
EcoICRI	GAGCTC	1 cut(s)	259
EcoRII	CCWGG	2 cut(s)	465, 664
EcoT14I	CCWWGG	3 cut(s)	15, 54, 136
EcoT38I	GRGCYC	1 cut(s)	261
ErhI	CCWWGG	3 cut(s)	15, 54, 136
FaeI	CATG	5 cut(s)	19, 58, 140, 392, 721
FaiI	YATR	9 cut(s)	17, 56, 138, 390, 645, 652, 654, 719, 727
FatI	CATG	5 cut(s)	15, 54, 136, 388, 717
FauNDI	CATATG	1 cut(s)	652
FblI	GTMKAC	1 cut(s)	544
Fnu4HI	GCNGC	1 cut(s)	386
FokI	GGATG	1 cut(s)	394
FriOI	GRGCYC	1 cut(s)	261
Fsp4HI	GCNGC	1 cut(s)	386
GluI	GCNGC	1 cut(s)	386
GsaI	CCCAGC	1 cut(s)	476
HaeIII	GGCC	1 cut(s)	540
HapII	CCGG	1 cut(s)	328
Hin1II	CATG	5 cut(s)	19, 58, 140, 392, 721
HindIII	AAGCTT	1 cut(s)	120
HinfI	GANTC	1 cut(s)	426
HpaII	CCGG	1 cut(s)	328
HphI	GGTGA	2 cut(s)	148, 166
Hpy166II	GTNNAC	1 cut(s)	545
Hpy188I	TCNGA	3 cut(s)	39, 412, 699
Hpy188III	TCNNGA	3 cut(s)	282, 439, 505
Hpy8I	GTNNAC	1 cut(s)	545
HpyAV	CCTTC	6 cut(s)	77, 174, 327, 380, 387, 631
HpyCH4III	ACNGT	3 cut(s)	453, 488, 605
HpyCH4V	TGCA	2 cut(s)	118, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	308
HpyF3I	CTNAG	4 cut(s)	303, 374, 481, 696
Hsp92II	CATG	5 cut(s)	19, 58, 140, 392, 721
Kzo9I	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
LmnI	GCTCC	3 cut(s)	397, 612, 679
Lsp1109I	GCAGC	1 cut(s)	397
MaeIII	GTNAC	2 cut(s)	316, 360
MalI	GATC	6 cut(s)	192, 308, 368, 564, 597, 648
MboI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
MboII	GAAGA	2 cut(s)	159, 233
MflI	RGATCY	2 cut(s)	366, 562
MhlI	GDGCHC	1 cut(s)	261
MluCI	AATT	3 cut(s)	225, 273, 607
MnlI	CCTC	7 cut(s)	45, 81, 88, 487, 567, 579, 649
MroXI	GAANNNNTTC	1 cut(s)	453
MseI	TTAA	3 cut(s)	228, 276, 533
MslI	CAYNNNNRTG	1 cut(s)	204
MspI	CCGG	1 cut(s)	328
MspR9I	CCNGG	2 cut(s)	467, 666
MvaI	CCWGG	2 cut(s)	467, 666
MvnI	CGCG	1 cut(s)	189
MwoI	GCNNNNNNNGC	1 cut(s)	308
NcoI	CCATGG	3 cut(s)	15, 54, 136
NdeI	CATATG	1 cut(s)	652
NdeII	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
NlaIII	CATG	5 cut(s)	19, 58, 140, 392, 721
NlaIV	GGNNCC	4 cut(s)	248, 368, 471, 519
PdmI	GAANNNNTTC	1 cut(s)	453
PfeI	GAWTC	1 cut(s)	426
PflMI	CCANNNNNTGG	1 cut(s)	16
PfoI	TCCNGGA	1 cut(s)	664
PkrI	GCNGC	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	465, 664
PspFI	CCCAGC	1 cut(s)	472
PspGI	CCWGG	2 cut(s)	465, 664
PspN4I	GGNNCC	4 cut(s)	248, 368, 471, 519
PspPI	GGNCC	1 cut(s)	469
PsrI	GAACNNNNNNTAC	2 cut(s)	441, 473
PsuI	RGATCY	2 cut(s)	366, 562
RsaI	GTAC	1 cut(s)	490
RsaNI	GTAC	1 cut(s)	489
RseI	CAYNNNNRTG	1 cut(s)	204
SacI	GAGCTC	1 cut(s)	261
SaqAI	TTAA	3 cut(s)	228, 276, 533
SatI	GCNGC	1 cut(s)	386
Sau3AI	GATC	6 cut(s)	190, 306, 366, 562, 595, 646
Sau96I	GGNCC	1 cut(s)	469
ScrFI	CCNGG	2 cut(s)	467, 666
SduI	GDGCHC	1 cut(s)	261
SetI	ASST	9 cut(s)	124, 235, 261, 323, 402, 417, 468, 504, 516
SinI	GGWCC	1 cut(s)	469
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	1 cut(s)	439
SmoI	CTYRAG	1 cut(s)	439
Sse9I	AATT	3 cut(s)	225, 273, 607
SsiI	CCGC	2 cut(s)	187, 706
SstI	GAGCTC	1 cut(s)	261
StyD4I	CCNGG	2 cut(s)	465, 664
StyI	CCWWGG	3 cut(s)	15, 54, 136
TaaI	ACNGT	3 cut(s)	453, 488, 605
TaqI	TCGA	1 cut(s)	283
TasI	AATT	3 cut(s)	225, 273, 607
TfiI	GAWTC	1 cut(s)	426
Tru1I	TTAA	3 cut(s)	228, 276, 533
Tru9I	TTAA	3 cut(s)	228, 276, 533
TscAI	CASTG	1 cut(s)	211
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	379
TspRI	CASTG	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	16
VpaK11BI	GGWCC	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	544
XmnI	GAANNNNTTC	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.