Rh5DG022100

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0003828
Physical Location & Seq
Reverse (-)
1583495 .. 1586289
2795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG022100.1

Sequence Viewer

Length: 666 bp
ATGATTCAGCTACTGTTCATAGTGATCATCTCAGAGATGGCTCTGATTCTGGCGTGTTTGTTCAAGACCCCACTGAGGAAGCTTGTGATAATGGGCCTGGATCAGATCAAGCGAGGACGTGGGCCTGTGGTGGTGAAGACGGTGGCGGGAACGGTGTTTGTGGTGTTGTTGACCAGCCTCTACGGTGTGATGACGATCAAGAAGAGTGGGATAACTGGAACCGATGCGGTAGGGATTCTTAGTCCCACGGATCAGATCCTCATGTTCAAGCACCTCCTTGAAGTCACTCTAATGGGGTTCTTCTTATTCCTTGTCCTTATGATAGACAGAATACACCACTACATTAGAGAGCTTCGTGTACGAAGAAAGACCATGGAGGCCATACAGAAACAGAGCCGAGGATCTGAGGATGGGAAAGCTGGTGGTATGGACGAGATCAAGGCCTTGGAGAATGAGATGAATACATCGCGCTCAAGACTCAAACAACTAGAATCTGACATTGAGACAAAGACGAAAGAAGCTCATGCTGCAGAAGCCAATGTTGTTACTCTAAGGAAACAATCTGAAGGCTTCCTTCTTGAGTATGATCGTTTAGTTGAAGAAAACCAAAATTTAATGAACCAATTGCAGTCGTTGGCACATTCTGGTAGCAAGAAAGATTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

221

Amino Acids

24.83

Weight (kDa)

9.3

Isoelectric Point (pI)

