Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008016

Physical Location & Seq

Genomic Coordinates Forward (+)

48262270 .. 48264751

Gene Structure 2482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0329500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1293 bp

ATGGGTTCGACCGTGATATCAATTCCAGATGGAGAGCTTTCTCTTCCTCTTCCCAGCATTAAGAAAGAGAAGGAGAGACCAAACAAGCTTTCAATTATTTTCTCCTATCTTGGAGAGCTACAAAAGAACAGGCAGAAAATGAGAAAGCTGATTCACAGCATCAAGGTTGGGATTGCACTGGTTTTGGTTTCACTTCTCTATCTGCTCGACCCTCTCTATGAACAAGTCGGAGAAAATGCCATGTGGGCTATAATGACCGTCGTCGTCATCTTCGAGTTCTTTGCAGGTGCTACACTTAGCAAGGGCATAAACCGAGGATTGGGAACCATCTTAGGAGGTGGGCTTGGCTGCTCAGCTGCAACTTTAGCTCAAGAAGTTACTGGCATGGGCGAGGCCAGCACCATAATCATTGGTTCTTCTGTATTTGTCATCGGTGCAGCTGGGACATACACTAGATTACAGCCGAGCATCAAGAAGAGATACGACTATGCAGCAATGATATTCATACTCACCTTCAATCTGGTGGTTGTTTCGGGTTTACGTGCCGAGGAGGTGTTGAAATTGGCTCGTGAGCGGCTTTCAACCATCGGAATGGGTTTCGCCGTCTGCATCATTATAAGCTTGCTCGTCTTCCCCACATGGGCCAGTGATGAGCTTCATGACTCTTTATCCAGTAAATTCCAAGCCCTTGCAAAAGCTATTGAAGAATGCCTTGAAGATTACTTCAGATTAAATAGTGAAAAGGATAACCAGCCTGGCCAACAGAGTTCCAGTTCCGGTAGTTGCAAATCGGTGTTGCACTCTAAGTCTAAAGATGAGTCGCTGGCAAATTTTGCGAAGTGGGAACCATGGCATGGGAAATTTGGTCTTTACTACCCATGGAACAAATACCTACAGGTTGGAGAGCAGCTAAGAGACCTCGCTACCATTGTCCTTTCCCTCAAAGCCTGTCTTCAATCTCCTAGACAGCCGTCGTCAAGTGTGAGACAGTCGATCAAAGAGCCTAGCAAAGCTGTAGGGTTGGCACTCGCATTGACCCTGCGAGAGCTCGGAGAGAGCGTTACGAAGATGAGAAGAAGCCAACAAGAAGCTGTGATCATGCCCAAGTTGAAGTCAATGAGAGTAGAGCTGAACTCCATCATTTCTTCTTCCAAGTTTGGACCACTAGAGAATGTTGATGAACTTGCTATTTCAAGCTTTGTCTTCCTGTTGATGGAAATTGTGGAAAAAGTTGAAGAATTGGTAAAGGAGGTTGAAGAACTTGGAGAACTCGCTGATTTTGGTACCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004180 GO:0004181 GO:0005575 GO:0005576 GO:0005615 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008235 GO:0008237 GO:0008238 GO:0016787 GO:0019538 GO:0043170 GO:0044238 GO:0044421 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M14

Protein Analysis

430

Amino Acids

47.29

Weight (kDa)

8.12

Isoelectric Point (pI)

