Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000218.1

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Reverse (-)

113445 .. 118853

Gene Structure 5409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000218.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

atgattgattctctggagggaattatgaacagtgatgggttggatttagattattatgggtttagcagttggtgcaagtttgggtggtacgaagctgctgattttgggtgggggaagcctgcatgggtgagcagcattggttccagtagtgctcctcatttcatgaatctaatcattttggtggacacaaagtccggtgacggaattgaagcatgggtcaccttggatcagcaaaagtttctgcccaacctagaccaagcttccttagaccagacccttgacaatcttgtgataaaggtggtgcccatggaaaacctaaatggccgcagacttgttgaagcaggagacctctgcgagaggagaaatgggagaggagttgatcttaaccgtaattggagcgtagattggggcaaaaaagagaaggactatgatccgtatgaggaaaatcctgggactgctcctttcagtgagcctgaagctcaaataatgcggaaaattgcagtttcatttgatccgcacatatgggttaatatacactctgggatggaggctctatttatgccgtacgaccataagaacacaacccctgatggagttccctcacaaaagatgaagtcattgcttgaagaactgaaccatctgcattgccaaaaacgttgcatgattgggtctggtggaggttctgttggatatctggcacatgggacagcaactgattttatgtttgacattgtaaaggtgccgatggctttcacctttgagatatatggagatggagcagcctcatcaaaagattgctttaaaatgttcaatcccaccgacttcggtaccttcaatagggttctcaatgaatggtcagctgcatttttcacaatttttaaattggggccaaatctgctcggtgaaaattattcaaagccccccttagacaagtgggtgtccatagatgagtatcttgatgggtacttggttgagaggagtagtagatatggaaagaagatggaggtgcttgagctaggactgcaggagataagaacatatttcaggctcttcttgttatcctcagttctgttactgttcatgttctgttccagaatttcaaaaagcaagttttctagaccaattgtttctgctattgcactctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

381

Amino Acids

43.04

Weight (kDa)

5.21

Isoelectric Point (pI)

