Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Forward (+)

28394732 .. 28396464

Gene Structure 1733 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g27450.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGGAGGCTCCCTATTTCTTGCTCTTATGATAGACAGACTACACCACTACATTAGAGAACTTCGTATACGAAGAAAGGGCATGGAAGCCGTTAAGAAACAGAACAGAGGATCTGAGGATGGAAAATCTAGCAGTTTGGATAAGATGAAAGTCTTGGAGAATGAGATGGCTACATTGCATACGAGGCTTAAACAACTAGAATCTGAAATGGAGACAAAGACAAAAGATGTTCATACTGCAGAGTCCAGCGTCCTTGCTCTAAGAAAACAATCGGAAGGGTTTCTTCTCGAGTATGATCGTTTACTTGAAGAAAACCAAAACTTCAAGAATCGGTTGCAGTCATTTGACCGGAAAATGTCACGTTCAGGTAGCAAGAAAGATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

129

Amino Acids

14.9

Weight (kDa)

9.65

Isoelectric Point (pI)

61.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	67
AclWI	GGATC	1 cut(s)	118
AgsI	TTSAA	2 cut(s)	308, 325
Alw26I	GTCTC	1 cut(s)	206
AlwI	GGATC	1 cut(s)	118
Ama87I	CYCGRG	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	279
AvaI	CYCGRG	1 cut(s)	287
BccI	CCATC	2 cut(s)	113, 160
BceAI	ACGGC	1 cut(s)	74
BcoDI	GTCTC	1 cut(s)	206
BfaI	CTAG	2 cut(s)	129, 197
BfmI	CTRYAG	1 cut(s)	237
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	10
BsaWI	WCCGGW	1 cut(s)	348
Bse3DI	GCAATG	1 cut(s)	173
BseGI	GGATG	1 cut(s)	124
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	287
BsiSI	CCGG	1 cut(s)	349
BsmAI	GTCTC	1 cut(s)	206
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	110, 295
BspCNI	CTCAG	1 cut(s)	106
BspLI	GGNNCC	1 cut(s)	10
BspMAI	CTGCAG	1 cut(s)	241
BspPI	GGATC	1 cut(s)	118
BsrDI	GCAATG	1 cut(s)	173
BssMI	GATC	2 cut(s)	110, 295
BssNAI	GTATAC	1 cut(s)	68
Bst1107I	GTATAC	1 cut(s)	68
BstDEI	CTNAG	2 cut(s)	114, 260
BstF5I	GGATG	1 cut(s)	124
BstKTI	GATC	2 cut(s)	113, 298
BstMAI	GTCTC	1 cut(s)	206
BstMBI	GATC	2 cut(s)	110, 295
BstMWI	GCNNNNNNNGC	1 cut(s)	184
BstSFI	CTRYAG	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	110
BstYI	RGATCY	1 cut(s)	110
BstZ17I	GTATAC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	124
CseI	GACGC	1 cut(s)	238
CviAII	CATG	1 cut(s)	82
CviJI	RGCY	4 cut(s)	9, 89, 170, 187
CviKI_1	RGCY	4 cut(s)	9, 89, 170, 187
DdeI	CTNAG	2 cut(s)	114, 260
DpnI	GATC	2 cut(s)	112, 297
DpnII	GATC	2 cut(s)	110, 295
Eco88I	CYCGRG	1 cut(s)	287
FaeI	CATG	1 cut(s)	85
FaiI	YATR	7 cut(s)	29, 68, 83, 180, 234, 294, 385
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	1 cut(s)	81
FblI	GTMKAC	1 cut(s)	67
FokI	GGATG	1 cut(s)	131
FspBI	CTAG	2 cut(s)	129, 197
HapII	CCGG	1 cut(s)	349
HgaI	GACGC	1 cut(s)	238
Hin1II	CATG	1 cut(s)	85
HinfI	GANTC	4 cut(s)	200, 242, 328, 380
HpaII	CCGG	1 cut(s)	349
Hpy166II	GTNNAC	2 cut(s)	68, 302
Hpy188I	TCNGA	3 cut(s)	115, 205, 274
Hpy188III	TCNNGA	2 cut(s)	287, 325
Hpy8I	GTNNAC	2 cut(s)	68, 302
HpyAV	CCTTC	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	3 cut(s)	178, 239, 337
HpyF10VI	GCNNNNNNNGC	1 cut(s)	184
HpyF3I	CTNAG	2 cut(s)	114, 260
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	1 cut(s)	85
Kzo9I	GATC	2 cut(s)	110, 295
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	3 cut(s)	259, 351, 362
MaeI	CTAG	2 cut(s)	129, 197
MaeII	ACGT	1 cut(s)	361
MaeIII	GTNAC	1 cut(s)	357
MalI	GATC	2 cut(s)	112, 297
MboI	GATC	2 cut(s)	110, 295
MboII	GAAGA	3 cut(s)	84, 275, 320
MflI	RGATCY	1 cut(s)	110
MlyI	GAGTC	1 cut(s)	251
MnlI	CCTC	3 cut(s)	101, 109, 177
MroXI	GAANNNNTTC	1 cut(s)	279
MseI	TTAA	2 cut(s)	93, 189
MspI	CCGG	1 cut(s)	349
MwoI	GCNNNNNNNGC	1 cut(s)	184
NdeII	GATC	2 cut(s)	110, 295
NlaIII	CATG	1 cut(s)	85
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	357
PaeR7I	CTCGAG	1 cut(s)	287
PdmI	GAANNNNTTC	1 cut(s)	279
PfeI	GAWTC	3 cut(s)	200, 328, 380
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	10
PsrI	GAACNNNNNNTAC	2 cut(s)	51, 83
PstI	CTGCAG	1 cut(s)	241
PsuI	RGATCY	1 cut(s)	110
SaqAI	TTAA	2 cut(s)	93, 189
Sau3AI	GATC	2 cut(s)	110, 295
SchI	GAGTC	1 cut(s)	251
SetI	ASST	2 cut(s)	364, 370
SfcI	CTRYAG	1 cut(s)	237
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmlI	CTYRAG	1 cut(s)	287
SmoI	CTYRAG	1 cut(s)	287
SspMI	CTAG	2 cut(s)	129, 197
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	1 cut(s)	288
TfiI	GAWTC	3 cut(s)	200, 328, 380
Tru1I	TTAA	2 cut(s)	93, 189
Tru9I	TTAA	2 cut(s)	93, 189
TseFI	GTSAC	1 cut(s)	357
Tsp45I	GTSAC	1 cut(s)	357
TspDTI	ATGAA	3 cut(s)	161, 221, 372
XhoI	CTCGAG	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	67
XmnI	GAANNNNTTC	1 cut(s)	279
XspI	CTAG	2 cut(s)	129, 197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.