MD10G1324100.v1.1

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0003828
Physical Location & Seq
Forward (+)
40479834 .. 40482417
2584 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1324100.v1.1.491

Sequence Viewer

Length: 669 bp
ATGATTCAGCTGCTGTTCGTAGTGATTTTATCAGAAATGGTTCTGATACTGGCGTTTCTGTTCAGGACCCCCTTCAGGAAGCTGGTGATTTTGGGGCTGGATCAGATCAAGCGCGGCCGCGGCCCCGTCGTGGTGAAGACGGTGGCGGCGACGGTGTTTGTGGTGCTGATGACCAACGTTTACAGCATAGTTAAGATCAGAGGGAGCCGGATCGACAAAGCTGCTGTTCTTAGTCCCACCGATCAGGTCCTTATGATCAAGCACCTTCTCGACGCCACTCTCATGGGATGCTCCCTATTTCTTGCTCTTATGATAGACAGACTACACCACTACATTAGAGAACTTCGTATACGAAGAAAGGGCATGGAAGCCCTTAAGAAACAGAACAGAGGATCTGAGGATGGAAAATCTAGCAGTTTGGATAAGATGAAAGTCTTGGAGAATGAGATGGCTACATTGCATACGAGACTCAAACAACTAGAATCTGAAATCGAGACAAAGACGAAAGATGTTCATACTGCAGAGTCCAGCATCCTTGCTCTAAGAAAACAATCGGAAGGGTTTCTTCTCGAGTATGATCGTTTACTTGAAGAAAACCAAAACTTAAAGAATCGGTTGCAGTCAGTTGACTGGAAAATGTCACGTTCAAGTAGCAAGAAAGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

223

Amino Acids

25.4

Weight (kDa)

9.89

Isoelectric Point (pI)

