FvH4_6g42950

B-cell receptor-associated protein 31-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003828
Physical Location & Seq
Reverse (-)
33329587 .. 33332082
2496 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g42950.t1

Sequence Viewer

Length: 657 bp
ATGATGCAGCTACTGTACACGGCGATCTTCAGCCAAATGGCGCTGATACTGACGCTGCTGTTCAAGTCGCCGCTGAGGAAGCTGGTGATATTGGGCCTCGACAAGCTCAAGCGAGGCAAAGGCCCAGTCGTCGTCAAGACTGTTGGGGGCACCGTCGCCGCTGTGCTCTGTGCCAACATCTACAATCTCAACGAGCTCAAGAGCCGCACCAACGAGGCCGGCATGCTCAACCCTACCGACGAGGTCCTCATGTCCATGAAATTGCTCGAGATTTCTCTCATGGGGTTTTTTCTGTTTCTTTCCCTGATGATTGATAGATTGCACCATTACATAAGAGAACTTCGATTTCTGAGGAAGGCAATGGAGGCTGCAAAGAAACAAAACCAGCCTACTCAAGAAGAGAAAAGCGAAGGCCACAAGACCTTGGTGCAAGAAAATGAGACATTGAGGGCAAAAGTTAAGAATCTGGAATCTGAACATGAGACCAAAGAAAAGAAGGCAAAGGCAACAGGAGCTGAGGTACAGGCCCTAAAGAAGCAATCTGAGGGACTCCTTCTGGAATATGATCGCCTGCTGGAAGAGAACCAACATCTTCGGGACCAGTTGAAATCAATTGATCGGAGCATGTCACACTCTGATGACAAAAAGAAGACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

219

Amino Acids

24.89

Weight (kDa)

