Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Forward (+)

6029773 .. 6033351

Gene Structure 3579 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00163890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1008 bp

ATGGCTCATCAGCTTCCTCTATGGTCTCCCTTGTGCATCAGTTTGTGCTTCTTTGCTTGGTTGCAAGGTTTCTTCTCCGTCGTCCATGGCGATACTAATCTCTCTTACCCTTCTCTCACCCCCATTGACCGCGATCTCTACCATTCTAGTGGGGATTTGATGGAAGAAATTAAAGCTTTGGTCCTTCGACACAAAGATAAACTCACTTTGGATACAATTAAGGCTCAAAACAAGGGTTACTCTGCTGAGATTGCTGTAGTTACTTATAGTCGGAGGAGGCAGGAGGCCGATGACAAGCCAAGGTTTCGGATCCTTCTTAGTTTCGGGCAGCATGGAAGGGAGCTCATTACATCTGAAGTCGCTTTGCGAATCCTTTCAATCTTGTGTATAGAAAAGTTTCTGCCCAACCTAGACCAAGCTTCCTTAGACCAGACCCTTGACAATCTTGTGATAAAGGACTATGATCCGTATGAGGAAAATCCTGGGACTGCTCCTTTCAGTGAGCCTGAAGCTCAAATAATGCGGAAAATTGCAGTGTCATTTGATCCACACGTATGGGTTAATATACACTCTGGGATGGAGGCTCTATTTATGCCATACGACCATAAGAACACAACCCCTGATGGAGTTCCCTCACAAAAGATGAAGTCATTGCTTGAAGAACTGAACCATCTGCATTGCCAAAAACGTTGCATGATTGGGTCTGGTGGAGGTTCTGTAGGATATCTGGCACATGGGACAGCAACTGATTTTATGTTTGACATTATAAAGGTGCCGATGGCTTTCACCTTTGAGTGGGTGTCCATAGATGAGTATCTTGATGGGTACTTGGTCGAGAGGAGTAGTAGATATGGAAAGAAGATGGAGGTGCTTGAGCTAGGACTGCAGGAGATAAGAACATATTTCAGGCTCTTCTTGTTATCCTCAGTTCTGTTACTGTTCATGTTCTGTTCCAGAATTTCAAAAAGCAAGTTTTCTAGACCAATTGTTTCTGCTATTGCACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

335

Amino Acids

38.17

Weight (kDa)

6.13

Isoelectric Point (pI)