48.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31_Bap29_C PF18035 157 - 221 3.1e-06 Bap31/Bap29 cytoplasmic coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 349
AccII CGCG 2 cut(s) 114, 120
AciI CCGC 4 cut(s) 114, 118, 120, 146
AclI AACGTT 1 cut(s) 177
AclWI GGATC 3 cut(s) 108, 218, 400
AcoI YGGCCR 1 cut(s) 115
AcuI CTGAAG 1 cut(s) 58
AcyI GRCGYC 1 cut(s) 273
AfiI CCNNNNNNNGG 2 cut(s) 75, 130
AflII CTTAAG 1 cut(s) 374
AgsI TTSAA 2 cut(s) 590, 648
AluBI AGCT 3 cut(s) 10, 82, 221
AluI AGCT 3 cut(s) 10, 82, 221
Alw26I GTCTC 2 cut(s) 460, 488
AlwI GGATC 3 cut(s) 108, 218, 400
AlwNI CAGNNNCTG 1 cut(s) 13
Ama87I CYCGRG 1 cut(s) 569
AoxI GGCC 2 cut(s) 115, 121
ApeKI GCWGC 2 cut(s) 10, 221
Asp700I GAANNNNTTC 2 cut(s) 39, 561
AspLEI GCGC 1 cut(s) 114
AspS9I GGNCC 3 cut(s) 66, 122, 247
AsuHPI GGTGA 2 cut(s) 97, 145
AvaI CYCGRG 1 cut(s) 569
AvaII GGWCC 2 cut(s) 66, 247
BaeI ACNNNNGTAYC 2 cut(s) 38, 71
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 208
BccI CCATC 2 cut(s) 395, 442
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BclI TGATCA 1 cut(s) 255
BcoDI GTCTC 2 cut(s) 460, 488
BfaI CTAG 2 cut(s) 411, 479
BfmI CTRYAG 1 cut(s) 519
BfrI CTTAAG 1 cut(s) 374
BisI GCNGC 6 cut(s) 11, 115, 118, 121, 147, 222
BlsI GCNGC 6 cut(s) 12, 116, 119, 122, 148, 223
Bme18I GGWCC 2 cut(s) 66, 247
BmeT110I CYCGRG 1 cut(s) 569
BmgT120I GGNCC 3 cut(s) 66, 122, 247
BmiI GGNNCC 3 cut(s) 68, 124, 206
BmsI GCATC 2 cut(s) 278, 540
BpiI GAAGAC 1 cut(s) 143
BsaHI GRCGYC 1 cut(s) 273
BsaJI CCNNGG 1 cut(s) 118
Bsc4I CCNNNNNNNGG 2 cut(s) 75, 130
Bse1I ACTGG 2 cut(s) 54, 635
Bse3DI GCAATG 1 cut(s) 455
BseDI CCNNGG 1 cut(s) 118
BseGI GGATG 3 cut(s) 293, 406, 531
BseLI CCNNNNNNNGG 2 cut(s) 75, 130
BseMI GCAATG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 387
BseNI ACTGG 2 cut(s) 54, 635
BseX3I CGGCCG 1 cut(s) 115
BseXI GCAGC 1 cut(s) 208
Bsh1236I CGCG 2 cut(s) 114, 120
Bsh1285I CGRYCG 1 cut(s) 118
BshFI GGCC 2 cut(s) 117, 123
BsiEI CGRYCG 1 cut(s) 118
BsiHKCI CYCGRG 1 cut(s) 569
BsiSI CCGG 1 cut(s) 208
BslFI GGGAC 1 cut(s) 219
BslI CCNNNNNNNGG 2 cut(s) 75, 130
BsmAI GTCTC 2 cut(s) 460, 488
BsmFI GGGAC 1 cut(s) 219
BsnI GGCC 2 cut(s) 117, 123
BsoBI CYCGRG 1 cut(s) 569
Bsp143I GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
BspACI CCGC 4 cut(s) 114, 118, 120, 146
BspANI GGCC 2 cut(s) 117, 123
BspCNI CTCAG 1 cut(s) 388
BspFNI CGCG 2 cut(s) 114, 120
BspLI GGNNCC 3 cut(s) 68, 124, 206
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 3 cut(s) 108, 218, 400
BspTI CTTAAG 1 cut(s) 374
BsrDI GCAATG 1 cut(s) 455
BsrI ACTGG 2 cut(s) 54, 635
BssECI CCNNGG 1 cut(s) 118
BssMI GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
BssNAI GTATAC 1 cut(s) 350
BssNI GRCGYC 1 cut(s) 273
Bst1107I GTATAC 1 cut(s) 350
Bst4CI ACNGT 2 cut(s) 142, 154
BstACI GRCGYC 1 cut(s) 273
BstAFI CTTAAG 1 cut(s) 374