42.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ALMT	PF11744	44 - 383	8.5e-118	Aluminium activated malate transporter
FUSC_2	PF13515	71 - 206	3.1e-10	Fusaric acid resistance protein-like
FUSC	PF04632	78 - 239	3.1e-08	Fusaric acid resistance protein family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008016)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42320 AT5G42320
fragaria_vesca	FvH4_2g37450
malus_domestica	MD00G1076900.v1.1 MD08G1002400.v1.1 MD12G1003300.v1.1 MD15G1002000.v1.1
prunus_persica	Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1 Prupe.1G354500_v2.0.a1
pyrus_communis	pycom08g00210 pycom15g00090
rosa_chinensis	RchiOBHm_Chr6g0304271
rosa_laevigata	RLG00000010996
rosa_multiflora	Rmu_ssc0000218.1_g000027
rosa_roxburghii	Rroxscaffold_7G00163890
rosa_rugosa	Rorug05G0331800 Rorug06G0329400 Rorug06G0329500
rosa_samantha	Rh6AG443000 Rh6BG459500 Rh6CG455700 Rh6DG442500
rosa_wichuraiana	Rw6G038430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	617
AarI	CACCTGC	1 cut(s)	275
Acc36I	ACCTGC	1 cut(s)	275
Acc65I	GGTACC	1 cut(s)	1283
AccB1I	GGYRCC	1 cut(s)	1283
AccB7I	CCANNNNNTGG	1 cut(s)	854
AccBSI	CCGCTC	1 cut(s)	574
AciI	CCGC	1 cut(s)	574
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	3 cut(s)	677, 829, 860
AcuI	CTGAAG	1 cut(s)	709
AfaI	GTAC	1 cut(s)	1285
AfiI	CCNNNNNNNGG	4 cut(s)	319, 640, 854, 1213
AjnI	CCWGG	1 cut(s)	754
AjuI	GAANNNNNNNTTGG	2 cut(s)	73, 105
Alw21I	GWGCWC	1 cut(s)	1050
Alw26I	GTCTC	3 cut(s)	70, 909, 979
AoxI	GGCC	3 cut(s)	393, 642, 757
ApeKI	GCWGC	5 cut(s)	348, 356, 437, 491, 907
ApoI	RAATTY	3 cut(s)	677, 829, 860
Asp718I	GGTACC	1 cut(s)	1283
AspS9I	GGNCC	2 cut(s)	642, 1160
AsuHPI	GGTGA	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	1160
BalI	TGGCCA	1 cut(s)	759
BanI	GGYRCC	1 cut(s)	1283
BanII	GRGCYC	1 cut(s)	1050
BauI	CACGAG	1 cut(s)	567
BbsI	GAAGAC	3 cut(s)	622, 944, 1195
Bbv12I	GWGCWC	1 cut(s)	1050
BbvI	GCAGC	5 cut(s)	335, 343, 449, 503, 919
BccI	CCATC	5 cut(s)	23, 335, 593, 1145, 1207
BceAI	ACGGC	2 cut(s)	587, 955
BcgI	CGANNNNNNTGC	2 cut(s)	263, 297
BciT130I	CCWGG	1 cut(s)	756
BclI	TGATCA	1 cut(s)	1095
BcoDI	GTCTC	3 cut(s)	70, 909, 979
BfaI	CTAG	4 cut(s)	453, 963, 1005, 1166
BfmI	CTRYAG	2 cut(s)	893, 1014
BfuAI	ACCTGC	1 cut(s)	275
BglI	GCCNNNNNGGC	1 cut(s)	245
BisI	GCNGC	6 cut(s)	349, 357, 438, 492, 575, 908
BlpI	GCTNAGC	1 cut(s)	352
BlsI	GCNGC	6 cut(s)	350, 358, 439, 493, 576, 909
Bme1390I	CCNGG	1 cut(s)	756
Bme18I	GGWCC	1 cut(s)	1160
BmgT120I	GGNCC	2 cut(s)	642, 1160
BmiI	GGNNCC	3 cut(s)	325, 846, 1285
BmrFI	CCNGG	1 cut(s)	756
BmsI	GCATC	3 cut(s)	168, 477, 618