9.44

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31_Bap29_C PF18035 152 - 205 4.3e-06 Bap31/Bap29 cytoplasmic coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 149
AciI CCGC 3 cut(s) 71, 159, 205
AcuI CTGAAG 1 cut(s) 13
AfaI GTAC 2 cut(s) 17, 522
AgsI TTSAA 2 cut(s) 64, 607
AluBI AGCT 5 cut(s) 10, 82, 106, 196, 515
AluI AGCT 5 cut(s) 10, 82, 106, 196, 515
Alw21I GWGCWC 2 cut(s) 168, 198
Alw26I GTCTC 2 cut(s) 434, 476
AlwNI CAGNNNCTG 2 cut(s) 13, 515
Ama87I CYCGRG 1 cut(s) 266
AoxI GGCC 5 cut(s) 94, 121, 216, 412, 525
ApeKI GCWGC 3 cut(s) 7, 55, 368
ArsI GACNNNNNNTTYG 2 cut(s) 111, 143
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 5 cut(s) 94, 122, 244, 526, 598
AsuHPI GGTGA 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 266
AvaII GGWCC 2 cut(s) 244, 598
BaeGI GKGCMC 1 cut(s) 152
BanI GGYRCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 198
Bbv12I GWGCWC 2 cut(s) 168, 198
BbvCI CCTCAGC 2 cut(s) 74, 516
BbvI GCAGC 3 cut(s) 19, 42, 355
BceAI ACGGC 1 cut(s) 36
BcoDI GTCTC 2 cut(s) 434, 476
BfoI RGCGCY 1 cut(s) 44
BisI GCNGC 6 cut(s) 8, 56, 71, 159, 205, 369
BlsI GCNGC 6 cut(s) 9, 57, 72, 160, 206, 370
Bme18I GGWCC 2 cut(s) 244, 598
BmeT110I CYCGRG 1 cut(s) 266
BmgT120I GGNCC 5 cut(s) 94, 122, 244, 526, 598
BmiI GGNNCC 2 cut(s) 151, 599
BmrI ACTGGG 1 cut(s) 119
BmuI ACTGGG 1 cut(s) 119
Bpu10I CCTNAGC 2 cut(s) 74, 516
BpuEI CTTGAG 3 cut(s) 92, 182, 378
BsaI GGTCTC 1 cut(s) 476
BsaJI CCNNGG 1 cut(s) 423
BsaXI ACNNNNNCTCC 2 cut(s) 504, 534
Bse118I RCCGGY 1 cut(s) 218
Bse1I ACTGG 2 cut(s) 125, 601
Bse3DI GCAATG 1 cut(s) 366
BseDI CCNNGG 1 cut(s) 423
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 4 cut(s) 65, 341, 507, 534
BseNI ACTGG 2 cut(s) 125, 601
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 3 cut(s) 19, 42, 355
BshFI GGCC 5 cut(s) 96, 123, 218, 414, 527
BshNI GGYRCC 1 cut(s) 149
BsiHKAI GWGCWC 2 cut(s) 168, 198
BsiHKCI CYCGRG 1 cut(s) 266
BsiSI CCGG 1 cut(s) 219
BslFI GGGAC 2 cut(s) 561, 611
BsmAI GTCTC 2 cut(s) 434, 476
BsmFI GGGAC 2 cut(s) 561, 611
BsnI GGCC 5 cut(s) 96, 123, 218, 414, 527
Bso31I GGTCTC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 266
Bsp1286I GDGCHC 3 cut(s) 152, 168, 198
Bsp1407I TGTACA 1 cut(s) 15
Bsp143I GATC 3 cut(s) 24, 565, 616
BspACI CCGC 3 cut(s) 71, 159, 205
BspANI GGCC 5 cut(s) 96, 123, 218, 414, 527
BspCNI CTCAG 4 cut(s) 66, 342, 508, 535
BspLI GGNNCC 2 cut(s) 151, 599
BspT107I GGYRCC 1 cut(s) 149
BspTNI GGTCTC 1 cut(s) 476
BsrDI GCAATG 1 cut(s) 366
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 15
BsrI ACTGG 2 cut(s) 125, 601
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 1 cut(s) 423
BssMI GATC 3 cut(s) 24, 565, 616
BssT1I CCWWGG 1 cut(s) 423
Bst4CI ACNGT 3 cut(s) 15, 142, 154
Bst6I CTCTTC 2 cut(s) 393, 573
BstAUI TGTACA 1 cut(s) 15
BstC8I GCNNGC 3 cut(s) 220, 224, 572
BstDEI CTNAG 4 cut(s) 74, 350, 516, 543
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 3 cut(s) 27, 568, 619
BstMAI GTCTC 2 cut(s) 434, 476
BstMBI GATC 3 cut(s) 24, 565, 616
BstMWI GCNNNNNNNGC 3 cut(s) 79, 365, 512
BstNSI RCATGY 2 cut(s) 226, 628
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 3 cut(s) 19, 42, 355
BsuRI GGCC 5 cut(s) 96, 123, 218, 414, 527
Cac8I GCNNGC 3 cut(s) 220, 224, 572
CaiI CAGNNNCTG 2 cut(s) 13, 515
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 218
Cfr13I GGNCC 5 cut(s) 94, 122, 244, 526, 598
CseI GACGC 1 cut(s) 61
Csp6I GTAC 2 cut(s) 16, 521
CviAII CATG 6 cut(s) 223, 250, 256, 280, 479, 625
CviQI GTAC 2 cut(s) 16, 521
DdeI CTNAG 4 cut(s) 74, 350, 516, 543
DpnI GATC 3 cut(s) 26, 567, 618
DpnII GATC 3 cut(s) 24, 565, 616
Eam1104I CTCTTC 2 cut(s) 393, 573
EarI CTCTTC 2 cut(s) 393, 573
Ecl136II GAGCTC 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 423
Eco24I GRGCYC 1 cut(s) 198
Eco31I GGTCTC 1 cut(s) 476
Eco47I GGWCC 2 cut(s) 244, 598
Eco53kI GAGCTC 1 cut(s) 196
Eco57I CTGAAG 1 cut(s) 13
Eco88I CYCGRG 1 cut(s) 266
EcoICRI GAGCTC 1 cut(s) 196
EcoO109I RGGNCCY 2 cut(s) 244, 526
