AT5G42570

B-cell receptor-associated

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003828
Physical Location & Seq
Reverse (-)
17021218 .. 17022723
1506 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G42570.1

Sequence Viewer

Length: 657 bp
ATGATCCACCTCCTTTACACAGTGATCTTCGCCGAAATGGCACTGATCCTTCTCCTCCTCTTCAAAACTCCTCTCCGAAAGCTAATCATCCTCACCTTCGATCGAATCAAACGTGGCCGTGGTCCCGTCGTCGTCAAAACCATAGGAACCACCGTATTCGTCGTTCTCTTGTCGAGTATCTACAGTTTGGTTAATATCCAACGCCGATCTGAAGATGGTGCTGTTCTTAATCCCACTGATCAAGTCCTTGCGTCTAAGCATCTTCTCGAAGCTTCTCTTATGGGGTTTGTGTTGTTTCTCTCGCTTATGATTGATAGACTACACCATTACATTAGAGAGCTTCGTTTGTTGAGGAAGACAATGGAGACTGCAAAGAAGCAGAACAGAGGTTTTGAGGATGGGAAAACCACAAGTGGGGAGGAAGTGAAAGCGCTCGGGGAAGAGATCGCGGCGTTAAAAGCGAAGATAAAGACGTTAGAATCGGAGAGTGAAAGTAAAGGCAAAGAATTGAAAGGTGCACAAGGTGAAACAGAGGCTTTGAGAAAGCAAGCTGATGGGTTTCTTATGGAGTATGATAGGTTGCTTGAGGATAATCAGAATTTGAGGAACCAGTTGGAGTCTATTGGGCATAGTCCTGAGGGAAAGAAGGGTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

218

Amino Acids

24.56

Weight (kDa)

9.32

Isoelectric Point (pI)