BoxI	GACNNNNGTC	2 cut(s)	260, 970
BpiI	GAAGAC	3 cut(s)	622, 944, 1195
BplI	GAGNNNNNCTC	2 cut(s)	1118, 1150
Bpu1102I	GCTNAGC	1 cut(s)	352
BpuEI	CTTGAG	1 cut(s)	354
BsaAI	YACGTR	1 cut(s)	542
BsaI	GGTCTC	2 cut(s)	70, 909
BsaJI	CCNNGG	4 cut(s)	313, 546, 848, 878
BsaWI	WCCGGW	1 cut(s)	776
BsaXI	ACNNNNNCTCC	2 cut(s)	1044, 1074
Bsc4I	CCNNNNNNNGG	4 cut(s)	319, 640, 854, 1213
Bse1I	ACTGG	5 cut(s)	183, 385, 645, 672, 771
Bse3DI	GCAATG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	756
BseDI	CCNNGG	4 cut(s)	313, 546, 848, 878
BseLI	CCNNNNNNNGG	4 cut(s)	319, 640, 854, 1213
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	366
BseNI	ACTGG	5 cut(s)	183, 385, 645, 672, 771
BseRI	GAGGAG	1 cut(s)	563
BseXI	GCAGC	5 cut(s)	335, 343, 449, 503, 919
BseYI	CCCAGC	2 cut(s)	53, 440
BsgI	GTGCAG	1 cut(s)	456
Bsh1285I	CGRYCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	395, 644, 759
BshNI	GGYRCC	1 cut(s)	1283
BsiEI	CGRYCG	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	1050
BsiSI	CCGG	1 cut(s)	777
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	4 cut(s)	319, 640, 854, 1213
BsmAI	GTCTC	3 cut(s)	70, 909, 979
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	713
BsnI	GGCC	3 cut(s)	395, 644, 759
Bso31I	GGTCTC	2 cut(s)	70, 909
Bsp1286I	GDGCHC	1 cut(s)	1050
Bsp143I	GATC	2 cut(s)	993, 1095
Bsp1720I	GCTNAGC	1 cut(s)	352
Bsp19I	CCATGG	2 cut(s)	848, 878
BspACI	CCGC	1 cut(s)	574
BspANI	GGCC	3 cut(s)	395, 644, 759
BspCNI	CTCAG	1 cut(s)	365
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	3 cut(s)	325, 846, 1285
BspMI	ACCTGC	1 cut(s)	275
BspT107I	GGYRCC	1 cut(s)	1283
BspTNI	GGTCTC	2 cut(s)	70, 909
BsrBI	CCGCTC	1 cut(s)	574
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	5 cut(s)	183, 385, 645, 672, 771
BssECI	CCNNGG	4 cut(s)	313, 546, 848, 878
BssMI	GATC	2 cut(s)	993, 1095
BssSI	CACGAG	1 cut(s)	567
BssT1I	CCWWGG	2 cut(s)	848, 878
Bst2BI	CACGAG	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	756
Bst4CI	ACNGT	3 cut(s)	13, 259, 990
Bst6I	CTCTTC	3 cut(s)	48, 54, 470
BstAPI	GCANNNNNTGC	1 cut(s)	833
BstBAI	YACGTR	1 cut(s)	542
BstC8I	GCNNGC	3 cut(s)	397, 623, 825
BstDEI	CTNAG	5 cut(s)	296, 331, 352, 804, 911
BstDSI	CCRYGG	2 cut(s)	848, 878
BstKTI	GATC	2 cut(s)	996, 1098
BstMAI	GTCTC	3 cut(s)	70, 909, 979
BstMBI	GATC	2 cut(s)	993, 1095
BstMCI	CGRYCG	1 cut(s)	12
BstMWI	GCNNNNNNNGC	4 cut(s)	245, 365, 396, 833
BstNI	CCWGG	1 cut(s)	756
BstPAI	GACNNNNGTC	2 cut(s)	260, 970
BstSCI	CCNGG	1 cut(s)	754
BstSFI	CTRYAG	2 cut(s)	893, 1014
BstV1I	GCAGC	5 cut(s)	335, 343, 449, 503, 919
BstV2I	GAAGAC	3 cut(s)	622, 944, 1195
BstXI	CCANNNNNNTGG	1 cut(s)	592