43.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Bap31_Bap29_C PF18035 161 - 220 3.6e-06 Bap31/Bap29 cytoplasmic coiled-coil domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 469
AciI CCGC 2 cut(s) 146, 227
AclWI GGATC 4 cut(s) 108, 250, 258, 409
AcsI RAATTY 1 cut(s) 610
AcuI CTGAAG 1 cut(s) 585
AfaI GTAC 1 cut(s) 360
AfiI CCNNNNNNNGG 1 cut(s) 75
AgsI TTSAA 4 cut(s) 64, 268, 281, 599
AjiI CACGTC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 5 cut(s) 10, 82, 352, 419, 521
AluI AGCT 5 cut(s) 10, 82, 352, 419, 521
Alw26I GTCTC 1 cut(s) 497
AlwI GGATC 4 cut(s) 108, 250, 258, 409
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 4 cut(s) 94, 122, 378, 441
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 1 cut(s) 610
AspLEI GCGC 1 cut(s) 471
AspS9I GGNCC 2 cut(s) 94, 122
AsuHPI GGTGA 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 31, 404
BciT130I CCWGG 1 cut(s) 98
BclI TGATCA 1 cut(s) 24
BcoDI GTCTC 1 cut(s) 497
BfaI CTAG 1 cut(s) 488
BfmI CTRYAG 1 cut(s) 528
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme1390I CCNGG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 2 cut(s) 94, 122
BmiI GGNNCC 1 cut(s) 220
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 214
BpiI GAAGAC 1 cut(s) 143
BpuEI CTTGAG 2 cut(s) 457, 599
BsaBI GATNNNNATC 1 cut(s) 194
BsaJI CCNNGG 4 cut(s) 246, 372, 397, 444
Bsc4I CCNNNNNNNGG 1 cut(s) 75
Bse1I ACTGG 1 cut(s) 220
Bse8I GATNNNNATC 1 cut(s) 194
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 4 cut(s) 246, 372, 397, 444
BseGI GGATG 1 cut(s) 415
BseJI GATNNNNATC 1 cut(s) 194
BseLI CCNNNNNNNGG 1 cut(s) 75
BseMII CTCAG 3 cut(s) 45, 65, 396
BseNI ACTGG 1 cut(s) 220
BseXI GCAGC 1 cut(s) 514
Bsh1236I CGCG 1 cut(s) 469
BshFI GGCC 4 cut(s) 96, 124, 380, 443
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 497
BsmFI GGGAC 1 cut(s) 228
BsnI GGCC 4 cut(s) 96, 124, 380, 443
Bsp143I GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
Bsp19I CCATGG 1 cut(s) 372
BspACI CCGC 2 cut(s) 146, 227
BspANI GGCC 4 cut(s) 96, 124, 380, 443
BspCNI CTCAG 3 cut(s) 44, 66, 397
BspFNI CGCG 1 cut(s) 469
BspLI GGNNCC 1 cut(s) 220
BspMAI CTGCAG 1 cut(s) 532
BspPI GGATC 4 cut(s) 108, 250, 258, 409
BsrI ACTGG 1 cut(s) 220
BssECI CCNNGG 4 cut(s) 246, 372, 397, 444
BssMI GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
BssT1I CCWWGG 2 cut(s) 372, 444
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 4 cut(s) 15, 142, 154, 185
Bst6I CTCTTC 1 cut(s) 197
BstDEI CTNAG 5 cut(s) 31, 74, 239, 405, 551
BstDSI CCRYGG 2 cut(s) 246, 372
BstF5I GGATG 1 cut(s) 415
BstFNI CGCG 1 cut(s) 469
BstHHI GCGC 1 cut(s) 471
BstKTI GATC 9 cut(s) 27, 103, 108, 198, 253, 258, 404, 438, 589
BstMAI GTCTC 1 cut(s) 497
BstMBI GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
BstMWI GCNNNNNNNGC 2 cut(s) 527, 533
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 528
BstUI CGCG 1 cut(s) 469
BstV1I GCAGC 1 cut(s) 514
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 2 cut(s) 255, 401
BstYI RGATCY 2 cut(s) 255, 401
BsuRI GGCC 4 cut(s) 96, 124, 380, 443
BtgI CCRYGG 2 cut(s) 246, 372
BtgZI GCGATG 1 cut(s) 450
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 415
BtsIMutI CAGTG 1 cut(s) 71
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 471
Cfr13I GGNCC 2 cut(s) 94, 122
Csp6I GTAC 1 cut(s) 359
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 3 cut(s) 262, 373, 524
CviQI GTAC 1 cut(s) 359
DdeI CTNAG 5 cut(s) 31, 74, 239, 405, 551
DpnI GATC 9 cut(s) 26, 102, 107, 197, 252, 257, 403, 437, 588
DpnII GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Eco130I CCWWGG 2 cut(s) 372, 444
Eco147I AGGCCT 1 cut(s) 443
Eco57I CTGAAG 1 cut(s) 585