32.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	827
AccB1I	GGYRCC	3 cut(s)	301, 739, 827
AciI	CCGC	3 cut(s)	325, 490, 515
AclI	AACGTT	1 cut(s)	655
AclWI	GGATC	3 cut(s)	234, 425, 506
AcoI	YGGCCR	1 cut(s)	322
AcsI	RAATTY	1 cut(s)	1095
AcuI	CTGAAG	1 cut(s)	495
AfaI	GTAC	4 cut(s)	89, 566, 829, 965
AfiI	CCNNNNNNNGG	1 cut(s)	837
AgsI	TTSAA	7 cut(s)	209, 338, 626, 811, 835, 915, 1101
AhdI	GACNNNNNGTC	1 cut(s)	190
AjnI	CCWGG	1 cut(s)	448
AluBI	AGCT	5 cut(s)	95, 260, 479, 860, 1015
AluI	AGCT	5 cut(s)	95, 260, 479, 860, 1015
Alw21I	GWGCWC	1 cut(s)	154
Alw26I	GTCTC	1 cut(s)	339
AlwI	GGATC	3 cut(s)	234, 425, 506
AlwNI	CAGNNNCTG	1 cut(s)	713
AoxI	GGCC	2 cut(s)	322, 887
ApeKI	GCWGC	4 cut(s)	95, 132, 779, 860
ApoI	RAATTY	1 cut(s)	1095
Asp718I	GGTACC	1 cut(s)	827
AspS9I	GGNCC	1 cut(s)	887
AsuHPI	GGTGA	5 cut(s)	139, 209, 211, 745, 914
BaeGI	GKGCMC	1 cut(s)	306
BaeI	ACNNNNGTAYC	2 cut(s)	811, 844
BanI	GGYRCC	3 cut(s)	301, 739, 827
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	4 cut(s)	82, 144, 791, 847
BccI	CCATC	8 cut(s)	29, 538, 584, 645, 739, 767, 953, 994
BceAI	ACGGC	1 cut(s)	547
BciT130I	CCWGG	1 cut(s)	450
BcoDI	GTCTC	1 cut(s)	339
BfaI	CTAG	3 cut(s)	251, 1016, 1116
BfmI	CTRYAG	1 cut(s)	1022
BisI	GCNGC	5 cut(s)	96, 133, 325, 780, 861
BlsI	GCNGC	5 cut(s)	97, 134, 326, 781, 862
Bme1390I	CCNGG	1 cut(s)	450
BmeRI	GACNNNNNGTC	1 cut(s)	190
BmgT120I	GGNCC	1 cut(s)	887
BmiI	GGNNCC	5 cut(s)	142, 303, 741, 829, 888
BmrFI	CCNGG	1 cut(s)	450
BpmI	CTGGAG	1 cut(s)	35
BpuEI	CTTGAG	1 cut(s)	1031
BsaBI	GATNNNNATC	1 cut(s)	951
BsaI	GGTCTC	1 cut(s)	339
BsaJI	CCNNGG	3 cut(s)	222, 306, 449
BsaWI	WCCGGW	1 cut(s)	194
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	837
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	2 cut(s)	617, 643
Bse8I	GATNNNNATC	1 cut(s)	951
BseBI	CCWGG	1 cut(s)	450
BseDI	CCNNGG	3 cut(s)	222, 306, 449
BseGI	GGATG	1 cut(s)	549
BseJI	GATNNNNATC	1 cut(s)	951
BseLI	CCNNNNNNNGG	1 cut(s)	837
BseMI	GCAATG	2 cut(s)	617, 643
BseMII	CTCAG	1 cut(s)	1077
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	4 cut(s)	144, 373, 387, 991
BseSI	GKGCMC	1 cut(s)	306
BseXI	GCAGC	4 cut(s)	82, 144, 791, 847
BshFI	GGCC	2 cut(s)	324, 889
BshNI	GGYRCC	3 cut(s)	301, 739, 827
BsiHKAI	GWGCWC	1 cut(s)	154
BsiSI	CCGG	1 cut(s)	195
BsiWI	CGTACG	1 cut(s)	564
BslFI	GGGAC	2 cut(s)	466, 718
BslI	CCNNNNNNNGG	1 cut(s)	837
BsmAI	GTCTC	1 cut(s)	339
BsmFI	GGGAC	2 cut(s)	466, 718
BsnI	GGCC	2 cut(s)	324, 889
Bso31I	GGTCTC	1 cut(s)	339
Bsp1286I	GDGCHC	2 cut(s)	154, 306
Bsp143I	GATC	4 cut(s)	226, 379, 430, 511
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	3 cut(s)	325, 490, 515
BspANI	GGCC	2 cut(s)	324, 889
BspCNI	CTCAG	1 cut(s)	1076
BspHI	TCATGA	1 cut(s)	162
BspLI	GGNNCC	5 cut(s)	142, 303, 741, 829, 888
BspMAI	CTGCAG	1 cut(s)	1026
BspPI	GGATC	3 cut(s)	234, 425, 506
BspQI	GCTCTTC	1 cut(s)	1055
BspT107I	GGYRCC	3 cut(s)	301, 739, 827
