Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Forward (+)

40183791 .. 40184706

Gene Structure 916 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0331800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGCTTCAAGAACTTCCAGCCTCAAATACTTCTCGCTACTAATTTTTGCACTCGCCATTGTTCAAATGACATTGGCAGGAGATCCAGACATTCTTAGTGACTTTATTGCGCCTCCAAATGGAACAGTAGATGGAAACTTCTTCACATACACCGGCATGCGTATTCTTGTTGGAGGAGACGTGCCCAAAACCTTCACAGTACTGAAGGCAACCTTGGCTGAGTTCCCAGCTCTTAATGGGCAGAGTGTTTCATATGCCGTCCTTGAATTCCCAGCTGGCACTACTAACCCACCACACACTCACCCTCGCTCTGCTGAGCTCCTCTTCCTTGTTGACGGAAGCCTTGAAGTTGGCTTTGTCGACACAAAGAACAACCTCTTTACTCAGACTCTTCAGGCAGGTGACCTGTTTGTTTTTCCCAAGGGACTTGTGCACTTCCAGTATAATGCTGACTCAGAAAACCCTGCTATAGCAATTTCTGCCTTTGGAAGTGCAAATGCAGGAACTGTGTCAATTCCTACCACTTTGTTTGCCACCAACATCGATGACAATGTCTTGGCTTTATCCTTCAAGACTGATGTAGCCACTATTCAAAAGCTCAAGGCCGGTCTTGCTCCGAAGCCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

208

Amino Acids

22.08

Weight (kDa)

5.01

Isoelectric Point (pI)

