FvH4_3g01750

B-cell receptor-associated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0003828
Physical Location & Seq
Reverse (-)
904187 .. 906850
2664 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g01750.t1

Sequence Viewer

Length: 669 bp
ATGATCCAGCTATTGTTCATAGTGATAATCTCAGAGATGGCTCTGATTCTGGCGTGTTTGTTCAGAACACCATTGAGGAAGCTGGTGATAGTGGGCCTGGATCAGATCAAGCGGGGACGTGGACCTGTGGTGGTGAAGACGGCGGCGGGAACGGTGTTTGTGGTGTTGTTGACCAGCCTCTACGGTATGGTGAAGATCAAGAGGAGTGGAGCCGATGCAGTTGGGATTCTTAGTCCCACGGATCAGATCCTCATGTTTAAGCATCTACTTGAAGTCACCCTAATGGGGTTCTTCCTATTCCTTGTTCTTATGATAGACAGAATACATCACTACATTAGAGAGCTTCGTGTACGAAGAAAGACCATGGAGGCTATAAAGAAGCAGAACCGAGGATCTGAGGATGGAAAAGCTGGTGGTTTGGACGAGGTCAAGGCCTTGGAGAATGAGATGTCTACATCACGCTTAAGAATCAAACAACTAGAATCTAACATTGAGACAACGACGAAAGAAGCTCATGCTGCAGAAGCCAGTGTTGATGCTCTGAGGAAACAATCTGAAGGCTTCCTTCTTGAGTATGATCGGTTACTTGAAGAAAATCAAAACTTAAAAAACCAATTGCAGTCATTGGACCGGAAAGTGTCACATTCAGGTAGCAAGAAAGATCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000139 GO:0003674 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0005795 GO:0005811 GO:0005886 GO:0005887 GO:0006810 GO:0006873 GO:0006874 GO:0006875 GO:0006888 GO:0007154 GO:0007165 GO:0007204 GO:0007276 GO:0007283 GO:0008104 GO:0008150 GO:0009893 GO:0009894 GO:0009896 GO:0009966 GO:0009967 GO:0009987 GO:0010604 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0010950 GO:0010952 GO:0012505 GO:0016020 GO:0016021 GO:0016192 GO:0019222 GO:0019722 GO:0019725 GO:0019932 GO:0019953 GO:0022414 GO:0023051 GO:0023052 GO:0023056 GO:0030003 GO:0030135 GO:0030136 GO:0030162 GO:0031090 GO:0031224 GO:0031226 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031410 GO:0031982 GO:0031984 GO:0031985 GO:0032268 GO:0032270 GO:0032386 GO:0032388 GO:0032434 GO:0032436 GO:0032469 GO:0032471 GO:0032501 GO:0032504 GO:0032580 GO:0032879 GO:0032880 GO:0033036 GO:0033157 GO:0033365 GO:0034613 GO:0035556 GO:0035584 GO:0042175 GO:0042176 GO:0042287 GO:0042288 GO:0042592 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043085 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043280 GO:0043281 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0044703 GO:0044877 GO:0045732 GO:0045862 GO:0046907 GO:0048193 GO:0048232 GO:0048471 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048609 GO:0048878 GO:0050789 GO:0050790 GO:0050794 GO:0050801 GO:0050896 GO:0051049 GO:0051050 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051246 GO:0051247 GO:0051336 GO:0051345 GO:0051480 GO:0051560 GO:0051561 GO:0051641 GO:0051649 GO:0051704 GO:0051716 GO:0052547 GO:0052548 GO:0055065 GO:0055074 GO:0055080 GO:0055082 GO:0060255 GO:0060341 GO:0061136 GO:0065007 GO:0065008 GO:0065009 GO:0070201 GO:0070727 GO:0070861 GO:0070863 GO:0070972 GO:0070973 GO:0071944 GO:0072503 GO:0072507 GO:0080090 GO:0080134 GO:0080135 GO:0090087 GO:0090316 GO:0097038 GO:0097708 GO:0098588 GO:0098771 GO:0098791 GO:0098827 GO:1901800 GO:1902531 GO:1902533 GO:1903050 GO:1903052 GO:1903069 GO:1903071 GO:1903362 GO:1903364 GO:1903827 GO:1903829 GO:1904152 GO:1904154 GO:1904292 GO:1904294 GO:1904951 GO:1905897 GO:1905898 GO:2000058 GO:2000060 GO:2000116 GO:2001056 GO:2001233 GO:2001235 GO:2001242 GO:2001244
KEGG Pathways
Metabolic & Signaling
ko04141 ko05165 map04141 map05165
Pfam Domains
Protein Families
Bap31