BspTNI	GGTCTC	1 cut(s)	339
BsrDI	GCAATG	2 cut(s)	617, 643
BsrI	ACTGG	1 cut(s)	144
BssECI	CCNNGG	3 cut(s)	222, 306, 449
BssMI	GATC	4 cut(s)	226, 379, 430, 511
BssT1I	CCWWGG	2 cut(s)	222, 306
Bst2UI	CCWGG	1 cut(s)	450
Bst4CI	ACNGT	3 cut(s)	32, 389, 1077
Bst6I	CTCTTC	1 cut(s)	1055
BstAPI	GCANNNNNTGC	1 cut(s)	72
BstC8I	GCNNGC	1 cut(s)	120
BstDEI	CTNAG	3 cut(s)	265, 925, 1063
BstDSI	CCRYGG	1 cut(s)	306
BstEII	GGTNACC	1 cut(s)	217
BstENI	CCTNNNNNAGG	1 cut(s)	835
BstF5I	GGATG	1 cut(s)	549
BstKTI	GATC	4 cut(s)	229, 382, 433, 514
BstMAI	GTCTC	1 cut(s)	339
BstMBI	GATC	4 cut(s)	226, 379, 430, 511
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 895, 1021
BstNI	CCWGG	1 cut(s)	450
BstPI	GGTNACC	1 cut(s)	217
BstSCI	CCNGG	1 cut(s)	448
BstSFI	CTRYAG	1 cut(s)	1022
BstSLI	GKGCMC	1 cut(s)	306
BstV1I	GCAGC	4 cut(s)	82, 144, 791, 847
BsuRI	GGCC	2 cut(s)	324, 889
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	1 cut(s)	549
BtsIMutI	CAGTG	2 cut(s)	37, 472
Cac8I	GCNNGC	1 cut(s)	120
CaiI	CAGNNNCTG	1 cut(s)	713
CciI	TCATGA	1 cut(s)	162
Cfr13I	GGNCC	1 cut(s)	887
Csp6I	GTAC	4 cut(s)	88, 565, 828, 964
CviAII	CATG	7 cut(s)	123, 163, 213, 307, 661, 701, 1081
CviQI	GTAC	4 cut(s)	88, 565, 828, 964
DdeI	CTNAG	3 cut(s)	265, 925, 1063
DpnI	GATC	4 cut(s)	228, 381, 432, 513
DpnII	GATC	4 cut(s)	226, 379, 430, 511
DraI	TTTAAA	2 cut(s)	802, 880
DriI	GACNNNNNGTC	1 cut(s)	190
EaeI	YGGCCR	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	1055
Eam1105I	GACNNNNNGTC	1 cut(s)	190
EarI	CTCTTC	1 cut(s)	1055
Eco130I	CCWWGG	2 cut(s)	222, 306
Eco31I	GGTCTC	1 cut(s)	339
Eco32I	GATATC	1 cut(s)	692
Eco57I	CTGAAG	1 cut(s)	495
Eco91I	GGTNACC	1 cut(s)	217
EcoNI	CCTNNNNNAGG	1 cut(s)	835
EcoO65I	GGTNACC	1 cut(s)	217
EcoRII	CCWGG	1 cut(s)	448
EcoRV	GATATC	1 cut(s)	692
EcoT14I	CCWWGG	2 cut(s)	222, 306
ErhI	CCWWGG	2 cut(s)	222, 306
FaeI	CATG	7 cut(s)	126, 166, 216, 310, 664, 704, 1084
FalI	AAGNNNNNCTT	2 cut(s)	908, 940
FaqI	GGGAC	2 cut(s)	466, 718
FatI	CATG	7 cut(s)	122, 162, 212, 306, 660, 700, 1080
FauNDI	CATATG	1 cut(s)	521
Fnu4HI	GCNGC	5 cut(s)	96, 133, 325, 780, 861
FokI	GGATG	1 cut(s)	556
Fsp4HI	GCNGC	5 cut(s)	96, 133, 325, 780, 861
FspBI	CTAG	3 cut(s)	251, 1016, 1116
GluI	GCNGC	5 cut(s)	96, 133, 325, 780, 861
GsuI	CTGGAG	1 cut(s)	35
HaeIII	GGCC	2 cut(s)	324, 889
HapII	CCGG	1 cut(s)	195
Hin1II	CATG	7 cut(s)	126, 166, 216, 310, 664, 704, 1084
HindIII	AAGCTT	1 cut(s)	258
HinfI	GANTC	2 cut(s)	8, 166
HpaII	CCGG	1 cut(s)	195
HphI	GGTGA	5 cut(s)	139, 209, 211, 745, 914
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	1 cut(s)	1145
Hpy188III	TCNNGA	5 cut(s)	14, 163, 956, 1092, 1116
Hpy8I	GTNNAC	1 cut(s)	184
HpyAV	CCTTC	2 cut(s)	415, 841
HpyCH4III	ACNGT	3 cut(s)	32, 389, 1077
HpyCH4IV	ACGT	1 cut(s)	655
HpyCH4V	TGCA	8 cut(s)	75, 122, 500, 643, 660, 863, 1024, 1139
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 895, 1021
