Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Reverse (-)

56363939 .. 56364777

Gene Structure 839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0397500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 309 bp

ATGATCTGGCCACTGACCACCCGCTCCACATCCGGGTCGCCGTCGAACGCCGATCGCCAAATACCCACACCTGCGTCACTGCTTGAGAAGAAAGAAGAGTCGTACCCAGCCCAGTCCGATGAAGATAGGCCAAAGCCGGGAGCCTCCAGATCCCAAGAGCCCGTCCGGCAACACCCGCCGGTCGTCGATGAGGCATGGAGCCACAATCAACGCGGGAGCGCCGCCGGACAGACTGCAGAATGTCCTGTGCTTTTTCCAAACCCTATTTCGCTCGCCTGTTTTCTCGGAGCAGTCGAACCCGATAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

102

Amino Acids

11.05

Weight (kDa)

5.27

Isoelectric Point (pI)

68.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	79
Acc36I	ACCTGC	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	24
AccII	CGCG	1 cut(s)	213
AciI	CCGC	4 cut(s)	22, 176, 213, 222
AclWI	GGATC	1 cut(s)	144
AcoI	YGGCCR	1 cut(s)	8
AfaI	GTAC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	33, 137
AjuI	GAANNNNNNNTTGG	2 cut(s)	250, 282
AlwI	GGATC	1 cut(s)	144
AoxI	GGCC	2 cut(s)	8, 128
AspLEI	GCGC	1 cut(s)	221
AsuC2I	CCSGG	2 cut(s)	34, 138
BalI	TGGCCA	1 cut(s)	10
BanII	GRGCYC	1 cut(s)	162
BceAI	ACGGC	1 cut(s)	25
BcnI	CCSGG	2 cut(s)	34, 138
BfmI	CTRYAG	1 cut(s)	234
BfoI	RGCGCY	1 cut(s)	222
BfuAI	ACCTGC	1 cut(s)	79
BglI	GCCNNNNNGGC	1 cut(s)	166
BisI	GCNGC	1 cut(s)	222
BlsI	GCNGC	1 cut(s)	223
Bme1390I	CCNGG	2 cut(s)	34, 138
BmiI	GGNNCC	2 cut(s)	142, 200
BmrFI	CCNGG	2 cut(s)	34, 138
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	104
BpuMI	CCSGG	2 cut(s)	34, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 137
Bse118I	RCCGGY	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	112
BseGI	GGATG	1 cut(s)	29
BseLI	CCNNNNNNNGG	2 cut(s)	33, 137
BseNI	ACTGG	1 cut(s)	112
BseYI	CCCAGC	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	213
Bsh1285I	CGRYCG	2 cut(s)	55, 183
BshFI	GGCC	2 cut(s)	10, 130
BsiEI	CGRYCG	2 cut(s)	55, 183
BsiSI	CCGG	5 cut(s)	33, 137, 166, 179, 225
BslI	CCNNNNNNNGG	2 cut(s)	33, 137
BsnI	GGCC	2 cut(s)	10, 130
Bsp1286I	GDGCHC	1 cut(s)	162
Bsp143I	GATC	3 cut(s)	3, 52, 149
BspACI	CCGC	4 cut(s)	22, 176, 213, 222
BspANI	GGCC	2 cut(s)	10, 130
BspFNI	CGCG	1 cut(s)	213
BspLI	GGNNCC	2 cut(s)	142, 200
BspMAI	CTGCAG	1 cut(s)	238
BspMI	ACCTGC	1 cut(s)	79
BspPI	GGATC	1 cut(s)	144
BsrBI	CCGCTC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	178
BssMI	GATC	3 cut(s)	3, 52, 149
Bst6I	CTCTTC	1 cut(s)	90
BstC8I	GCNNGC	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	29
BstFNI	CGCG	1 cut(s)	213
BstH2I	RGCGCY	1 cut(s)	222
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	6, 55, 152
BstMBI	GATC	3 cut(s)	3, 52, 149
BstMCI	CGRYCG	2 cut(s)	55, 183
BstMWI	GCNNNNNNNGC	2 cut(s)	166, 175
BstSCI	CCNGG	2 cut(s)	32, 136
BstSFI	CTRYAG	1 cut(s)	234
BstUI	CGCG	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	149
BstYI	RGATCY	1 cut(s)	149
BsuRI	GGCC	2 cut(s)	10, 130
BtsCI	GGATG	1 cut(s)	29
BtsI	GCAGTG	1 cut(s)	77
BtsIMutI	CAGTG	2 cut(s)	11, 77
