Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Forward (+)

8233029 .. 8244145

Gene Structure 11117 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1110800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGAATACAACTACTGTAGTATTAAGTGACAAGAGTTCCGCTTTTGAAAGATTGAAGCGGTTCGCTTTCTTCCTGATATTTCACTCTCTCTGTACTCTCCAGCTACCATTCAAAAAGAAAAAAAAAAAACTAGTCTCCCATTTACTCTCCCACCCATACTCTCACATTCATCCACTCTCCCCTGCACTCTCTCTTTACATCTTGTTCTCGGAGTTTGGAGTAAAGATGTTGCAGCTGCTGTACACGGTGATTTTCAGCGAAATGCTGCTGATTTTGGCCTTCTTGTTCAAGAACCCTCTGAGAAAGCTAGTGATTCTCGCCTTGGATAAGATGAAGCAAGGGAAGGGCCCGGTGATGGTGAAGACGGTCGCTGGGACTGTATTTGCTGTTCTGATGGCCGACGTCTACAATCTGGTTGACATCAAGAACCGAACCATTGAATCTGGCGTGCTCAACCCTACGGACGAGGTTCTCATGTCCGTGAAAATGCTCGAAATTTCTCTTATGGGATTTTTTCTGTTTCTTTCTCTGATGATAGATAGATTGCACCATTATATACGAGAACTTCGATTCCTCAGGAAGGCCATGGAGGCTGTGAAAAGACAAAACCAAAGTTCTCAAGAGGAGAAAAACGGAAGTTCAAAGCAACTTAAGACCATAGTACAAGAGAATGAGACATTGAGGACAAAGATCAAGACTCTGGAATCTGAATATGAGACGAAAGAGAAGAAGGCAGAGGCGGCGGGAAGTGAGGTAGAGGCCCTAAGAAAGCAATCTGAAGGACTTCTTATGGAATACGACCGCTTGCTGGCAGACAACCAAAATCTCCGCAGTCAGTTAACATCGATTGAACAAAGCGCATCCCACACTGATGGAAAAAAGAACACGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

297

Amino Acids

33.88

Weight (kDa)

9.58

Isoelectric Point (pI)