19.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	67 - 197	3.5e-32	Cupin
Cupin_2	PF07883	87 - 160	1.4e-12	Cupin domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	389
AccI	GTMKAC	1 cut(s)	360
AclWI	GGATC	1 cut(s)	77
AcsI	RAATTY	1 cut(s)	266
AcuI	CTGAAG	2 cut(s)	224, 377
AfaI	GTAC	1 cut(s)	201
AfiI	CCNNNNNNNGG	1 cut(s)	119
AgsI	TTSAA	6 cut(s)	9, 65, 266, 347, 571, 593
AjiI	CACGTC	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	197, 229
AluBI	AGCT	4 cut(s)	230, 275, 319, 598
AluI	AGCT	4 cut(s)	230, 275, 319, 598
Alw21I	GWGCWC	2 cut(s)	321, 435
Alw26I	GTCTC	1 cut(s)	171
Alw44I	GTGCAC	1 cut(s)	431
AlwI	GGATC	1 cut(s)	77
AlwNI	CAGNNNCTG	1 cut(s)	506
AoxI	GGCC	1 cut(s)	603
ApaLI	GTGCAC	1 cut(s)	431
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	2 cut(s)	293, 413
BaeGI	GKGCMC	2 cut(s)	186, 435
BanII	GRGCYC	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	321, 435
BccI	CCATC	1 cut(s)	125
BceAI	ACGGC	1 cut(s)	242
BcoDI	GTCTC	1 cut(s)	171
BfmI	CTRYAG	1 cut(s)	468
BfuAI	ACCTGC	1 cut(s)	389
BlpI	GCTNAGC	1 cut(s)	315
BmcAI	AGTACT	1 cut(s)	201
BmgBI	CACGTC	1 cut(s)	181
Bpu1102I	GCTNAGC	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	584
Bsa29I	ATCGAT	1 cut(s)	543
BsaJI	CCNNGG	2 cut(s)	213, 420
BsaXI	ACNNNNNCTCC	2 cut(s)	165, 195
Bsc4I	CCNNNNNNNGG	1 cut(s)	119
Bse118I	RCCGGY	2 cut(s)	152, 605
Bse1I	ACTGG	1 cut(s)	439
BseCI	ATCGAT	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	213, 420
BseLI	CCNNNNNNNGG	1 cut(s)	119
BseMII	CTCAG	4 cut(s)	210, 306, 398, 468
BseNI	ACTGG	1 cut(s)	439
BseRI	GAGGAG	2 cut(s)	189, 311
BseSI	GKGCMC	2 cut(s)	186, 435
BseYI	CCCAGC	2 cut(s)	226, 271
BshFI	GGCC	1 cut(s)	605
BshVI	ATCGAT	1 cut(s)	543
BsiHKAI	GWGCWC	2 cut(s)	321, 435
BsiSI	CCGG	2 cut(s)	153, 606
BslFI	GGGAC	1 cut(s)	438
BslI	CCNNNNNNNGG	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	171
BsmBI	CGTCTC	1 cut(s)	171
BsmFI	GGGAC	1 cut(s)	438
BsnI	GGCC	1 cut(s)	605
Bsp1286I	GDGCHC	3 cut(s)	186, 321, 435
Bsp143I	GATC	1 cut(s)	82
Bsp1720I	GCTNAGC	1 cut(s)	315
BspANI	GGCC	1 cut(s)	605
BspCNI	CTCAG	4 cut(s)	211, 307, 397, 467
BspDI	ATCGAT	1 cut(s)	543
BspMI	ACCTGC	1 cut(s)	389
BspPI	GGATC	1 cut(s)	77
BsrFI	RCCGGY	2 cut(s)	152, 605
BsrI	ACTGG	1 cut(s)	439
BssAI	RCCGGY	2 cut(s)	152, 605
BssECI	CCNNGG	2 cut(s)	213, 420
BssMI	GATC	1 cut(s)	82
BssT1I	CCWWGG	2 cut(s)	213, 420
Bst4CI	ACNGT	3 cut(s)	127, 199, 508
Bst6I	CTCTTC	2 cut(s)	329, 396
BstAPI	GCANNNNNTGC	1 cut(s)	479
BstC8I	GCNNGC	2 cut(s)	158, 277
BstDEI	CTNAG	5 cut(s)	95, 219, 315, 384, 454
BstEII	GGTNACC	1 cut(s)	401
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	85
BstMAI	GTCTC	1 cut(s)	171
BstMBI	GATC	1 cut(s)	82
BstMWI	GCNNNNNNNGC	3 cut(s)	215, 479, 611
BstNSI	RCATGY	1 cut(s)	160
BstPI	GGTNACC	1 cut(s)	401
BstSFI	CTRYAG	1 cut(s)	468
BstSLI	GKGCMC	2 cut(s)	186, 435
BstX2I	RGATCY	1 cut(s)	82
BstYI	RGATCY	1 cut(s)	82
Bsu15I	ATCGAT	1 cut(s)	543
BsuRI	GGCC	1 cut(s)	605
BsuTUI	ATCGAT	1 cut(s)	543
BtrI	CACGTC	1 cut(s)	181
BveI	ACCTGC	1 cut(s)	389
Cac8I	GCNNGC	2 cut(s)	158, 277
CaiI	CAGNNNCTG	1 cut(s)	506
CfoI	GCGC	1 cut(s)	112
Cfr10I	RCCGGY	2 cut(s)	152, 605
ClaI	ATCGAT	1 cut(s)	543
Csp6I	GTAC	1 cut(s)	200
CspCI	CAANNNNNGTGG	2 cut(s)	511, 546
CviAII	CATG	2 cut(s)	157, 624
CviQI	GTAC	1 cut(s)	200
DdeI	CTNAG	5 cut(s)	95, 219, 315, 384, 454
DpnI	GATC	1 cut(s)	84
DpnII	GATC	1 cut(s)	82
Eam1104I	CTCTTC	2 cut(s)	329, 396
EarI	CTCTTC	2 cut(s)	329, 396
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	2 cut(s)	213, 420
Eco24I	GRGCYC	1 cut(s)	321