38.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APG6_N PF17675 99 - 209 1.1e-07 Apg6 coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 449
AciI CCGC 1 cut(s) 449
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 115
AcsI RAATTY 1 cut(s) 598
AcuI CTGAAG 1 cut(s) 231
AdeI CACNNNGTG 1 cut(s) 524
AfeI AGCGCT 1 cut(s) 432
AfiI CCNNNNNNNGG 1 cut(s) 414
AgsI TTSAA 2 cut(s) 64, 511
AluBI AGCT 4 cut(s) 82, 272, 340, 551
AluI AGCT 4 cut(s) 82, 272, 340, 551
Alw21I GWGCWC 1 cut(s) 520
Alw26I GTCTC 1 cut(s) 359
Alw44I GTGCAC 1 cut(s) 516
AlwI GGATC 1 cut(s) 40
Ama87I CYCGRG 1 cut(s) 434
Aor51HI AGCGCT 1 cut(s) 432
AoxI GGCC 1 cut(s) 115
ApaLI GTGCAC 1 cut(s) 516
ApoI RAATTY 1 cut(s) 598
AspLEI GCGC 1 cut(s) 433
AspS9I GGNCC 1 cut(s) 122
AsuHPI GGTGA 2 cut(s) 85, 536
AvaI CYCGRG 1 cut(s) 434
AvaII GGWCC 1 cut(s) 122
AxyI CCTNAGG 1 cut(s) 636
BaeGI GKGCMC 1 cut(s) 520
BbsI GAAGAC 1 cut(s) 362
Bbv12I GWGCWC 1 cut(s) 520
BccI CCATC 3 cut(s) 209, 392, 548
BceAI ACGGC 1 cut(s) 102
BclI TGATCA 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 359
BfmI CTRYAG 1 cut(s) 181
BfoI RGCGCY 1 cut(s) 434
BglI GCCNNNNNGGC 1 cut(s) 38
BisI GCNGC 1 cut(s) 450
BlsI GCNGC 1 cut(s) 451
Bme18I GGWCC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 434
BmgT120I GGNCC 1 cut(s) 122
BmiI GGNNCC 3 cut(s) 124, 148, 608
BmsI GCATC 1 cut(s) 268
BpiI GAAGAC 1 cut(s) 362
BpuEI CTTGAG 1 cut(s) 605
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 414
Bse1I ACTGG 1 cut(s) 610
Bse21I CCTNAGG 1 cut(s) 636
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 2 cut(s) 87, 403
BseLI CCNNNNNNNGG 1 cut(s) 414
BseMII CTCAG 1 cut(s) 627
BseNI ACTGG 1 cut(s) 610
BseRI GAGGAG 3 cut(s) 44, 47, 60
BseSI GKGCMC 1 cut(s) 520
Bsh1236I CGCG 1 cut(s) 449
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 1 cut(s) 117
BsiEI CGRYCG 1 cut(s) 103
BsiHKAI GWGCWC 1 cut(s) 520
BsiHKCI CYCGRG 1 cut(s) 434
BslFI GGGAC 1 cut(s) 108
BslI CCNNNNNNNGG 1 cut(s) 414
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 108
BsnI GGCC 1 cut(s) 117
BsoBI CYCGRG 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 520
Bsp143I GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
BspACI CCGC 1 cut(s) 449
BspANI GGCC 1 cut(s) 117
BspCNI CTCAG 1 cut(s) 628
BspFNI CGCG 1 cut(s) 449
BspLI GGNNCC 3 cut(s) 124, 148, 608
BspPI GGATC 1 cut(s) 40
BsrI ACTGG 1 cut(s) 610
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
Bst4CI ACNGT 3 cut(s) 22, 154, 185
Bst6I CTCTTC 2 cut(s) 65, 435
BstC8I GCNNGC 1 cut(s) 549
BstDEI CTNAG 2 cut(s) 255, 636
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 2 cut(s) 87, 403
BstFNI CGCG 1 cut(s) 449
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 1 cut(s) 433
BstKTI GATC 7 cut(s) 6, 27, 48, 103, 209, 241, 447
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
BstMCI CGRYCG 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 38, 458
BstSFI CTRYAG 1 cut(s) 181
BstSLI GKGCMC 1 cut(s) 520
BstUI CGCG 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 362
Bsu36I CCTNAGG 1 cut(s) 636
BsuRI GGCC 1 cut(s) 117
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 2 cut(s) 87, 403
BtsIMutI CAGTG 3 cut(s) 27, 41, 234
Cac8I GCNNGC 1 cut(s) 549
CfoI GCGC 1 cut(s) 433