BstDEI CTNAG 3 cut(s) 230, 396, 542
BstDSI CCRYGG 1 cut(s) 118
BstF5I GGATG 3 cut(s) 293, 406, 531
BstFNI CGCG 2 cut(s) 114, 120
BstHHI GCGC 1 cut(s) 114
BstKTI GATC 8 cut(s) 103, 108, 198, 213, 244, 258, 395, 580
BstMAI GTCTC 2 cut(s) 460, 488
BstMBI GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
BstMCI CGRYCG 1 cut(s) 118
BstMWI GCNNNNNNNGC 1 cut(s) 120
BstSFI CTRYAG 1 cut(s) 519
BstUI CGCG 2 cut(s) 114, 120
BstV1I GCAGC 1 cut(s) 208
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 1 cut(s) 392
BstXI CCANNNNNNTGG 1 cut(s) 283
BstYI RGATCY 1 cut(s) 392
BstZ17I GTATAC 1 cut(s) 350
BstZI CGGCCG 1 cut(s) 115
BsuRI GGCC 2 cut(s) 117, 123
BtgI CCRYGG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 293, 406, 531
CaiI CAGNNNCTG 1 cut(s) 13
CciNI GCGGCCGC 1 cut(s) 115
CfoI GCGC 1 cut(s) 114
Cfr13I GGNCC 3 cut(s) 66, 122, 247
Cfr42I CCGCGG 1 cut(s) 121
CseI GACGC 1 cut(s) 281
CviAII CATG 2 cut(s) 283, 364
CviJI RGCY 9 cut(s) 10, 82, 97, 117, 123, 207, 221, 371, 452
CviKI_1 RGCY 9 cut(s) 10, 82, 97, 117, 123, 207, 221, 371, 452
DdeI CTNAG 3 cut(s) 230, 396, 542
DpnI GATC 8 cut(s) 102, 107, 197, 212, 243, 257, 394, 579
DpnII GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
EaeI YGGCCR 1 cut(s) 115
EagI CGGCCG 1 cut(s) 115
EclXI CGGCCG 1 cut(s) 115
Eco47I GGWCC 2 cut(s) 66, 247
Eco52I CGGCCG 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 58
Eco88I CYCGRG 1 cut(s) 569
EcoO109I RGGNCCY 2 cut(s) 66, 247
FaeI CATG 2 cut(s) 286, 367
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 1 cut(s) 219
FatI CATG 2 cut(s) 282, 363
FbaI TGATCA 1 cut(s) 255
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 6 cut(s) 11, 115, 118, 121, 147, 222
FokI GGATG 3 cut(s) 300, 413, 518
Fsp4HI GCNGC 6 cut(s) 11, 115, 118, 121, 147, 222
FspBI CTAG 2 cut(s) 411, 479
GlaI GCGC 1 cut(s) 113
GluI GCNGC 6 cut(s) 11, 115, 118, 121, 147, 222
HaeIII GGCC 2 cut(s) 117, 123
HapII CCGG 1 cut(s) 208
HgaI GACGC 1 cut(s) 281
HhaI GCGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 273
Hin1II CATG 2 cut(s) 286, 367
Hin6I GCGC 1 cut(s) 112
HinP1I GCGC 1 cut(s) 112
HincII GTYRAC 1 cut(s) 628
HindII GTYRAC 1 cut(s) 628
HinfI GANTC 6 cut(s) 4, 468, 482, 524, 610, 662
HpaII CCGG 1 cut(s) 208
HphI GGTGA 2 cut(s) 97, 145
Hpy166II GTNNAC 4 cut(s) 181, 350, 584, 628
Hpy188I TCNGA 7 cut(s) 34, 45, 105, 200, 397, 487, 556
Hpy188III TCNNGA 5 cut(s) 64, 76, 269, 493, 569
Hpy8I GTNNAC 4 cut(s) 181, 350, 584, 628
Hpy99I CGWCG 3 cut(s) 131, 154, 275
HpyAV CCTTC 3 cut(s) 82, 275, 551
HpyCH4III ACNGT 2 cut(s) 142, 154
HpyCH4IV ACGT 2 cut(s) 177, 643
HpyCH4V TGCA 3 cut(s) 460, 521, 619
HpyF10VI GCNNNNNNNGC 1 cut(s) 120
HpyF3I CTNAG 3 cut(s) 230, 396, 542
HpySE526I ACGT 2 cut(s) 177, 643
Hsp92I GRCGYC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 286, 367
HspAI GCGC 1 cut(s) 112
Ksp22I TGATCA 1 cut(s) 255
