Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Forward (+)

8381923 .. 8384359

Gene Structure 2437 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1098700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTGCAGCTGCTGTACACGGTGATTTTCAGCGAAATGCTGCTGATTTTGATCTTGTTGTTTAAGTCCCCTCTGAGGAAGCTAGTGATACTGGCCTTGGATAAGATGAAGCGAGGGAAGGGCCCAGTGATGGTGAAGACGGTCGCTGGGACTGTATTTATTGTTCTTCTGGCCAACGTCTACAATCTGGTGGACATCAAGAACCGAACGAATGAATCTGGTGTACTCAACCCTACGGACGAGGTTCTCATGTCCATGAAAATGCTCGAAAATTCTCTTATGGGATTTTTTCTGTTTCTTTCACTGATGATGGATAGGTTACACCATTACATAAGAGAACTTCGATTCCTGAGGAAGGCGATGGAGGCTGCGAAAAGACAAAACCAAAGTTCTCAAGACGATAAAAACGGAAGTTCAGAGCAACTTAAGACCTTAGTACAAGAGAATGAGACATTGAGGACAAAGATCGAAACTCTGGAGTCTGAATATGAGACGAAAGCAAAGAAGGCAAAGGCGGCAGGAAGTGAGGTGGAGGCCCTAAGAAAGCAATCTGAAGGACTCCTTATGGAATACGACCGCTTGCTGGCAGACAACCAAAATCTCCGCAGTCAGTTAACATCAATTGAACAGAGCGCATCCCACTCGGATGGGAAGAAGAACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

222

Amino Acids

25.19

Weight (kDa)