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	2 cut(s)	224, 377
Eco91I	GGTNACC	1 cut(s)	401
EcoICRI	GAGCTC	1 cut(s)	319
EcoO65I	GGTNACC	1 cut(s)	401
EcoRI	GAATTC	1 cut(s)	266
EcoT14I	CCWWGG	2 cut(s)	213, 420
EcoT38I	GRGCYC	1 cut(s)	321
ErhI	CCWWGG	2 cut(s)	213, 420
Esp3I	CGTCTC	1 cut(s)	171
FaeI	CATG	2 cut(s)	160, 627
FaiI	YATR	7 cut(s)	148, 158, 253, 255, 444, 470, 625
FalI	AAGNNNNNCTT	2 cut(s)	197, 229
FaqI	GGGAC	1 cut(s)	438
FatI	CATG	2 cut(s)	156, 623
FauNDI	CATATG	1 cut(s)	253
FblI	GTMKAC	1 cut(s)	360
FriOI	GRGCYC	1 cut(s)	321
GlaI	GCGC	1 cut(s)	111
GsaI	CCCAGC	2 cut(s)	230, 275
HaeIII	GGCC	1 cut(s)	605
HapII	CCGG	2 cut(s)	153, 606
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	2 cut(s)	160, 627
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	2 cut(s)	334, 361
HindII	GTYRAC	2 cut(s)	334, 361
HinfI	GANTC	2 cut(s)	388, 452
HpaII	CCGG	2 cut(s)	153, 606
HphI	GGTGA	2 cut(s)	293, 413
Hpy166II	GTNNAC	3 cut(s)	334, 361, 433
Hpy188I	TCNGA	3 cut(s)	387, 457, 618
Hpy188III	TCNNGA	3 cut(s)	9, 86, 571
Hpy8I	GTNNAC	3 cut(s)	334, 361, 433
HpyAV	CCTTC	3 cut(s)	199, 202, 577
HpyCH4III	ACNGT	3 cut(s)	127, 199, 508
HpyCH4IV	ACGT	1 cut(s)	180
HpyCH4V	TGCA	4 cut(s)	50, 433, 494, 500
HpyF10VI	GCNNNNNNNGC	3 cut(s)	215, 479, 611
HpyF3I	CTNAG	5 cut(s)	95, 219, 315, 384, 454
HpySE526I	ACGT	1 cut(s)	180
Hsp92II	CATG	2 cut(s)	160, 627
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	82
LmnI	GCTCC	2 cut(s)	324, 619
MaeII	ACGT	1 cut(s)	180
MaeIII	GTNAC	2 cut(s)	98, 401
MalI	GATC	1 cut(s)	84
MboI	GATC	1 cut(s)	82
MboII	GAAGA	3 cut(s)	133, 316, 383
MflI	RGATCY	1 cut(s)	82
MhlI	GDGCHC	3 cut(s)	186, 321, 435
MluCI	AATT	4 cut(s)	42, 266, 474, 513
MlyI	GAGTC	2 cut(s)	382, 446
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	6 cut(s)	32, 123, 167, 315, 332, 386
MseI	TTAA	1 cut(s)	234
MslI	CAYNNNNRTG	1 cut(s)	155
MspA1I	CMGCKG	1 cut(s)	275
MspI	CCGG	2 cut(s)	153, 606
MwoI	GCNNNNNNNGC	3 cut(s)	215, 479, 611
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	82
NlaIII	CATG	2 cut(s)	160, 627
NmuCI	GTSAC	2 cut(s)	98, 401
NspI	RCATGY	1 cut(s)	160
PaeI	GCATGC	1 cut(s)	160
PaqCI	CACCTGC	1 cut(s)	389
PflFI	GACNNNGTC	1 cut(s)	551
PleI	GAGTC	2 cut(s)	382, 446
PpsI	GAGTC	2 cut(s)	382, 446
Psp124BI	GAGCTC	1 cut(s)	321
PspEI	GGTNACC	1 cut(s)	401
PspFI	CCCAGC	2 cut(s)	226, 271
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	82
PsyI	GACNNNGTC	1 cut(s)	551
PvuII	CAGCTG	1 cut(s)	275
RsaI	GTAC	1 cut(s)	201
RsaNI	GTAC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	155
SacI	GAGCTC	1 cut(s)	321
SalI	GTCGAC	1 cut(s)	359
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	1 cut(s)	82
ScaI	AGTACT	1 cut(s)	201
SchI	GAGTC	2 cut(s)	382, 446
SduI	GDGCHC	3 cut(s)	186, 321, 435
SfcI	CTRYAG	1 cut(s)	468
SmiMI	CAYNNNNRTG	1 cut(s)	155
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
SphI	GCATGC	1 cut(s)	160
Sse9I	AATT	4 cut(s)	42, 266, 474, 513
SstI	GAGCTC	1 cut(s)	321
StyI	CCWWGG	2 cut(s)	213, 420
TaaI	ACNGT	3 cut(s)	127, 199, 508
TaiI	ACGT	1 cut(s)	183
TaqI	TCGA	2 cut(s)	360, 543
TasI	AATT	4 cut(s)	42, 266, 474, 513
TatI	WGTACW	1 cut(s)	199
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TseFI	GTSAC	2 cut(s)	98, 401
Tsp45I	GTSAC	2 cut(s)	98, 401
TspDTI	ATGAA	1 cut(s)	240
TspGWI	ACGGA	1 cut(s)	351
Tth111I	GACNNNGTC	1 cut(s)	551
VneI	GTGCAC	1 cut(s)	431
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	160
XmiI	GTMKAC	1 cut(s)	360
ZrmI	AGTACT	1 cut(s)	201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.