Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Forward (+)

32916820 .. 32923245

Gene Structure 6426 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G354500.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1311 bp

ATGGCTCATCTCCTTCTCCTCTCCTCTCCCTTATCCATCAGTTTGTGTTTCTTTGCTTGGTTGCAAGGTTTCGTGGTCGTTCATGGCAATACTAATCTCACCCGCTCTTCTTTCACGCCCATTAATCGTAATCTCTACCATTCCAGTGGGGATTTGATGGAAGAAATAAAAGCTTTGGTCTTTCGTCACCCAGACCGGCTCACTTTCGATACAATTAAATCTCGAAACAAGGGCTACTCTGCTGAGATCGCAGTAGTTACCTATTGCCGGAGAAGGCAAGAGACTGATGACAGGCCAAAGTTTCGGATCCTTCTTAGTTTTGGACAGCATGGAAGGGAGCTCATTACATCTGAGCTTGCTTTGCGAATCCTTTCAATCTTGAGTAAAGAACAGTTTCTACCCAACCTGGACCCAGCCTCCTTAGACCATACCCTTGACAAACTCTTAATAAAGATGGTTCCTATGGAAAACATAAATGGCCGCAGAATTGTTGAAGCAGGAGATCTCTGTGAGAGGAGAAATGGGAGAGGAGTTGATCTCAACCGTAATTGGAGCGTAGATTGGGGCAAAAAGGAGAAGGATTATGATCCATATGAGGAAAATCCTGGAACTGCTCCTTTCAGCGAACCTGAAACTCAGATAATGCGGAAAGTTGCCATGTCATTTGATCCACACATATGGGTTAATATACACTCTGGAATGGAGGCTCTATTTATGCCATATGACCATAAGAACACAACCCCTGATGGAGTTTCCTCGCACCAGATGAAGTCATTGCTTGAGGAACTCAACCATCTGCATTGCCAAAGGCGTTGCATGATTGGGTCTGGTGGAGGTTCTGTTGGGTATCTGGCACACGGGACAGCAACTGATTATATGTTTGATATTGTAAGGGTGCCAATGGCTTTCACCTTTGAGATATATGGAGATGGAGCAGCATCATCAAGAGATTGCTTCAAAATGTTCAATCCCACCGACTTTGGTACCTTCAATAGAGTTCTCAATGAATGGTCTGCAGCTTTTTTCACAATTTTTAAATTGGGGCCAAACCAGCTTGGTGAAAATTATTCCAAGACTTCTGTGCCCACCTTAGACAAGTGGGTATCCATAGATGAGTATCTTGACGGGTACTTAGTTGAGAGGAGTAGCAGATATGGAAAGAAGATGGAGGTGCTTGAATTAGGAATGCAGGAGATAAGAACATATTTCAGGCTCTTCTTGTTATCTTCCGTCCTGTTATTGTTCATGTTCTGTTCCAGAATTTCAAAAGGCAAGTGTGCTAGACCAATTGTTTCTGCTATTGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

437

Amino Acids

49.75

Weight (kDa)

7.64

Isoelectric Point (pI)