EcoT14I CCWWGG 1 cut(s) 423
EcoT38I GRGCYC 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 423
FaeI CATG 6 cut(s) 226, 253, 259, 283, 482, 628
FaiI YATR 8 cut(s) 224, 251, 257, 281, 332, 480, 564, 626
FaqI GGGAC 2 cut(s) 561, 611
FatI CATG 6 cut(s) 222, 249, 255, 279, 478, 624
Fnu4HI GCNGC 6 cut(s) 8, 56, 71, 159, 205, 369
FriOI GRGCYC 1 cut(s) 198
Fsp4HI GCNGC 6 cut(s) 8, 56, 71, 159, 205, 369
GlaI GCGC 1 cut(s) 42
GluI GCNGC 6 cut(s) 8, 56, 71, 159, 205, 369
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 5 cut(s) 96, 123, 218, 414, 527
HapII CCGG 1 cut(s) 219
HgaI GACGC 1 cut(s) 61
HhaI GCGC 1 cut(s) 43
Hin1II CATG 6 cut(s) 226, 253, 259, 283, 482, 628
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HinfI GANTC 3 cut(s) 463, 470, 549
HpaII CCGG 1 cut(s) 219
HphI GGTGA 1 cut(s) 97
Hpy166II GTNNAC 1 cut(s) 18
Hpy188I TCNGA 5 cut(s) 351, 475, 544, 621, 637
Hpy188III TCNNGA 7 cut(s) 136, 199, 268, 395, 467, 557, 596
Hpy8I GTNNAC 1 cut(s) 18
Hpy99I CGWCG 3 cut(s) 134, 158, 242
HpyAV CCTTC 4 cut(s) 349, 404, 490, 563
HpyCH4III ACNGT 3 cut(s) 15, 142, 154
HpyCH4IV ACGT 1 cut(s) 653
HpyCH4V TGCA 4 cut(s) 7, 322, 371, 430
HpyF10VI GCNNNNNNNGC 3 cut(s) 79, 365, 512
HpyF3I CTNAG 4 cut(s) 74, 350, 516, 543
HpySE526I ACGT 1 cut(s) 653
Hsp92II CATG 6 cut(s) 226, 253, 259, 283, 482, 628
HspAI GCGC 1 cut(s) 41
KroI GCCGGC 1 cut(s) 218
KroNI GCCGGC 1 cut(s) 220
Kzo9I GATC 3 cut(s) 24, 565, 616
LmnI GCTCC 2 cut(s) 512, 621
Lsp1109I GCAGC 3 cut(s) 19, 42, 355
MaeII ACGT 1 cut(s) 653
MaeIII GTNAC 1 cut(s) 627
MalI GATC 3 cut(s) 26, 567, 618
MboI GATC 3 cut(s) 24, 565, 616
MboII GAAGA 4 cut(s) 19, 410, 584, 590
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 3 cut(s) 152, 168, 198
MluCI AATT 2 cut(s) 260, 612
MlyI GAGTC 1 cut(s) 543
MroNI GCCGGC 1 cut(s) 218
MseI TTAA 1 cut(s) 459
MslI CAYNNNNRTG 2 cut(s) 254, 636
MspA1I CMGCKG 2 cut(s) 73, 161
MspI CCGG 1 cut(s) 219
MunI CAATTG 1 cut(s) 612
MwoI GCNNNNNNNGC 3 cut(s) 79, 365, 512
NaeI GCCGGC 1 cut(s) 220
NdeII GATC 3 cut(s) 24, 565, 616
NgoMIV GCCGGC 1 cut(s) 218
NlaIII CATG 6 cut(s) 226, 253, 259, 283, 482, 628
NlaIV GGNNCC 2 cut(s) 151, 599
NmuCI GTSAC 1 cut(s) 627
NspI RCATGY 2 cut(s) 226, 628
PaeI GCATGC 1 cut(s) 226
PaeR7I CTCGAG 1 cut(s) 266
PdiI GCCGGC 1 cut(s) 220
PfeI GAWTC 2 cut(s) 463, 470
PflFI GACNNNGTC 1 cut(s) 242
PkrI GCNGC 6 cut(s) 9, 57, 72, 160, 206, 370
PleI GAGTC 1 cut(s) 543
PpsI GAGTC 1 cut(s) 543
PpuMI RGGWCCY 1 cut(s) 244
Psp124BI GAGCTC 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 244
PspN4I GGNNCC 2 cut(s) 151, 599
PspPI GGNCC 5 cut(s) 94, 122, 244, 526, 598
PspPPI RGGWCCY 1 cut(s) 244
PstNI CAGNNNCTG 2 cut(s) 13, 515
PsyI GACNNNGTC 1 cut(s) 242
RsaI GTAC 2 cut(s) 17, 522
RsaNI GTAC 2 cut(s) 16, 521
RseI CAYNNNNRTG 2 cut(s) 254, 636
SacI GAGCTC 1 cut(s) 198
SaqAI TTAA 1 cut(s) 459
SatI GCNGC 6 cut(s) 8, 56, 71, 159, 205, 369
Sau3AI GATC 3 cut(s) 24, 565, 616
Sau96I GGNCC 5 cut(s) 94, 122, 244, 526, 598
SchI GAGTC 1 cut(s) 543
SduI GDGCHC 3 cut(s) 152, 168, 198
SetI ASST 9 cut(s) 12, 84, 108, 198, 246, 425, 517, 522, 656
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 2 cut(s) 244, 598
SlaI CTCGAG 1 cut(s) 266
SmiMI CAYNNNNRTG 2 cut(s) 254, 636
SmlI CTYRAG 4 cut(s) 107, 197, 266, 393
SmoI CTYRAG 4 cut(s) 107, 197, 266, 393
SphI GCATGC 1 cut(s) 226
Sse9I AATT 2 cut(s) 260, 612
SsiI CCGC 3 cut(s) 71, 159, 205
SstI GAGCTC 1 cut(s) 198
StyI CCWWGG 1 cut(s) 423
TaaI ACNGT 3 cut(s) 15, 142, 154
TaiI ACGT 1 cut(s) 656
TaqI TCGA 3 cut(s) 99, 267, 343
TasI AATT 2 cut(s) 260, 612
TatI WGTACW 1 cut(s) 15
TauI GCSGC 3 cut(s) 73, 161, 207
TfiI GAWTC 2 cut(s) 463, 470
Tru1I TTAA 1 cut(s) 459
Tru9I TTAA 1 cut(s) 459
TseFI GTSAC 1 cut(s) 627
TseI GCWGC 3 cut(s) 7, 55, 368
Tsp45I GTSAC 1 cut(s) 627
TspDTI ATGAA 1 cut(s) 272
Tth111I GACNNNGTC 1 cut(s) 242
VpaK11BI GGWCC 2 cut(s) 244, 598
XceI RCATGY 2 cut(s) 226, 628
XhoI CTCGAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.