Protein Analysis

223

Amino Acids

25.01

Weight (kDa)

9.62

Isoelectric Point (pI)

42.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
APG6_N PF17675 119 - 216 1e-05 Apg6 coiled-coil region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 452
AciI CCGC 3 cut(s) 112, 143, 146
AclWI GGATC 5 cut(s) 108, 241, 249, 400, 656
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 1 cut(s) 351
AfiI CCNNNNNNNGG 1 cut(s) 285
AflII CTTAAG 1 cut(s) 463
AgsI TTSAA 2 cut(s) 272, 590
AjiI CACGTC 1 cut(s) 119
AjnI CCWGG 1 cut(s) 96
AluBI AGCT 5 cut(s) 10, 82, 343, 410, 512
AluI AGCT 5 cut(s) 10, 82, 343, 410, 512
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 5 cut(s) 108, 241, 249, 400, 656
AoxI GGCC 2 cut(s) 94, 432
ApeKI GCWGC 1 cut(s) 518
AspS9I GGNCC 3 cut(s) 94, 122, 628
AsuHPI GGTGA 4 cut(s) 97, 145, 202, 268
AvaII GGWCC 2 cut(s) 122, 628
BbsI GAAGAC 1 cut(s) 143
BbvI GCAGC 1 cut(s) 505
BccI CCATC 2 cut(s) 31, 395
BceAI ACGGC 1 cut(s) 156
BciT130I CCWGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 488
BfaI CTAG 1 cut(s) 479
BfmI CTRYAG 1 cut(s) 519
BfrI CTTAAG 1 cut(s) 463
BisI GCNGC 2 cut(s) 144, 519
BlsI GCNGC 2 cut(s) 145, 520
Bme1390I CCNGG 1 cut(s) 98
Bme18I GGWCC 2 cut(s) 122, 628
BmgBI CACGTC 1 cut(s) 119
BmgT120I GGNCC 3 cut(s) 94, 122, 628
BmiI GGNNCC 1 cut(s) 211
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 3 cut(s) 205, 271, 526
BpiI GAAGAC 1 cut(s) 143
BpuEI CTTGAG 1 cut(s) 590
BsaJI CCNNGG 4 cut(s) 237, 363, 388, 435
BsaWI WCCGGW 1 cut(s) 630
Bsc4I CCNNNNNNNGG 1 cut(s) 285
Bse1I ACTGG 1 cut(s) 528
BseBI CCWGG 1 cut(s) 98
BseDI CCNNGG 4 cut(s) 237, 363, 388, 435
BseGI GGATG 1 cut(s) 406
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 3 cut(s) 45, 387, 533
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 1 cut(s) 217
BseXI GCAGC 1 cut(s) 505
BshFI GGCC 2 cut(s) 96, 434
BsiSI CCGG 1 cut(s) 631
BslFI GGGAC 2 cut(s) 129, 219
BslI CCNNNNNNNGG 1 cut(s) 285
BsmAI GTCTC 1 cut(s) 488
BsmFI GGGAC 2 cut(s) 129, 219
BsnI GGCC 2 cut(s) 96, 434
Bsp143I GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
Bsp19I CCATGG 1 cut(s) 363
BspACI CCGC 3 cut(s) 112, 143, 146
BspANI GGCC 2 cut(s) 96, 434
BspCNI CTCAG 3 cut(s) 44, 388, 534
BspLI GGNNCC 1 cut(s) 211
BspMAI CTGCAG 1 cut(s) 523
BspPI GGATC 5 cut(s) 108, 241, 249, 400, 656
BspTI CTTAAG 1 cut(s) 463
BsrI ACTGG 1 cut(s) 528
BssECI CCNNGG 4 cut(s) 237, 363, 388, 435
BssMI GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
BssT1I CCWWGG 2 cut(s) 363, 435