BsuRI	GGCC	3 cut(s)	395, 644, 759
BtgI	CCRYGG	2 cut(s)	848, 878
BtsIMutI	CAGTG	2 cut(s)	176, 652
BveI	ACCTGC	1 cut(s)	275
Cac8I	GCNNGC	3 cut(s)	397, 623, 825
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	2 cut(s)	642, 1160
Csp6I	GTAC	1 cut(s)	1284
CviAII	CATG	8 cut(s)	241, 385, 639, 659, 849, 854, 879, 1099
CviQI	GTAC	1 cut(s)	1284
DdeI	CTNAG	5 cut(s)	296, 331, 352, 804, 911
DpnI	GATC	2 cut(s)	995, 1097
DpnII	GATC	2 cut(s)	993, 1095
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	3 cut(s)	48, 54, 470
EarI	CTCTTC	3 cut(s)	48, 54, 470
Ecl136II	GAGCTC	1 cut(s)	1048
Eco130I	CCWWGG	2 cut(s)	848, 878
Eco24I	GRGCYC	1 cut(s)	1050
Eco31I	GGTCTC	2 cut(s)	70, 909
Eco32I	GATATC	1 cut(s)	18
Eco47I	GGWCC	1 cut(s)	1160
Eco53kI	GAGCTC	1 cut(s)	1048
Eco57I	CTGAAG	1 cut(s)	709
EcoICRI	GAGCTC	1 cut(s)	1048
EcoRII	CCWGG	1 cut(s)	754
EcoRV	GATATC	1 cut(s)	18
EcoT14I	CCWWGG	2 cut(s)	848, 878
EcoT38I	GRGCYC	1 cut(s)	1050
ErhI	CCWWGG	2 cut(s)	848, 878
FaeI	CATG	8 cut(s)	244, 388, 642, 662, 852, 857, 882, 1102
FalI	AAGNNNNNCTT	4 cut(s)	696, 728, 936, 968
FaqI	GGGAC	1 cut(s)	457
FatI	CATG	8 cut(s)	240, 384, 638, 658, 848, 853, 878, 1098
FbaI	TGATCA	1 cut(s)	1095
Fnu4HI	GCNGC	6 cut(s)	349, 357, 438, 492, 575, 908
FriOI	GRGCYC	1 cut(s)	1050
Fsp4HI	GCNGC	6 cut(s)	349, 357, 438, 492, 575, 908
FspBI	CTAG	4 cut(s)	453, 963, 1005, 1166
GluI	GCNGC	6 cut(s)	349, 357, 438, 492, 575, 908
GsaI	CCCAGC	2 cut(s)	57, 444
HaeIII	GGCC	3 cut(s)	395, 644, 759
HapII	CCGG	1 cut(s)	777
Hin1II	CATG	8 cut(s)	244, 388, 642, 662, 852, 857, 882, 1102
HindIII	AAGCTT	3 cut(s)	86, 619, 1195
HinfI	GANTC	3 cut(s)	151, 662, 818
HpaII	CCGG	1 cut(s)	777
HphI	GGTGA	1 cut(s)	502
Hpy166II	GTNNAC	1 cut(s)	539
Hpy188I	TCNGA	4 cut(s)	230, 590, 728, 1052
Hpy188III	TCNNGA	5 cut(s)	26, 371, 472, 569, 659
Hpy8I	GTNNAC	1 cut(s)	539
Hpy99I	CGWCG	3 cut(s)	263, 266, 976
HpyAV	CCTTC	2 cut(s)	64, 523
HpyCH4III	ACNGT	3 cut(s)	13, 259, 990
HpyCH4IV	ACGT	1 cut(s)	541
HpyCH4V	TGCA	9 cut(s)	176, 284, 359, 437, 491, 609, 692, 786, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	245, 365, 396, 833
HpyF3I	CTNAG	5 cut(s)	296, 331, 352, 804, 911
HpySE526I	ACGT	1 cut(s)	541
Hsp92II	CATG	8 cut(s)	244, 388, 642, 662, 852, 857, 882, 1102
KpnI	GGTACC	1 cut(s)	1287
Ksp22I	TGATCA	1 cut(s)	1095
Kzo9I	GATC	2 cut(s)	993, 1095
Lsp1109I	GCAGC	5 cut(s)	335, 343, 449, 503, 919
LweI	GCATC	3 cut(s)	168, 477, 618
MaeI	CTAG	4 cut(s)	453, 963, 1005, 1166
MaeII	ACGT	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	376, 1060
MalI	GATC	2 cut(s)	995, 1097
MbiI	CCGCTC	1 cut(s)	574
MboI	GATC	2 cut(s)	993, 1095
MhlI	GDGCHC	1 cut(s)	1050