HpyF3I	CTNAG	3 cut(s)	265, 925, 1063
HpySE526I	ACGT	1 cut(s)	655
Hsp92II	CATG	7 cut(s)	126, 166, 216, 310, 664, 704, 1084
KpnI	GGTACC	1 cut(s)	831
Kzo9I	GATC	4 cut(s)	226, 379, 430, 511
LguI	GCTCTTC	1 cut(s)	1055
LmnI	GCTCC	4 cut(s)	157, 396, 463, 776
Lsp1109I	GCAGC	4 cut(s)	82, 144, 791, 847
MaeI	CTAG	3 cut(s)	251, 1016, 1116
MaeII	ACGT	1 cut(s)	655
MaeIII	GTNAC	3 cut(s)	197, 217, 1071
MalI	GATC	4 cut(s)	228, 381, 432, 513
MboI	GATC	4 cut(s)	226, 379, 430, 511
MboII	GAAGA	3 cut(s)	638, 1009, 1042
MfeI	CAATTG	1 cut(s)	1122
MhlI	GDGCHC	2 cut(s)	154, 306
MluCI	AATT	9 cut(s)	21, 204, 391, 495, 873, 881, 907, 1095, 1122
MmeI	TCCRAC	2 cut(s)	21, 667
MseI	TTAA	4 cut(s)	384, 528, 801, 879
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	860
MspI	CCGG	1 cut(s)	195
MspR9I	CCNGG	1 cut(s)	450
MunI	CAATTG	1 cut(s)	1122
MvaI	CCWGG	1 cut(s)	450
MwoI	GCNNNNNNNGC	3 cut(s)	72, 895, 1021
NcoI	CCATGG	1 cut(s)	306
NdeI	CATATG	1 cut(s)	521
NdeII	GATC	4 cut(s)	226, 379, 430, 511
NlaIII	CATG	7 cut(s)	126, 166, 216, 310, 664, 704, 1084
NlaIV	GGNNCC	5 cut(s)	142, 303, 741, 829, 888
NmuCI	GTSAC	2 cut(s)	197, 217
PagI	TCATGA	1 cut(s)	162
PciSI	GCTCTTC	1 cut(s)	1055
PfeI	GAWTC	2 cut(s)	8, 166
Pfl23II	CGTACG	1 cut(s)	564
PkrI	GCNGC	5 cut(s)	97, 134, 326, 781, 862
Psp1406I	AACGTT	1 cut(s)	655
Psp6I	CCWGG	1 cut(s)	448
PspEI	GGTNACC	1 cut(s)	217
PspGI	CCWGG	1 cut(s)	448
PspLI	CGTACG	1 cut(s)	564
PspN4I	GGNNCC	5 cut(s)	142, 303, 741, 829, 888
PspPI	GGNCC	1 cut(s)	887
PstI	CTGCAG	1 cut(s)	1026
PstNI	CAGNNNCTG	1 cut(s)	713
PvuII	CAGCTG	1 cut(s)	860
RsaI	GTAC	4 cut(s)	89, 566, 829, 965
RsaNI	GTAC	4 cut(s)	88, 565, 828, 964
RseI	CAYNNNNRTG	1 cut(s)	179
SapI	GCTCTTC	1 cut(s)	1055
SaqAI	TTAA	4 cut(s)	384, 528, 801, 879
SatI	GCNGC	5 cut(s)	96, 133, 325, 780, 861
Sau3AI	GATC	4 cut(s)	226, 379, 430, 511
Sau96I	GGNCC	1 cut(s)	887
ScrFI	CCNGG	1 cut(s)	450
SduI	GDGCHC	2 cut(s)	154, 306
SfcI	CTRYAG	1 cut(s)	1022
SmiMI	CAYNNNNRTG	1 cut(s)	179
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
Sse9I	AATT	9 cut(s)	21, 204, 391, 495, 873, 881, 907, 1095, 1122
SsiI	CCGC	3 cut(s)	325, 490, 515
SspMI	CTAG	3 cut(s)	251, 1016, 1116
StyD4I	CCNGG	1 cut(s)	448
StyI	CCWWGG	2 cut(s)	222, 306
TaaI	ACNGT	3 cut(s)	32, 389, 1077
TaiI	ACGT	1 cut(s)	658
TasI	AATT	9 cut(s)	21, 204, 391, 495, 873, 881, 907, 1095, 1122
TauI	GCSGC	1 cut(s)	327
TfiI	GAWTC	2 cut(s)	8, 166
Tru1I	TTAA	4 cut(s)	384, 528, 801, 879
Tru9I	TTAA	4 cut(s)	384, 528, 801, 879
TscAI	CASTG	2 cut(s)	37, 472
TseFI	GTSAC	2 cut(s)	197, 217
TseI	GCWGC	4 cut(s)	95, 132, 779, 860
Tsp45I	GTSAC	2 cut(s)	197, 217
TspDTI	ATGAA	7 cut(s)	41, 151, 179, 495, 626, 864, 1069
TspGWI	ACGGA	2 cut(s)	216, 423
TspRI	CASTG	2 cut(s)	37, 472
XagI	CCTNNNNNAGG	1 cut(s)	835
XapI	RAATTY	1 cut(s)	1095
XbaI	TCTAGA	1 cut(s)	1115
XspI	CTAG	3 cut(s)	251, 1016, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.