9.28

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
APG6_N	PF17675	99 - 215	9e-06	Apg6 coiled-coil region
Bap31_Bap29_C	PF18035	155 - 201	3.8e-07	Bap31/Bap29 cytoplasmic coiled-coil domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	3 cut(s)	515, 577, 604
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	271
AcuI	CTGAAG	1 cut(s)	573
AfaI	GTAC	3 cut(s)	17, 225, 438
AfiI	CCNNNNNNNGG	4 cut(s)	75, 130, 355, 583
AflII	CTTAAG	1 cut(s)	425
AflIII	ACRYGT	1 cut(s)	660
AgsI	TTSAA	1 cut(s)	626
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	10, 82
AluI	AGCT	2 cut(s)	10, 82
Alw26I	GTCTC	2 cut(s)	443, 485
AlwNI	CAGNNNCTG	1 cut(s)	13
AoxI	GGCC	4 cut(s)	93, 121, 171, 534
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	4 cut(s)	7, 10, 40, 368
ApoI	RAATTY	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	635
AspS9I	GGNCC	3 cut(s)	121, 122, 535
AsuHPI	GGTGA	2 cut(s)	34, 145
AxyI	CCTNAGG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	125
BalI	TGGCCA	1 cut(s)	173
BanII	GRGCYC	1 cut(s)	125
BbsI	GAAGAC	1 cut(s)	143
BbvI	GCAGC	3 cut(s)	19, 27, 355
BccI	CCATC	4 cut(s)	124, 304, 355, 641
BcgI	CGANNNNNNTGC	2 cut(s)	624, 658
BcoDI	GTCTC	2 cut(s)	443, 485
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	5 cut(s)	8, 11, 41, 369, 516
BlsI	GCNGC	5 cut(s)	9, 12, 42, 370, 517
BmgT120I	GGNCC	3 cut(s)	121, 122, 535
BmiI	GGNNCC	1 cut(s)	123
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	644
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	143
BpmI	CTGGAG	1 cut(s)	497
BpuEI	CTTGAG	1 cut(s)	378
BsaAI	YACGTR	1 cut(s)	663
BsaBI	GATNNNNATC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	4 cut(s)	75, 130, 355, 583
Bse1I	ACTGG	2 cut(s)	96, 125
Bse21I	CCTNAGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	96
BseGI	GGATG	2 cut(s)	635, 652
BseJI	GATNNNNATC	1 cut(s)	50
BseLI	CCNNNNNNNGG	4 cut(s)	75, 130, 355, 583
BseMII	CTCAG	2 cut(s)	65, 341
BseNI	ACTGG	2 cut(s)	96, 125
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	3 cut(s)	19, 27, 355
BseYI	CCCAGC	1 cut(s)	146
Bsh1285I	CGRYCG	2 cut(s)	144, 577
BshFI	GGCC	4 cut(s)	95, 123, 173, 536
BsiEI	CGRYCG	2 cut(s)	144, 577
BslFI	GGGAC	2 cut(s)	52, 163
BslI	CCNNNNNNNGG	4 cut(s)	75, 130, 355, 583
BsmAI	GTCTC	2 cut(s)	443, 485
BsmBI	CGTCTC	1 cut(s)	485
BsmFI	GGGAC	2 cut(s)	52, 163
BsnI	GGCC	4 cut(s)	95, 123, 173, 536
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	125
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	2 cut(s)	51, 465
BspACI	CCGC	3 cut(s)	515, 577, 604
BspANI	GGCC	4 cut(s)	95, 123, 173, 536
BspCNI	CTCAG	2 cut(s)	66, 342
BspLI	GGNNCC	1 cut(s)	123
BspTI	CTTAAG	1 cut(s)	425
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	96, 125
BssECI	CCNNGG	1 cut(s)	96
BssMI	GATC	2 cut(s)	51, 465
BssT1I	CCWWGG	1 cut(s)	96
Bst4CI	ACNGT	3 cut(s)	22, 142, 154
BstAFI	CTTAAG	1 cut(s)	425
BstAUI	TGTACA	1 cut(s)	15
BstBAI	YACGTR	1 cut(s)	663
BstC8I	GCNNGC	2 cut(s)	581, 585
BstDEI	CTNAG	4 cut(s)	74, 350, 433, 539
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	635, 652
BstHHI	GCGC	1 cut(s)	635
BstKTI	GATC	2 cut(s)	54, 468
BstMAI	GTCTC	2 cut(s)	443, 485
BstMBI	GATC	2 cut(s)	51, 465
BstMCI	CGRYCG	2 cut(s)	144, 577
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	3 cut(s)	19, 27, 355
BstV2I	GAAGAC	1 cut(s)	143
BstXI	CCANNNNNNTGG	1 cut(s)	647
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	4 cut(s)	95, 123, 173, 536
BtgZI	GCGATG	1 cut(s)	374
BtsCI	GGATG	2 cut(s)	635, 652
BtsIMutI	CAGTG	2 cut(s)	132, 302
Cac8I	GCNNGC	2 cut(s)	581, 585
CaiI	CAGNNNCTG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	635
Cfr13I	GGNCC	3 cut(s)	121, 122, 535
Csp6I	GTAC	3 cut(s)	16, 224, 437
CviAII	CATG	2 cut(s)	250, 256
CviJI	RGCY	7 cut(s)	10, 82, 95, 123, 173, 368, 536
CviKI_1	RGCY	7 cut(s)	10, 82, 95, 123, 173, 368, 536
CviQI	GTAC	3 cut(s)	16, 224, 437
DdeI	CTNAG	4 cut(s)	74, 350, 433, 539
DpnI	GATC	2 cut(s)	53, 467
DpnII	GATC	2 cut(s)	51, 465
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	1 cut(s)	96