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	8 cut(s)	21, 93, 560, 677, 829, 860, 1218, 1238
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	2 cut(s)	656, 827
MmeI	TCCRAC	2 cut(s)	208, 880
Mox20I	TGGCCA	1 cut(s)	759
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	60, 731
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	2 cut(s)	356, 440
MspI	CCGG	1 cut(s)	777
MspR9I	CCNGG	1 cut(s)	756
Mva1269I	GAATGC	1 cut(s)	713
MvaI	CCWGG	1 cut(s)	756
MwoI	GCNNNNNNNGC	4 cut(s)	245, 365, 396, 833
NcoI	CCATGG	2 cut(s)	848, 878
NdeII	GATC	2 cut(s)	993, 1095
NlaIII	CATG	8 cut(s)	244, 388, 642, 662, 852, 857, 882, 1102
NlaIV	GGNNCC	3 cut(s)	325, 846, 1285
NmeAIII	GCCGAG	2 cut(s)	489, 571
PagI	TCATGA	1 cut(s)	658
PaqCI	CACCTGC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	2 cut(s)	270, 1056
PctI	GAATGC	1 cut(s)	713
PfeI	GAWTC	1 cut(s)	151
PflMI	CCANNNNNTGG	1 cut(s)	854
PkrI	GCNGC	6 cut(s)	350, 358, 439, 493, 576, 909
PleI	GAGTC	2 cut(s)	656, 826
PpsI	GAGTC	2 cut(s)	656, 826
Ppu21I	YACGTR	1 cut(s)	542
PshAI	GACNNNNGTC	2 cut(s)	260, 970
PsiI	TTATAA	1 cut(s)	617
Psp124BI	GAGCTC	1 cut(s)	1050
Psp6I	CCWGG	1 cut(s)	754
PspFI	CCCAGC	2 cut(s)	53, 440
PspGI	CCWGG	1 cut(s)	754
PspN4I	GGNNCC	3 cut(s)	325, 846, 1285
PspPI	GGNCC	2 cut(s)	642, 1160
PvuII	CAGCTG	2 cut(s)	356, 440
RsaI	GTAC	1 cut(s)	1285
RsaNI	GTAC	1 cut(s)	1284
RseI	CAYNNNNRTG	1 cut(s)	590
SacI	GAGCTC	1 cut(s)	1050
SaqAI	TTAA	2 cut(s)	60, 731
SatI	GCNGC	6 cut(s)	349, 357, 438, 492, 575, 908
Sau3AI	GATC	2 cut(s)	993, 1095
Sau96I	GGNCC	2 cut(s)	642, 1160
SchI	GAGTC	2 cut(s)	656, 827
ScrFI	CCNGG	1 cut(s)	756
SduI	GDGCHC	1 cut(s)	1050
SfaNI	GCATC	3 cut(s)	168, 477, 618
SfcI	CTRYAG	2 cut(s)	893, 1014
SinI	GGWCC	1 cut(s)	1160
SmiMI	CAYNNNNRTG	1 cut(s)	590
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	8 cut(s)	21, 93, 560, 677, 829, 860, 1218, 1238
SsiI	CCGC	1 cut(s)	574
SspMI	CTAG	4 cut(s)	453, 963, 1005, 1166
SstI	GAGCTC	1 cut(s)	1050
StyD4I	CCNGG	1 cut(s)	754
StyI	CCWWGG	2 cut(s)	848, 878
TaaI	ACNGT	3 cut(s)	13, 259, 990
TaiI	ACGT	1 cut(s)	544
TaqI	TCGA	4 cut(s)	8, 207, 273, 992
TasI	AATT	8 cut(s)	21, 93, 560, 677, 829, 860, 1218, 1238
TauI	GCSGC	1 cut(s)	577
TfiI	GAWTC	1 cut(s)	151
Tru1I	TTAA	2 cut(s)	60, 731
Tru9I	TTAA	2 cut(s)	60, 731
TscAI	CASTG	2 cut(s)	183, 652
TseI	GCWGC	5 cut(s)	348, 356, 437, 491, 907
TspDTI	ATGAA	4 cut(s)	234, 493, 647, 1194
TspRI	CASTG	2 cut(s)	183, 652
Van91I	CCANNNNNTGG	1 cut(s)	854
VpaK11BI	GGWCC	1 cut(s)	1160
XapI	RAATTY	3 cut(s)	677, 829, 860
XspI	CTAG	4 cut(s)	453, 963, 1005, 1166

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.