Bst2UI CCWGG 1 cut(s) 98
Bst4CI ACNGT 2 cut(s) 154, 185
BstAFI CTTAAG 1 cut(s) 463
BstDEI CTNAG 4 cut(s) 31, 230, 396, 542
BstDSI CCRYGG 2 cut(s) 237, 363
BstF5I GGATG 1 cut(s) 406
BstKTI GATC 9 cut(s) 6, 103, 108, 198, 244, 249, 395, 580, 664
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
BstMWI GCNNNNNNNGC 2 cut(s) 518, 524
BstNI CCWGG 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 96
BstSFI CTRYAG 1 cut(s) 519
BstV1I GCAGC 1 cut(s) 505
BstV2I GAAGAC 1 cut(s) 143
BstX2I RGATCY 3 cut(s) 246, 392, 661
BstYI RGATCY 3 cut(s) 246, 392, 661
BsuRI GGCC 2 cut(s) 96, 434
BtgI CCRYGG 2 cut(s) 237, 363
BtrI CACGTC 1 cut(s) 119
BtsCI GGATG 1 cut(s) 406
BtsIMutI CAGTG 1 cut(s) 535
Cfr13I GGNCC 3 cut(s) 94, 122, 628
Csp6I GTAC 1 cut(s) 350
CspCI CAANNNNNGTGG 2 cut(s) 187, 222
CviAII CATG 3 cut(s) 253, 364, 515
CviQI GTAC 1 cut(s) 350
DdeI CTNAG 4 cut(s) 31, 230, 396, 542
DpnI GATC 9 cut(s) 5, 102, 107, 197, 243, 248, 394, 579, 663
DpnII GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
Eco130I CCWWGG 2 cut(s) 363, 435
Eco147I AGGCCT 1 cut(s) 434
Eco47I GGWCC 2 cut(s) 122, 628
Eco57I CTGAAG 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 363, 435
ErhI CCWWGG 2 cut(s) 363, 435
FaeI CATG 3 cut(s) 256, 367, 518
FaiI YATR 9 cut(s) 20, 188, 254, 311, 365, 374, 516, 576, 667
FalI AAGNNNNNCTT 2 cut(s) 549, 581
FaqI GGGAC 2 cut(s) 129, 219
FatI CATG 3 cut(s) 252, 363, 514
FauI CCCGC 2 cut(s) 105, 139
FblI GTMKAC 1 cut(s) 452
Fnu4HI GCNGC 2 cut(s) 144, 519
FokI GGATG 1 cut(s) 413
Fsp4HI GCNGC 2 cut(s) 144, 519
FspBI CTAG 1 cut(s) 479
GluI GCNGC 2 cut(s) 144, 519
HaeIII GGCC 2 cut(s) 96, 434
HapII CCGG 1 cut(s) 631
Hin1II CATG 3 cut(s) 256, 367, 518
HincII GTYRAC 1 cut(s) 171
HindII GTYRAC 1 cut(s) 171
HinfI GANTC 4 cut(s) 46, 226, 468, 482
HpaII CCGG 1 cut(s) 631
HphI GGTGA 4 cut(s) 97, 145, 202, 268
Hpy166II GTNNAC 4 cut(s) 122, 171, 350, 453
Hpy188I TCNGA 8 cut(s) 34, 45, 65, 105, 246, 397, 543, 556
Hpy188III TCNNGA 2 cut(s) 199, 569
Hpy8I GTNNAC 4 cut(s) 122, 171, 350, 453
Hpy99I CGWCG 1 cut(s) 505
HpyAV CCTTC 2 cut(s) 551, 575
HpyCH4III ACNGT 2 cut(s) 154, 185
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 218, 521, 619
HpyF10VI GCNNNNNNNGC 2 cut(s) 518, 524
HpyF3I CTNAG 4 cut(s) 31, 230, 396, 542
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 3 cut(s) 256, 367, 518
Kzo9I GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
LmnI GCTCC 1 cut(s) 209
Lsp1109I GCAGC 1 cut(s) 505
LweI GCATC 3 cut(s) 205, 271, 526