44.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M14	PF00246	158 - 268	4.3e-08	Zinc carboxypeptidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	767
AccB1I	GGYRCC	1 cut(s)	772
AccII	CGCG	1 cut(s)	132
AciI	CCGC	2 cut(s)	130, 523
AclI	AACGTT	1 cut(s)	688
AclWI	GGATC	4 cut(s)	304, 317, 458, 539
AcsI	RAATTY	1 cut(s)	957
AcuI	CTGAAG	2 cut(s)	375, 528
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	1 cut(s)	795
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	3 cut(s)	378, 659, 963
AjnI	CCWGG	1 cut(s)	481
AluBI	AGCT	6 cut(s)	13, 176, 343, 419, 512, 877
AluI	AGCT	6 cut(s)	13, 176, 343, 419, 512, 877
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	30
AlwI	GGATC	4 cut(s)	304, 317, 458, 539
AlwNI	CAGNNNCTG	1 cut(s)	746
AoxI	GGCC	1 cut(s)	285
ApeKI	GCWGC	1 cut(s)	328
ApoI	RAATTY	1 cut(s)	957
Asp700I	GAANNNNTTC	2 cut(s)	373, 396
AspS9I	GGNCC	1 cut(s)	181
AsuHPI	GGTGA	2 cut(s)	109, 778
AvaII	GGWCC	1 cut(s)	181
BamHI	GGATCC	1 cut(s)	309
BanI	GGYRCC	1 cut(s)	772
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BbvI	GCAGC	1 cut(s)	340
BccI	CCATC	7 cut(s)	154, 571, 617, 678, 772, 815, 856
BciT130I	CCWGG	1 cut(s)	483
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	1 cut(s)	30
BfaI	CTAG	4 cut(s)	147, 410, 878, 978
BfmI	CTRYAG	3 cut(s)	255, 717, 884
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	329
BlsI	GCNGC	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	483
Bme18I	GGWCC	1 cut(s)	181
BmgT120I	GGNCC	1 cut(s)	181
BmiI	GGNNCC	2 cut(s)	311, 774
BmrFI	CCNGG	1 cut(s)	483
BmsI	GCATC	1 cut(s)	45
BpuEI	CTTGAG	1 cut(s)	893
BsaAI	YACGTR	1 cut(s)	553
BsaBI	GATNNNNATC	2 cut(s)	96, 813
BsaI	GGTCTC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	85, 299, 482
BsaXI	ACNNNNNCTCC	2 cut(s)	702, 732
Bsc4I	CCNNNNNNNGG	1 cut(s)	795
Bse3DI	GCAATG	2 cut(s)	650, 676
Bse8I	GATNNNNATC	2 cut(s)	96, 813
BseBI	CCWGG	1 cut(s)	483
BseDI	CCNNGG	3 cut(s)	85, 299, 482
BseGI	GGATG	1 cut(s)	582
BseJI	GATNNNNATC	2 cut(s)	96, 813
BseLI	CCNNNNNNNGG	1 cut(s)	795
BseMI	GCAATG	2 cut(s)	650, 676
BseMII	CTCAG	2 cut(s)	237, 939
BseRI	GAGGAG	2 cut(s)	289, 853
BseXI	GCAGC	1 cut(s)	340
Bsh1236I	CGCG	1 cut(s)	132
BshFI	GGCC	1 cut(s)	287
BshNI	GGYRCC	1 cut(s)	772
BsiHKAI	GWGCWC	1 cut(s)	345
BslFI	GGGAC	2 cut(s)	499, 751
BslI	CCNNNNNNNGG	1 cut(s)	795
BsmAI	GTCTC	1 cut(s)	30
BsmFI	GGGAC	2 cut(s)	499, 751
BsnI	GGCC	1 cut(s)	287
Bso31I	GGTCTC	1 cut(s)	30
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	4 cut(s)	133, 309, 463, 544
Bsp19I	CCATGG	1 cut(s)	85
BspACI	CCGC	2 cut(s)	130, 523
BspANI	GGCC	1 cut(s)	287
BspCNI	CTCAG	2 cut(s)	238, 938
BspFNI	CGCG	1 cut(s)	132