Cfr13I GGNCC 1 cut(s) 122
CseI GACGC 1 cut(s) 240
CviJI RGCY 6 cut(s) 82, 117, 272, 340, 536, 551
CviKI_1 RGCY 6 cut(s) 82, 117, 272, 340, 536, 551
DdeI CTNAG 2 cut(s) 255, 636
DpnI GATC 7 cut(s) 5, 26, 47, 102, 208, 240, 446
DpnII GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
DraIII CACNNNGTG 1 cut(s) 524
EaeI YGGCCR 1 cut(s) 115
Eam1104I CTCTTC 2 cut(s) 65, 435
EarI CTCTTC 2 cut(s) 65, 435
Eco47I GGWCC 1 cut(s) 122
Eco47III AGCGCT 1 cut(s) 432
Eco57I CTGAAG 1 cut(s) 231
Eco81I CCTNAGG 1 cut(s) 636
Eco88I CYCGRG 1 cut(s) 434
FaiI YATR 7 cut(s) 143, 281, 308, 566, 573, 630, 653
FalI AAGNNNNNCTT 2 cut(s) 261, 293
FaqI GGGAC 1 cut(s) 108
FbaI TGATCA 1 cut(s) 238
Fnu4HI GCNGC 1 cut(s) 450
FokI GGATG 2 cut(s) 74, 410
Fsp4HI GCNGC 1 cut(s) 450
GlaI GCGC 1 cut(s) 432
GluI GCNGC 1 cut(s) 450
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 1 cut(s) 117
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 433
Hin6I GCGC 1 cut(s) 431
HinP1I GCGC 1 cut(s) 431
HindIII AAGCTT 1 cut(s) 270
HinfI GANTC 3 cut(s) 105, 479, 617
HphI GGTGA 2 cut(s) 85, 536
Hpy166II GTNNAC 1 cut(s) 518
Hpy188I TCNGA 4 cut(s) 77, 211, 484, 597
Hpy188III TCNNGA 2 cut(s) 266, 635
Hpy8I GTNNAC 1 cut(s) 518
Hpy99I CGWCG 3 cut(s) 131, 134, 164
HpyAV CCTTC 3 cut(s) 59, 106, 640
HpyCH4III ACNGT 3 cut(s) 22, 154, 185
HpyCH4IV ACGT 2 cut(s) 112, 473
HpyCH4V TGCA 2 cut(s) 371, 518
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 458
HpyF3I CTNAG 2 cut(s) 255, 636
HpySE526I ACGT 2 cut(s) 112, 473
HspAI GCGC 1 cut(s) 431
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
LpnPI CCDG 2 cut(s) 623, 648
LweI GCATC 1 cut(s) 268
MaeII ACGT 2 cut(s) 112, 473
MalI GATC 7 cut(s) 5, 26, 47, 102, 208, 240, 446
MboI GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
MboII GAAGA 7 cut(s) 19, 52, 224, 254, 367, 452, 475
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 2 cut(s) 506, 598
MlyI GAGTC 1 cut(s) 626
MmeI TCCRAC 2 cut(s) 223, 594
MseI TTAA 3 cut(s) 192, 228, 455
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 38, 458
NdeII GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
NlaIV GGNNCC 3 cut(s) 124, 148, 608
PcsI WCGNNNNNNNCGW 1 cut(s) 109
PfeI GAWTC 2 cut(s) 105, 479
PkrI GCNGC 1 cut(s) 451
Ple19I CGATCG 1 cut(s) 103
PleI GAGTC 1 cut(s) 625
PpsI GAGTC 1 cut(s) 625
PspN4I GGNNCC 3 cut(s) 124, 148, 608
PspPI GGNCC 1 cut(s) 122
PsrI GAACNNNNNNTAC 2 cut(s) 147, 179
PvuI CGATCG 1 cut(s) 103
SaqAI TTAA 3 cut(s) 192, 228, 455
SatI GCNGC 1 cut(s) 450
Sau3AI GATC 7 cut(s) 3, 24, 45, 100, 206, 238, 444
Sau96I GGNCC 1 cut(s) 122
SchI GAGTC 1 cut(s) 626
SduI GDGCHC 1 cut(s) 520
SfaNI GCATC 1 cut(s) 268
SfcI CTRYAG 1 cut(s) 181
SinI GGWCC 1 cut(s) 122
SmlI CTYRAG 1 cut(s) 584
SmoI CTYRAG 1 cut(s) 584
Sse9I AATT 2 cut(s) 506, 598
SsiI CCGC 1 cut(s) 449
TaaI ACNGT 3 cut(s) 22, 154, 185
TaiI ACGT 2 cut(s) 115, 476
TaqI TCGA 4 cut(s) 99, 103, 173, 267
TasI AATT 2 cut(s) 506, 598
TauI GCSGC 1 cut(s) 452
TfiI GAWTC 2 cut(s) 105, 479
Tru1I TTAA 3 cut(s) 192, 228, 455
Tru9I TTAA 3 cut(s) 192, 228, 455
TscAI CASTG 3 cut(s) 27, 48, 241
TspRI CASTG 3 cut(s) 27, 48, 241
VneI GTGCAC 1 cut(s) 516
VpaK11BI GGWCC 1 cut(s) 122
XapI RAATTY 1 cut(s) 598
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.