MaeI CTAG 1 cut(s) 479
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 3 cut(s) 274, 582, 639
MalI GATC 9 cut(s) 5, 102, 107, 197, 243, 248, 394, 579, 663
MboI GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
MboII GAAGA 5 cut(s) 148, 205, 283, 366, 602
MfeI CAATTG 1 cut(s) 614
MflI RGATCY 3 cut(s) 246, 392, 661
MluCI AATT 1 cut(s) 614
MnlI CCTC 9 cut(s) 69, 188, 195, 260, 361, 383, 391, 418, 537
MseI TTAA 3 cut(s) 258, 464, 605
MslI CAYNNNNRTG 1 cut(s) 281
MspCI CTTAAG 1 cut(s) 463
MspI CCGG 1 cut(s) 631
MspR9I CCNGG 1 cut(s) 98
MunI CAATTG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 98
MwoI GCNNNNNNNGC 2 cut(s) 518, 524
NcoI CCATGG 1 cut(s) 363
NdeII GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
NlaIII CATG 3 cut(s) 256, 367, 518
NlaIV GGNNCC 1 cut(s) 211
NmuCI GTSAC 2 cut(s) 274, 639
PceI AGGCCT 1 cut(s) 434
PfeI GAWTC 4 cut(s) 46, 226, 468, 482
PflFI GACNNNGTC 1 cut(s) 425
PkrI GCNGC 2 cut(s) 145, 520
Psp6I CCWGG 1 cut(s) 96
PspGI CCWGG 1 cut(s) 96
PspN4I GGNNCC 1 cut(s) 211
PspPI GGNCC 3 cut(s) 94, 122, 628
PstI CTGCAG 1 cut(s) 523
PsuI RGATCY 3 cut(s) 246, 392, 661
PsyI GACNNNGTC 1 cut(s) 425
RsaI GTAC 1 cut(s) 351
RsaNI GTAC 1 cut(s) 350
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 3 cut(s) 258, 464, 605
SatI GCNGC 2 cut(s) 144, 519
Sau3AI GATC 9 cut(s) 3, 100, 105, 195, 241, 246, 392, 577, 661
Sau96I GGNCC 3 cut(s) 94, 122, 628
ScrFI CCNGG 1 cut(s) 98
SetI ASST 9 cut(s) 12, 84, 121, 127, 345, 412, 429, 514, 652
SfaNI GCATC 3 cut(s) 205, 271, 526
SfcI CTRYAG 1 cut(s) 519
SinI GGWCC 2 cut(s) 122, 628
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 2 cut(s) 463, 569
SmoI CTYRAG 2 cut(s) 463, 569
Sse9I AATT 1 cut(s) 614
SseBI AGGCCT 1 cut(s) 434
SsiI CCGC 3 cut(s) 112, 143, 146
SspMI CTAG 1 cut(s) 479
StuI AGGCCT 1 cut(s) 434
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 2 cut(s) 363, 435
TaaI ACNGT 2 cut(s) 154, 185
TaiI ACGT 1 cut(s) 121
TasI AATT 1 cut(s) 614
TauI GCSGC 1 cut(s) 146
TfiI GAWTC 4 cut(s) 46, 226, 468, 482
Tru1I TTAA 3 cut(s) 258, 464, 605
Tru9I TTAA 3 cut(s) 258, 464, 605
TscAI CASTG 1 cut(s) 535
TseFI GTSAC 2 cut(s) 274, 639
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 2 cut(s) 274, 639
TspDTI ATGAA 1 cut(s) 7
TspGWI ACGGA 1 cut(s) 254
TspRI CASTG 1 cut(s) 535
Tth111I GACNNNGTC 1 cut(s) 425
Vha464I CTTAAG 1 cut(s) 463
VpaK11BI GGWCC 2 cut(s) 122, 628
XmiI GTMKAC 1 cut(s) 452
XspI CTAG 1 cut(s) 479
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.