KspI CCGCGG 1 cut(s) 121
Kzo9I GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
LmnI GCTCC 2 cut(s) 204, 296
LpnPI CCDG 9 cut(s) 35, 49, 61, 68, 83, 221, 230, 541, 616
Lsp1109I GCAGC 1 cut(s) 208
LweI GCATC 2 cut(s) 278, 540
MaeI CTAG 2 cut(s) 411, 479
MaeII ACGT 2 cut(s) 177, 643
MaeIII GTNAC 1 cut(s) 639
MalI GATC 8 cut(s) 102, 107, 197, 212, 243, 257, 394, 579
MboI GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
MboII GAAGA 4 cut(s) 148, 366, 557, 602
MflI RGATCY 1 cut(s) 392
MlyI GAGTC 2 cut(s) 462, 533
MnlI CCTC 3 cut(s) 194, 383, 391
MroXI GAANNNNTTC 2 cut(s) 39, 561
MseI TTAA 3 cut(s) 192, 375, 605
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 2 cut(s) 10, 120
MspCI CTTAAG 1 cut(s) 374
MspI CCGG 1 cut(s) 208
MvnI CGCG 2 cut(s) 114, 120
MwoI GCNNNNNNNGC 1 cut(s) 120
NdeII GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
NlaIII CATG 2 cut(s) 286, 367
NlaIV GGNNCC 3 cut(s) 68, 124, 206
NmuCI GTSAC 1 cut(s) 639
NotI GCGGCCGC 1 cut(s) 115
PaeR7I CTCGAG 1 cut(s) 569
PcsI WCGNNNNNNNCGW 1 cut(s) 146
PdmI GAANNNNTTC 2 cut(s) 39, 561
PfeI GAWTC 4 cut(s) 4, 482, 610, 662
PkrI GCNGC 6 cut(s) 12, 116, 119, 122, 148, 223
PleI GAGTC 2 cut(s) 462, 532
PpsI GAGTC 2 cut(s) 462, 532
PpuMI RGGWCCY 2 cut(s) 66, 247
Psp1406I AACGTT 1 cut(s) 177
Psp5II RGGWCCY 2 cut(s) 66, 247
PspN4I GGNNCC 3 cut(s) 68, 124, 206
PspPI GGNCC 3 cut(s) 66, 122, 247
PspPPI RGGWCCY 2 cut(s) 66, 247
PsrI GAACNNNNNNTAC 2 cut(s) 333, 365
PstI CTGCAG 1 cut(s) 523
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 1 cut(s) 392
PvuII CAGCTG 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 281
SacII CCGCGG 1 cut(s) 121
SaqAI TTAA 3 cut(s) 192, 375, 605
SatI GCNGC 6 cut(s) 11, 115, 118, 121, 147, 222
Sau3AI GATC 8 cut(s) 100, 105, 195, 210, 241, 255, 392, 577
Sau96I GGNCC 3 cut(s) 66, 122, 247
SchI GAGTC 2 cut(s) 462, 533
SetI ASST 7 cut(s) 12, 84, 180, 223, 249, 267, 646
SfaNI GCATC 2 cut(s) 278, 540
SfcI CTRYAG 1 cut(s) 519
Sfr274I CTCGAG 1 cut(s) 569
Sfr303I CCGCGG 1 cut(s) 121
SgrBI CCGCGG 1 cut(s) 121
SinI GGWCC 2 cut(s) 66, 247
SlaI CTCGAG 1 cut(s) 569
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 374, 569
SmoI CTYRAG 2 cut(s) 374, 569
SsiI CCGC 4 cut(s) 114, 118, 120, 146
SspMI CTAG 2 cut(s) 411, 479
TaaI ACNGT 2 cut(s) 142, 154
TaiI ACGT 2 cut(s) 180, 646
TaqI TCGA 4 cut(s) 213, 270, 492, 570
TauI GCSGC 4 cut(s) 117, 120, 123, 149
TfiI GAWTC 4 cut(s) 4, 482, 610, 662
Tru1I TTAA 3 cut(s) 192, 375, 605
Tru9I TTAA 3 cut(s) 192, 375, 605
TseFI GTSAC 1 cut(s) 639
TseI GCWGC 2 cut(s) 10, 221
Tsp45I GTSAC 1 cut(s) 639
TspDTI ATGAA 3 cut(s) 443, 503, 654
Vha464I CTTAAG 1 cut(s) 374
VpaK11BI GGWCC 2 cut(s) 66, 247
XhoI CTCGAG 1 cut(s) 569
XmiI GTMKAC 1 cut(s) 349
XmnI GAANNNNTTC 2 cut(s) 39, 561
XspI CTAG 2 cut(s) 411, 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.