BspLI	GGNNCC	2 cut(s)	311, 774
BspMAI	CTGCAG	1 cut(s)	888
BspPI	GGATC	4 cut(s)	304, 317, 458, 539
BspQI	GCTCTTC	1 cut(s)	917
BspT107I	GGYRCC	1 cut(s)	772
BspTNI	GGTCTC	1 cut(s)	30
BsrDI	GCAATG	2 cut(s)	650, 676
BssECI	CCNNGG	3 cut(s)	85, 299, 482
BssMI	GATC	4 cut(s)	133, 309, 463, 544
BssT1I	CCWWGG	2 cut(s)	85, 299
Bst2UI	CCWGG	1 cut(s)	483
Bst4CI	ACNGT	1 cut(s)	939
Bst6I	CTCTTC	1 cut(s)	917
BstBAI	YACGTR	1 cut(s)	553
BstDEI	CTNAG	4 cut(s)	246, 317, 424, 925
BstDSI	CCRYGG	1 cut(s)	85
BstF5I	GGATG	1 cut(s)	582
BstFNI	CGCG	1 cut(s)	132
BstKTI	GATC	4 cut(s)	136, 312, 466, 547
BstMAI	GTCTC	1 cut(s)	30
BstMBI	GATC	4 cut(s)	133, 309, 463, 544
BstMWI	GCNNNNNNNGC	2 cut(s)	251, 883
BstNI	CCWGG	1 cut(s)	483
BstSCI	CCNGG	1 cut(s)	481
BstSFI	CTRYAG	3 cut(s)	255, 717, 884
BstUI	CGCG	1 cut(s)	132
BstV1I	GCAGC	1 cut(s)	340
BstX2I	RGATCY	1 cut(s)	309
BstXI	CCANNNNNNTGG	2 cut(s)	149, 555
BstYI	RGATCY	1 cut(s)	309
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	287
BtgI	CCRYGG	1 cut(s)	85
BtsCI	GGATG	1 cut(s)	582
BtsI	GCAGTG	1 cut(s)	540
BtsIMutI	CAGTG	2 cut(s)	505, 540
CaiI	CAGNNNCTG	1 cut(s)	746
Cfr13I	GGNCC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	5 cut(s)	86, 332, 694, 734, 943
CviQI	GTAC	1 cut(s)	826
DdeI	CTNAG	4 cut(s)	246, 317, 424, 925
DpnI	GATC	4 cut(s)	135, 311, 465, 546
DpnII	GATC	4 cut(s)	133, 309, 463, 544
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
Ecl136II	GAGCTC	1 cut(s)	343
Eco130I	CCWWGG	2 cut(s)	85, 299
Eco24I	GRGCYC	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	30
Eco32I	GATATC	1 cut(s)	725
Eco47I	GGWCC	1 cut(s)	181
Eco53kI	GAGCTC	1 cut(s)	343
Eco57I	CTGAAG	2 cut(s)	375, 528
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	481
EcoRV	GATATC	1 cut(s)	725
EcoT14I	CCWWGG	2 cut(s)	85, 299
EcoT38I	GRGCYC	1 cut(s)	345
ErhI	CCWWGG	2 cut(s)	85, 299
FaeI	CATG	5 cut(s)	89, 335, 697, 737, 946
FaqI	GGGAC	2 cut(s)	499, 751
FatI	CATG	5 cut(s)	85, 331, 693, 733, 942
Fnu4HI	GCNGC	1 cut(s)	329
FokI	GGATG	1 cut(s)	589
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	1 cut(s)	329
FspBI	CTAG	4 cut(s)	147, 410, 878, 978
GluI	GCNGC	1 cut(s)	329
HaeIII	GGCC	1 cut(s)	287
Hin1II	CATG	5 cut(s)	89, 335, 697, 737, 946
HindIII	AAGCTT	2 cut(s)	174, 417
HinfI	GANTC	1 cut(s)	369
HphI	GGTGA	2 cut(s)	109, 778
Hpy188I	TCNGA	4 cut(s)	273, 309, 355, 1007
Hpy188III	TCNNGA	4 cut(s)	818, 835, 954, 978
Hpy99I	CGWCG	1 cut(s)	83
HpyAV	CCTTC	4 cut(s)	120, 194, 323, 330
HpyCH4III	ACNGT	1 cut(s)	939
HpyCH4IV	ACGT	2 cut(s)	552, 688
HpyCH4V	TGCA	7 cut(s)	36, 64, 533, 676, 693, 886, 1001
HpyF10VI	GCNNNNNNNGC	2 cut(s)	251, 883
HpyF3I	CTNAG	4 cut(s)	246, 317, 424, 925