Eco24I	GRGCYC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	121, 535
EcoT14I	CCWWGG	1 cut(s)	96
EcoT38I	GRGCYC	1 cut(s)	125
ErhI	CCWWGG	1 cut(s)	96
Esp3I	CGTCTC	1 cut(s)	485
FaeI	CATG	2 cut(s)	253, 259
FaiI	YATR	6 cut(s)	251, 257, 281, 332, 489, 566
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	2 cut(s)	52, 163
FatI	CATG	2 cut(s)	249, 255
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	5 cut(s)	8, 11, 41, 369, 516
FokI	GGATG	2 cut(s)	622, 659
FriOI	GRGCYC	1 cut(s)	125
Fsp4HI	GCNGC	5 cut(s)	8, 11, 41, 369, 516
FspBI	CTAG	1 cut(s)	83
GlaI	GCGC	1 cut(s)	634
GluI	GCNGC	5 cut(s)	8, 11, 41, 369, 516
GsaI	CCCAGC	1 cut(s)	150
GsuI	CTGGAG	1 cut(s)	497
HaeIII	GGCC	4 cut(s)	95, 123, 173, 536
HhaI	GCGC	1 cut(s)	635
Hin1II	CATG	2 cut(s)	253, 259
Hin6I	GCGC	1 cut(s)	633
HinP1I	GCGC	1 cut(s)	633
HincII	GTYRAC	1 cut(s)	615
HindII	GTYRAC	1 cut(s)	615
HinfI	GANTC	4 cut(s)	215, 345, 479, 558
HpaI	GTTAAC	1 cut(s)	615
HphI	GGTGA	2 cut(s)	34, 145
Hpy166II	GTNNAC	5 cut(s)	18, 181, 193, 224, 615
Hpy188I	TCNGA	5 cut(s)	75, 418, 484, 553, 646
Hpy188III	TCNNGA	4 cut(s)	199, 349, 395, 476
Hpy8I	GTNNAC	5 cut(s)	18, 181, 193, 224, 615
HpyAV	CCTTC	4 cut(s)	112, 349, 499, 548
HpyCH4III	ACNGT	3 cut(s)	22, 142, 154
HpyCH4IV	ACGT	2 cut(s)	177, 662
HpyCH4V	TGCA	1 cut(s)	7
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
HpyF3I	CTNAG	4 cut(s)	74, 350, 433, 539
HpySE526I	ACGT	2 cut(s)	177, 662
Hsp92II	CATG	2 cut(s)	253, 259
HspAI	GCGC	1 cut(s)	633
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	51, 465
Lsp1109I	GCAGC	3 cut(s)	19, 27, 355
LweI	GCATC	1 cut(s)	644
MaeI	CTAG	1 cut(s)	83
MaeII	ACGT	2 cut(s)	177, 662
MaeIII	GTNAC	1 cut(s)	318
MalI	GATC	2 cut(s)	53, 467
MboI	GATC	2 cut(s)	51, 465
MboII	GAAGA	3 cut(s)	148, 158, 664
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	125
MlsI	TGGCCA	1 cut(s)	173
MluCI	AATT	2 cut(s)	271, 621
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	2 cut(s)	488, 552
MnlI	CCTC	9 cut(s)	69, 81, 107, 235, 345, 358, 450, 520, 526
Mox20I	TGGCCA	1 cut(s)	173
MscI	TGGCCA	1 cut(s)	173
MseI	TTAA	3 cut(s)	63, 426, 614
MslI	CAYNNNNRTG	3 cut(s)	254, 260, 645
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	1 cut(s)	10
MspCI	CTTAAG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	621
MwoI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
NdeII	GATC	2 cut(s)	51, 465
NlaIII	CATG	2 cut(s)	253, 259
NlaIV	GGNNCC	1 cut(s)	123
PfeI	GAWTC	2 cut(s)	215, 345
PkrI	GCNGC	5 cut(s)	9, 12, 42, 370, 517
PleI	GAGTC	2 cut(s)	487, 552
PpsI	GAGTC	2 cut(s)	487, 552
Ppu21I	YACGTR	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	123
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	3 cut(s)	121, 122, 535
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	10
RsaI	GTAC	3 cut(s)	17, 225, 438
RsaNI	GTAC	3 cut(s)	16, 224, 437
RseI	CAYNNNNRTG	3 cut(s)	254, 260, 645
SaqAI	TTAA	3 cut(s)	63, 426, 614
SatI	GCNGC	5 cut(s)	8, 11, 41, 369, 516
Sau3AI	GATC	2 cut(s)	51, 465
Sau96I	GGNCC	3 cut(s)	121, 122, 535
SchI	GAGTC	2 cut(s)	488, 552
SduI	GDGCHC	1 cut(s)	125
SetI	ASST	8 cut(s)	12, 84, 180, 246, 320, 434, 531, 665
SfaNI	GCATC	1 cut(s)	644
SmiMI	CAYNNNNRTG	3 cut(s)	254, 260, 645
SmlI	CTYRAG	2 cut(s)	393, 425
SmoI	CTYRAG	2 cut(s)	393, 425
Sse9I	AATT	2 cut(s)	271, 621
SsiI	CCGC	3 cut(s)	515, 577, 604
SspMI	CTAG	1 cut(s)	83
StyI	CCWWGG	1 cut(s)	96
TaaI	ACNGT	3 cut(s)	22, 142, 154
TaiI	ACGT	2 cut(s)	180, 665
TaqI	TCGA	3 cut(s)	267, 343, 468
TasI	AATT	2 cut(s)	271, 621
TatI	WGTACW	3 cut(s)	15, 223, 436
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	2 cut(s)	215, 345
Tru1I	TTAA	3 cut(s)	63, 426, 614
Tru9I	TTAA	3 cut(s)	63, 426, 614
TscAI	CASTG	2 cut(s)	132, 309
TseI	GCWGC	4 cut(s)	7, 10, 40, 368
TspDTI	ATGAA	3 cut(s)	122, 228, 272
TspGWI	ACGGA	2 cut(s)	251, 423
TspRI	CASTG	2 cut(s)	132, 309
Vha464I	CTTAAG	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	271
XmiI	GTMKAC	1 cut(s)	180
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.