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 372, 444
ErhI CCWWGG 2 cut(s) 372, 444
FaeI CATG 3 cut(s) 265, 376, 527
FaiI YATR 9 cut(s) 20, 263, 320, 374, 383, 428, 525, 585, 664
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 228
FatI CATG 3 cut(s) 261, 372, 523
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 1 cut(s) 422
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 1 cut(s) 488
GlaI GCGC 1 cut(s) 470
GluI GCNGC 1 cut(s) 528
HaeIII GGCC 4 cut(s) 96, 124, 380, 443
HhaI GCGC 1 cut(s) 471
Hin1II CATG 3 cut(s) 265, 376, 527
Hin6I GCGC 1 cut(s) 469
HinP1I GCGC 1 cut(s) 469
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HindIII AAGCTT 1 cut(s) 80
HinfI GANTC 6 cut(s) 4, 46, 235, 477, 491, 659
HphI GGTGA 1 cut(s) 145
Hpy166II GTNNAC 2 cut(s) 171, 359
Hpy188I TCNGA 7 cut(s) 34, 45, 105, 255, 406, 496, 565
Hpy188III TCNNGA 4 cut(s) 64, 199, 474, 578
Hpy8I GTNNAC 2 cut(s) 171, 359
HpyAV CCTTC 2 cut(s) 560, 584
HpyCH4III ACNGT 4 cut(s) 15, 142, 154, 185
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 2 cut(s) 530, 628
HpyF10VI GCNNNNNNNGC 2 cut(s) 527, 533
HpyF3I CTNAG 5 cut(s) 31, 74, 239, 405, 551
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 3 cut(s) 265, 376, 527
HspAI GCGC 1 cut(s) 469
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
LpnPI CCDG 8 cut(s) 35, 83, 110, 138, 187, 201, 405, 630
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 1 cut(s) 214
MaeI CTAG 1 cut(s) 488
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 2 cut(s) 283, 544
MalI GATC 9 cut(s) 26, 102, 107, 197, 252, 257, 403, 437, 588
MboI GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
MboII GAAGA 5 cut(s) 148, 214, 292, 375, 611
MfeI CAATTG 1 cut(s) 623
MflI RGATCY 2 cut(s) 255, 401
MluCI AATT 2 cut(s) 610, 623
MlyI GAGTC 1 cut(s) 471
MnlI CCTC 8 cut(s) 69, 107, 188, 269, 284, 370, 392, 400
MseI TTAA 1 cut(s) 614
MslI CAYNNNNRTG 1 cut(s) 290
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 623
MvaI CCWGG 1 cut(s) 98
MvnI CGCG 1 cut(s) 469
MwoI GCNNNNNNNGC 2 cut(s) 527, 533
NcoI CCATGG 1 cut(s) 372
NdeII GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
NlaIII CATG 3 cut(s) 265, 376, 527
NlaIV GGNNCC 1 cut(s) 220
NmeAIII GCCGAG 1 cut(s) 422
NmuCI GTSAC 1 cut(s) 283
PceI AGGCCT 1 cut(s) 443
PfeI GAWTC 5 cut(s) 4, 46, 235, 491, 659
PkrI GCNGC 1 cut(s) 529
PleI GAGTC 1 cut(s) 471
PpsI GAGTC 1 cut(s) 471
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 220
PspPI GGNCC 2 cut(s) 94, 122
PstI CTGCAG 1 cut(s) 532
PstNI CAGNNNCTG 1 cut(s) 13
PsuI RGATCY 2 cut(s) 255, 401
RsaI GTAC 1 cut(s) 360
RsaNI GTAC 1 cut(s) 359
RseI CAYNNNNRTG 1 cut(s) 290
SaqAI TTAA 1 cut(s) 614
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 9 cut(s) 24, 100, 105, 195, 250, 255, 401, 435, 586
Sau96I GGNCC 2 cut(s) 94, 122
SchI GAGTC 1 cut(s) 471
ScrFI CCNGG 1 cut(s) 98
SetI ASST 7 cut(s) 12, 84, 121, 276, 354, 421, 523
SfaNI GCATC 1 cut(s) 214
SfcI CTRYAG 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 290
SmlI CTYRAG 2 cut(s) 472, 578
SmoI CTYRAG 2 cut(s) 472, 578
Sse9I AATT 2 cut(s) 610, 623
SseBI AGGCCT 1 cut(s) 443
SsiI CCGC 2 cut(s) 146, 227
SspMI CTAG 1 cut(s) 488
StuI AGGCCT 1 cut(s) 443
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 372, 444
TaaI ACNGT 4 cut(s) 15, 142, 154, 185
TaiI ACGT 1 cut(s) 121
TasI AATT 2 cut(s) 610, 623
TfiI GAWTC 5 cut(s) 4, 46, 235, 491, 659
Tru1I TTAA 1 cut(s) 614
Tru9I TTAA 1 cut(s) 614
TscAI CASTG 1 cut(s) 78
TseFI GTSAC 1 cut(s) 283
TseI GCWGC 1 cut(s) 527
Tsp45I GTSAC 1 cut(s) 283
TspDTI ATGAA 4 cut(s) 7, 473, 632, 651
TspGWI ACGGA 1 cut(s) 263
TspRI CASTG 1 cut(s) 78
XapI RAATTY 1 cut(s) 610
XspI CTAG 1 cut(s) 488
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.