40.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	983
AccB1I	GGYRCC	2 cut(s)	895, 983
AccBSI	CCGCTC	1 cut(s)	105
AciI	CCGC	3 cut(s)	103, 481, 646
AclWI	GGATC	4 cut(s)	301, 314, 581, 662
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	1260
AfaI	GTAC	2 cut(s)	985, 1130
AfiI	CCNNNNNNNGG	1 cut(s)	267
AgsI	TTSAA	7 cut(s)	375, 494, 958, 967, 991, 1178, 1266
AjnI	CCWGG	2 cut(s)	405, 604
AluBI	AGCT	5 cut(s)	173, 340, 355, 1019, 1054
AluI	AGCT	5 cut(s)	173, 340, 355, 1019, 1054
Alw21I	GWGCWC	1 cut(s)	342
Alw26I	GTCTC	1 cut(s)	275
AlwI	GGATC	4 cut(s)	301, 314, 581, 662
AlwNI	CAGNNNCTG	1 cut(s)	869
AoxI	GGCC	3 cut(s)	293, 478, 1043
ApeKI	GCWGC	2 cut(s)	935, 1016
ApoI	RAATTY	1 cut(s)	1260
AseI	ATTAAT	1 cut(s)	123
Asp700I	GAANNNNTTC	2 cut(s)	370, 393
Asp718I	GGTACC	1 cut(s)	983
AspS9I	GGNCC	2 cut(s)	409, 1043
AsuHPI	GGTGA	4 cut(s)	91, 179, 901, 1070
AvaII	GGWCC	1 cut(s)	409
BaeGI	GKGCMC	1 cut(s)	1086
BaeI	ACNNNNGTAYC	2 cut(s)	967, 1000
BamHI	GGATCC	1 cut(s)	306
BanI	GGYRCC	2 cut(s)	895, 983
BanII	GRGCYC	1 cut(s)	342
Bbv12I	GWGCWC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	947, 1028
BccI	CCATC	7 cut(s)	44, 151, 448, 740, 801, 923, 1159
BciT130I	CCWGG	2 cut(s)	407, 606
BciVI	GTATCC	1 cut(s)	1114
BcoDI	GTCTC	1 cut(s)	275
BfaI	CTAG	1 cut(s)	1281
BfmI	CTRYAG	1 cut(s)	1014
BfuI	GTATCC	1 cut(s)	1114
BglII	AGATCT	1 cut(s)	502
BisI	GCNGC	3 cut(s)	481, 936, 1017
BlsI	GCNGC	3 cut(s)	482, 937, 1018
Bme1390I	CCNGG	2 cut(s)	407, 606
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	409, 1043
BmiI	GGNNCC	6 cut(s)	308, 411, 459, 897, 985, 1044
BmrFI	CCNGG	2 cut(s)	407, 606
BmsI	GCATC	1 cut(s)	947
BplI	GAGNNNNNCTC	2 cut(s)	522, 554
BpuEI	CTTGAG	2 cut(s)	400, 800
BsaBI	GATNNNNATC	2 cut(s)	585, 1116
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 825, 855
Bsc4I	CCNNNNNNNGG	1 cut(s)	267
Bse118I	RCCGGY	1 cut(s)	195
Bse1I	ACTGG	1 cut(s)	144
Bse3DI	GCAATG	2 cut(s)	773, 799
Bse8I	GATNNNNATC	2 cut(s)	585, 1116
BseBI	CCWGG	2 cut(s)	407, 606
BseJI	GATNNNNATC	2 cut(s)	585, 1116
BseLI	CCNNNNNNNGG	1 cut(s)	267
BseMI	GCAATG	2 cut(s)	773, 799
BseMII	CTCAG	3 cut(s)	234, 342, 650
BseNI	ACTGG	1 cut(s)	144
BseRI	GAGGAG	5 cut(s)	8, 13, 529, 543, 1156
BseSI	GKGCMC	1 cut(s)	1086
BseXI	GCAGC	2 cut(s)	947, 1028
BseYI	CCCAGC	1 cut(s)	412
BshFI	GGCC	3 cut(s)	295, 480, 1045
BshNI	GGYRCC	2 cut(s)	895, 983
BsiHKAI	GWGCWC	1 cut(s)	342
BsiSI	CCGG	2 cut(s)	196, 268
BslFI	GGGAC	1 cut(s)	874
BslI	CCNNNNNNNGG	1 cut(s)	267
BsmAI	GTCTC	1 cut(s)	275
BsmFI	GGGAC	1 cut(s)	874
BsmI	GAATGC	1 cut(s)	1191
BsnI	GGCC	3 cut(s)	295, 480, 1045
Bsp1286I	GDGCHC	2 cut(s)	342, 1086
Bsp143I	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
BspACI	CCGC	3 cut(s)	103, 481, 646
BspANI	GGCC	3 cut(s)	295, 480, 1045
BspCNI	CTCAG	3 cut(s)	235, 343, 649
BspLI	GGNNCC	6 cut(s)	308, 411, 459, 897, 985, 1044
BspMAI	CTGCAG	1 cut(s)	1018
BspPI	GGATC	4 cut(s)	301, 314, 581, 662