HpySE526I	ACGT	2 cut(s)	552, 688
Hsp92II	CATG	5 cut(s)	89, 335, 697, 737, 946
Kzo9I	GATC	4 cut(s)	133, 309, 463, 544
LguI	GCTCTTC	1 cut(s)	917
LmnI	GCTCC	2 cut(s)	340, 496
Lsp1109I	GCAGC	1 cut(s)	340
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	4 cut(s)	147, 410, 878, 978
MaeII	ACGT	2 cut(s)	552, 688
MaeIII	GTNAC	3 cut(s)	236, 259, 933
MalI	GATC	4 cut(s)	135, 311, 465, 546
MboI	GATC	4 cut(s)	133, 309, 463, 544
MboII	GAAGA	5 cut(s)	64, 176, 671, 871, 904
MfeI	CAATTG	1 cut(s)	984
MflI	RGATCY	1 cut(s)	309
MhlI	GDGCHC	1 cut(s)	345
MluCI	AATT	5 cut(s)	168, 216, 528, 957, 984
MmeI	TCCRAC	1 cut(s)	251
MroXI	GAANNNNTTC	2 cut(s)	373, 396
MseI	TTAA	3 cut(s)	171, 219, 561
MslI	CAYNNNNRTG	2 cut(s)	147, 553
MspR9I	CCNGG	1 cut(s)	483
MunI	CAATTG	1 cut(s)	984
MvaI	CCWGG	1 cut(s)	483
MvnI	CGCG	1 cut(s)	132
MwoI	GCNNNNNNNGC	2 cut(s)	251, 883
NcoI	CCATGG	1 cut(s)	85
NdeII	GATC	4 cut(s)	133, 309, 463, 544
NlaIII	CATG	5 cut(s)	89, 335, 697, 737, 946
NlaIV	GGNNCC	2 cut(s)	311, 774
PciSI	GCTCTTC	1 cut(s)	917
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdmI	GAANNNNTTC	2 cut(s)	373, 396
PfeI	GAWTC	1 cut(s)	369
PkrI	GCNGC	1 cut(s)	330
Ppu21I	YACGTR	1 cut(s)	553
PsiI	TTATAA	1 cut(s)	767
Psp124BI	GAGCTC	1 cut(s)	345
Psp1406I	AACGTT	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	481
PspGI	CCWGG	1 cut(s)	481
PspN4I	GGNNCC	2 cut(s)	311, 774
PspPI	GGNCC	1 cut(s)	181
PstI	CTGCAG	1 cut(s)	888
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	2 cut(s)	147, 553
SacI	GAGCTC	1 cut(s)	345
SapI	GCTCTTC	1 cut(s)	917
SaqAI	TTAA	3 cut(s)	171, 219, 561
SatI	GCNGC	1 cut(s)	329
Sau3AI	GATC	4 cut(s)	133, 309, 463, 544
Sau96I	GGNCC	1 cut(s)	181
ScrFI	CCNGG	1 cut(s)	483
SduI	GDGCHC	1 cut(s)	345
SfaNI	GCATC	1 cut(s)	45
SfcI	CTRYAG	3 cut(s)	255, 717, 884
SinI	GGWCC	1 cut(s)	181
SmiMI	CAYNNNNRTG	2 cut(s)	147, 553
SmlI	CTYRAG	1 cut(s)	872
SmoI	CTYRAG	1 cut(s)	872
Sse9I	AATT	5 cut(s)	168, 216, 528, 957, 984
SsiI	CCGC	2 cut(s)	130, 523
SspMI	CTAG	4 cut(s)	147, 410, 878, 978
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	85, 299
TaaI	ACNGT	1 cut(s)	939
TaiI	ACGT	2 cut(s)	555, 691
TaqI	TCGA	2 cut(s)	187, 834
TasI	AATT	5 cut(s)	168, 216, 528, 957, 984
TfiI	GAWTC	1 cut(s)	369
Tru1I	TTAA	3 cut(s)	171, 219, 561
Tru9I	TTAA	3 cut(s)	171, 219, 561
TscAI	CASTG	2 cut(s)	505, 540
TseI	GCWGC	1 cut(s)	328
TspDTI	ATGAA	2 cut(s)	659, 931
TspGWI	ACGGA	2 cut(s)	67, 456
TspRI	CASTG	2 cut(s)	505, 540
VpaK11BI	GGWCC	1 cut(s)	181
XapI	RAATTY	1 cut(s)	957
XbaI	TCTAGA	1 cut(s)	977
XmnI	GAANNNNTTC	2 cut(s)	373, 396
XspI	CTAG	4 cut(s)	147, 410, 878, 978

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.