BveI	ACCTGC	1 cut(s)	79
Cac8I	GCNNGC	1 cut(s)	273
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	178
CseI	GACGC	1 cut(s)	63
Csp6I	GTAC	1 cut(s)	103
CviAII	CATG	1 cut(s)	195
CviJI	RGCY	7 cut(s)	10, 110, 130, 136, 143, 160, 201
CviKI_1	RGCY	7 cut(s)	10, 110, 130, 136, 143, 160, 201
CviQI	GTAC	1 cut(s)	103
DpnI	GATC	3 cut(s)	5, 54, 151
DpnII	GATC	3 cut(s)	3, 52, 149
EaeI	YGGCCR	1 cut(s)	8
Eam1104I	CTCTTC	1 cut(s)	90
EarI	CTCTTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	162
EcoT38I	GRGCYC	1 cut(s)	162
FaeI	CATG	1 cut(s)	198
FaiI	YATR	1 cut(s)	196
FatI	CATG	1 cut(s)	194
FauI	CCCGC	3 cut(s)	29, 183, 206
Fnu4HI	GCNGC	1 cut(s)	222
FokI	GGATG	1 cut(s)	16
FriOI	GRGCYC	1 cut(s)	162
Fsp4HI	GCNGC	1 cut(s)	222
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	1 cut(s)	222
GsaI	CCCAGC	1 cut(s)	110
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	222
HaeIII	GGCC	2 cut(s)	10, 130
HapII	CCGG	5 cut(s)	33, 137, 166, 179, 225
HgaI	GACGC	1 cut(s)	63
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	1 cut(s)	198
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	5 cut(s)	33, 137, 166, 179, 225
Hpy188I	TCNGA	2 cut(s)	118, 287
Hpy188III	TCNNGA	1 cut(s)	147
Hpy99I	CGWCG	2 cut(s)	46, 188
HpyCH4V	TGCA	1 cut(s)	236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	166, 175
Hsp92II	CATG	1 cut(s)	198
HspAI	GCGC	1 cut(s)	219
Kzo9I	GATC	3 cut(s)	3, 52, 149
LmnI	GCTCC	5 cut(s)	29, 140, 198, 216, 287
MaeIII	GTNAC	1 cut(s)	75
MalI	GATC	3 cut(s)	5, 54, 151
MbiI	CCGCTC	1 cut(s)	24
MboI	GATC	3 cut(s)	3, 52, 149
MboII	GAAGA	3 cut(s)	100, 107, 134
MflI	RGATCY	1 cut(s)	149
MhlI	GDGCHC	1 cut(s)	162
MlsI	TGGCCA	1 cut(s)	10
MluNI	TGGCCA	1 cut(s)	10
MlyI	GAGTC	1 cut(s)	107
MnlI	CCTC	2 cut(s)	154, 184
Mox20I	TGGCCA	1 cut(s)	10
MscI	TGGCCA	1 cut(s)	10
Msp20I	TGGCCA	1 cut(s)	10
MspI	CCGG	5 cut(s)	33, 137, 166, 179, 225
MspR9I	CCNGG	2 cut(s)	34, 138
MvnI	CGCG	1 cut(s)	213
MwoI	GCNNNNNNNGC	2 cut(s)	166, 175
NciI	CCSGG	2 cut(s)	34, 138
NdeII	GATC	3 cut(s)	3, 52, 149
NlaIII	CATG	1 cut(s)	198
NlaIV	GGNNCC	2 cut(s)	142, 200
NmuCI	GTSAC	1 cut(s)	75
PaqCI	CACCTGC	1 cut(s)	79
PcsI	WCGNNNNNNNCGW	1 cut(s)	291
PkrI	GCNGC	1 cut(s)	223
Ple19I	CGATCG	1 cut(s)	55
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
PspFI	CCCAGC	1 cut(s)	106
PspN4I	GGNNCC	2 cut(s)	142, 200
PstI	CTGCAG	1 cut(s)	238
PsuI	RGATCY	1 cut(s)	149
PvuI	CGATCG	1 cut(s)	55
RsaI	GTAC	1 cut(s)	104
RsaNI	GTAC	1 cut(s)	103
SatI	GCNGC	1 cut(s)	222
Sau3AI	GATC	3 cut(s)	3, 52, 149
SchI	GAGTC	1 cut(s)	107
ScrFI	CCNGG	2 cut(s)	34, 138
SduI	GDGCHC	1 cut(s)	162
SetI	ASST	1 cut(s)	73
SfcI	CTRYAG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
SsiI	CCGC	4 cut(s)	22, 176, 213, 222
StyD4I	CCNGG	2 cut(s)	32, 136
TaqI	TCGA	3 cut(s)	44, 186, 294
TauI	GCSGC	1 cut(s)	224
TscAI	CASTG	2 cut(s)	18, 84
TseFI	GTSAC	1 cut(s)	75
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	135
TspRI	CASTG	2 cut(s)	18, 84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.