BspQI	GCTCTTC	2 cut(s)	112, 1220
BspT107I	GGYRCC	2 cut(s)	895, 983
BsrBI	CCGCTC	1 cut(s)	105
BsrDI	GCAATG	2 cut(s)	773, 799
BsrFI	RCCGGY	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	144
BssAI	RCCGGY	1 cut(s)	195
BssMI	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
Bst2UI	CCWGG	2 cut(s)	407, 606
Bst4CI	ACNGT	2 cut(s)	393, 545
Bst6I	CTCTTC	2 cut(s)	112, 1220
BstC8I	GCNNGC	1 cut(s)	357
BstDEI	CTNAG	7 cut(s)	243, 314, 351, 421, 636, 1090, 1132
BstKTI	GATC	6 cut(s)	249, 309, 505, 538, 589, 670
BstMAI	GTCTC	1 cut(s)	275
BstMBI	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
BstMWI	GCNNNNNNNGC	3 cut(s)	248, 361, 1051
BstNI	CCWGG	2 cut(s)	407, 606
BstSCI	CCNGG	2 cut(s)	405, 604
BstSFI	CTRYAG	1 cut(s)	1014
BstSLI	GKGCMC	1 cut(s)	1086
BstV1I	GCAGC	2 cut(s)	947, 1028
BstX2I	RGATCY	2 cut(s)	306, 502
BstXI	CCANNNNNNTGG	2 cut(s)	146, 678
BstYI	RGATCY	2 cut(s)	306, 502
BsuI	GTATCC	1 cut(s)	1114
BsuRI	GGCC	3 cut(s)	295, 480, 1045
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	357
CaiI	CAGNNNCTG	1 cut(s)	869
Cfr10I	RCCGGY	1 cut(s)	195
Cfr13I	GGNCC	2 cut(s)	409, 1043
Csp6I	GTAC	2 cut(s)	984, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviAII	CATG	5 cut(s)	83, 329, 658, 817, 1246
CviQI	GTAC	2 cut(s)	984, 1129
DdeI	CTNAG	7 cut(s)	243, 314, 351, 421, 636, 1090, 1132
DpnI	GATC	6 cut(s)	248, 308, 504, 537, 588, 669
DpnII	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
DraI	TTTAAA	1 cut(s)	1036
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	112, 1220
EarI	CTCTTC	2 cut(s)	112, 1220
Ecl136II	GAGCTC	1 cut(s)	340
Eco24I	GRGCYC	1 cut(s)	342
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	340
EcoICRI	GAGCTC	1 cut(s)	340
EcoRII	CCWGG	2 cut(s)	405, 604
EcoT38I	GRGCYC	1 cut(s)	342
FaeI	CATG	5 cut(s)	86, 332, 661, 820, 1249
FaqI	GGGAC	1 cut(s)	874
FatI	CATG	5 cut(s)	82, 328, 657, 816, 1245
FauI	CCCGC	1 cut(s)	110
FauNDI	CATATG	3 cut(s)	592, 677, 721
Fnu4HI	GCNGC	3 cut(s)	481, 936, 1017
FriOI	GRGCYC	1 cut(s)	342
Fsp4HI	GCNGC	3 cut(s)	481, 936, 1017
FspBI	CTAG	1 cut(s)	1281
GluI	GCNGC	3 cut(s)	481, 936, 1017
GsaI	CCCAGC	1 cut(s)	416
HaeIII	GGCC	3 cut(s)	295, 480, 1045
HapII	CCGG	2 cut(s)	196, 268
Hin1II	CATG	5 cut(s)	86, 332, 661, 820, 1249
HindIII	AAGCTT	1 cut(s)	171
HinfI	GANTC	1 cut(s)	366
HpaII	CCGG	2 cut(s)	196, 268
HphI	GGTGA	4 cut(s)	91, 179, 901, 1070
Hpy188I	TCNGA	4 cut(s)	306, 352, 639, 1310
Hpy188III	TCNNGA	6 cut(s)	222, 379, 696, 945, 1121, 1257
HpyAV	CCTTC	6 cut(s)	23, 267, 320, 327, 571, 997
HpyCH4III	ACNGT	2 cut(s)	393, 545
HpyCH4V	TGCA	6 cut(s)	64, 799, 816, 1016, 1189, 1304
HpyF10VI	GCNNNNNNNGC	3 cut(s)	248, 361, 1051
HpyF3I	CTNAG	7 cut(s)	243, 314, 351, 421, 636, 1090, 1132
Hsp92II	CATG	5 cut(s)	86, 332, 661, 820, 1249
KpnI	GGTACC	1 cut(s)	987
Kzo9I	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
LguI	GCTCTTC	2 cut(s)	112, 1220
LmnI	GCTCC	4 cut(s)	337, 552, 619, 932
Lsp1109I	GCAGC	2 cut(s)	947, 1028
LweI	GCATC	1 cut(s)	947
MaeI	CTAG	1 cut(s)	1281
MaeIII	GTNAC	2 cut(s)	185, 256
MalI	GATC	6 cut(s)	248, 308, 504, 537, 588, 669
MbiI	CCGCTC	1 cut(s)	105
MboI	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
MboII	GAAGA	5 cut(s)	99, 173, 1174, 1207, 1218
MfeI	CAATTG	1 cut(s)	1287
MflI	RGATCY	2 cut(s)	306, 502
MhlI	GDGCHC	2 cut(s)	342, 1086
MluCI	AATT	9 cut(s)	213, 486, 547, 1029, 1037, 1063, 1178, 1260, 1287
MroXI	GAANNNNTTC	2 cut(s)	370, 393
MseI	TTAA	5 cut(s)	123, 216, 446, 684, 1035
MslI	CAYNNNNRTG	2 cut(s)	144, 676
MspI	CCGG	2 cut(s)	196, 268
MspR9I	CCNGG	2 cut(s)	407, 606
MunI	CAATTG	1 cut(s)	1287
Mva1269I	GAATGC	1 cut(s)	1191
MvaI	CCWGG	2 cut(s)	407, 606
MwoI	GCNNNNNNNGC	3 cut(s)	248, 361, 1051
NdeI	CATATG	3 cut(s)	592, 677, 721
NdeII	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
NlaIII	CATG	5 cut(s)	86, 332, 661, 820, 1249
NlaIV	GGNNCC	6 cut(s)	308, 411, 459, 897, 985, 1044
NmuCI	GTSAC	1 cut(s)	185
PciSI	GCTCTTC	2 cut(s)	112, 1220
PctI	GAATGC	1 cut(s)	1191
PdmI	GAANNNNTTC	2 cut(s)	370, 393
PfeI	GAWTC	1 cut(s)	366
PfoI	TCCNGGA	1 cut(s)	604
PkrI	GCNGC	3 cut(s)	482, 937, 1018
PshBI	ATTAAT	1 cut(s)	123
Psp124BI	GAGCTC	1 cut(s)	342
Psp6I	CCWGG	2 cut(s)	405, 604
PspFI	CCCAGC	1 cut(s)	412
PspGI	CCWGG	2 cut(s)	405, 604
PspN4I	GGNNCC	6 cut(s)	308, 411, 459, 897, 985, 1044
PspPI	GGNCC	2 cut(s)	409, 1043
PsrI	GAACNNNNNNTAC	2 cut(s)	381, 413
PstI	CTGCAG	1 cut(s)	1018
PstNI	CAGNNNCTG	1 cut(s)	869
PsuI	RGATCY	2 cut(s)	306, 502
RsaI	GTAC	2 cut(s)	985, 1130
RsaNI	GTAC	2 cut(s)	984, 1129
RseI	CAYNNNNRTG	2 cut(s)	144, 676
SacI	GAGCTC	1 cut(s)	342
SapI	GCTCTTC	2 cut(s)	112, 1220
SaqAI	TTAA	5 cut(s)	123, 216, 446, 684, 1035
SatI	GCNGC	3 cut(s)	481, 936, 1017
Sau3AI	GATC	6 cut(s)	246, 306, 502, 535, 586, 667
Sau96I	GGNCC	2 cut(s)	409, 1043
ScrFI	CCNGG	2 cut(s)	407, 606
SduI	GDGCHC	2 cut(s)	342, 1086
SfaNI	GCATC	1 cut(s)	947
SfcI	CTRYAG	1 cut(s)	1014
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	2 cut(s)	144, 676
SmlI	CTYRAG	2 cut(s)	379, 779
SmoI	CTYRAG	2 cut(s)	379, 779
Sse9I	AATT	9 cut(s)	213, 486, 547, 1029, 1037, 1063, 1178, 1260, 1287
SsiI	CCGC	3 cut(s)	103, 481, 646
SspMI	CTAG	1 cut(s)	1281
SstI	GAGCTC	1 cut(s)	342
StyD4I	CCNGG	2 cut(s)	405, 604
TaaI	ACNGT	2 cut(s)	393, 545
TaqI	TCGA	2 cut(s)	207, 223
TasI	AATT	9 cut(s)	213, 486, 547, 1029, 1037, 1063, 1178, 1260, 1287
TauI	GCSGC	1 cut(s)	483
TfiI	GAWTC	1 cut(s)	366
Tru1I	TTAA	5 cut(s)	123, 216, 446, 684, 1035
Tru9I	TTAA	5 cut(s)	123, 216, 446, 684, 1035
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	2 cut(s)	935, 1016
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	4 cut(s)	71, 782, 1020, 1234
TspGWI	ACGGA	1 cut(s)	1219
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	409
VspI	ATTAAT	1 cut(s)	123
XapI	RAATTY	1 cut(s)	1260
XmnI	GAANNNNTTC	2 cut(s)	370, 393
XspI	CTAG	1 cut(s)	1281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.