48.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
AccI	GTMKAC	1 cut(s)	405
AciI	CCGC	6 cut(s)	39, 58, 740, 743, 802, 829
AcoI	YGGCCR	1 cut(s)	396
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	1 cut(s)	798
AcyI	GRCGYC	1 cut(s)	402
AfaI	GTAC	3 cut(s)	94, 242, 663
AfiI	CCNNNNNNNGG	3 cut(s)	355, 580, 808
AflII	CTTAAG	1 cut(s)	650
AflIII	ACRYGT	1 cut(s)	885
AgsI	TTSAA	7 cut(s)	47, 55, 112, 289, 440, 642, 851
AhlI	ACTAGT	1 cut(s)	130
AloI	GAACNNNNNNTCC	2 cut(s)	555, 587
AluBI	AGCT	3 cut(s)	103, 235, 307
AluI	AGCT	3 cut(s)	103, 235, 307
Alw21I	GWGCWC	1 cut(s)	453
Alw26I	GTCTC	3 cut(s)	139, 668, 710
AlwNI	CAGNNNCTG	1 cut(s)	238
AoxI	GGCC	5 cut(s)	276, 346, 396, 582, 759
ApaI	GGGCCC	1 cut(s)	350
ApeKI	GCWGC	3 cut(s)	232, 235, 265
ApoI	RAATTY	1 cut(s)	495
Asp700I	GAANNNNTTC	2 cut(s)	59, 783
AspLEI	GCGC	1 cut(s)	860
AspS9I	GGNCC	3 cut(s)	346, 347, 760
AsuC2I	CCSGG	1 cut(s)	350
AsuHPI	GGTGA	3 cut(s)	259, 364, 370
AxyI	CCTNAGG	1 cut(s)	575
BaeGI	GKGCMC	1 cut(s)	350
BanII	GRGCYC	1 cut(s)	350
BbsI	GAAGAC	1 cut(s)	368
Bbv12I	GWGCWC	1 cut(s)	453
BbvI	GCAGC	3 cut(s)	222, 244, 252
BccI	CCATC	3 cut(s)	349, 388, 866
BcnI	CCSGG	1 cut(s)	350
BcoDI	GTCTC	3 cut(s)	139, 668, 710
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	2 cut(s)	131, 308
BfmI	CTRYAG	1 cut(s)	15
BfrI	CTTAAG	1 cut(s)	650
BglI	GCCNNNNNGGC	1 cut(s)	590
BisI	GCNGC	4 cut(s)	233, 236, 266, 741
BlsI	GCNGC	4 cut(s)	234, 237, 267, 742
Bme1390I	CCNGG	1 cut(s)	350
BmgT120I	GGNCC	3 cut(s)	346, 347, 760
BmiI	GGNNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	350
BmsI	GCATC	1 cut(s)	869
BpiI	GAAGAC	1 cut(s)	368
BpmI	CTGGAG	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	603
BpuMI	CCSGG	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	845
BsaAI	YACGTR	1 cut(s)	888
BsaHI	GRCGYC	1 cut(s)	402
BsaJI	CCNNGG	2 cut(s)	321, 585
Bsc4I	CCNNNNNNNGG	3 cut(s)	355, 580, 808
Bse21I	CCTNAGG	1 cut(s)	575
BseCI	ATCGAT	1 cut(s)	845
BseDI	CCNNGG	2 cut(s)	321, 585
BseGI	GGATG	2 cut(s)	169, 860
BseLI	CCNNNNNNNGG	3 cut(s)	355, 580, 808
BseMII	CTCAG	2 cut(s)	290, 589
BseRI	GAGGAG	1 cut(s)	638
BseSI	GKGCMC	1 cut(s)	350
BseXI	GCAGC	3 cut(s)	222, 244, 252
BseYI	CCCAGC	1 cut(s)	371
BsgI	GTGCAG	1 cut(s)	168
Bsh1285I	CGRYCG	2 cut(s)	369, 802
BshFI	GGCC	5 cut(s)	278, 348, 398, 584, 761
BshVI	ATCGAT	1 cut(s)	845
BsiEI	CGRYCG	2 cut(s)	369, 802
BsiHKAI	GWGCWC	1 cut(s)	453
BsiSI	CCGG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	388
BslI	CCNNNNNNNGG	3 cut(s)	355, 580, 808
BsmAI	GTCTC	3 cut(s)	139, 668, 710
BsmBI	CGTCTC	1 cut(s)	710
BsmFI	GGGAC	1 cut(s)	388
BsnI	GGCC	5 cut(s)	278, 348, 398, 584, 761
Bsp120I	GGGCCC	1 cut(s)	346
Bsp1286I	GDGCHC	2 cut(s)	350, 453
Bsp1407I	TGTACA	1 cut(s)	240
Bsp143I	GATC	1 cut(s)	690
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	6 cut(s)	39, 58, 740, 743, 802, 829
BspANI	GGCC	5 cut(s)	278, 348, 398, 584, 761
BspCNI	CTCAG	2 cut(s)	291, 588
BspDI	ATCGAT	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	348
BspTI	CTTAAG	1 cut(s)	650
BsrGI	TGTACA	1 cut(s)	240
BssECI	CCNNGG	2 cut(s)	321, 585
BssMI	GATC	1 cut(s)	690
BssNI	GRCGYC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	321, 585
Bst4CI	ACNGT	4 cut(s)	16, 247, 367, 379
BstACI	GRCGYC	1 cut(s)	402
BstAFI	CTTAAG	1 cut(s)	650
BstAUI	TGTACA	1 cut(s)	240
BstBAI	YACGTR	1 cut(s)	888
BstC8I	GCNNGC	3 cut(s)	449, 806, 810
BstDEI	CTNAG	3 cut(s)	299, 575, 764
BstDSI	CCRYGG	1 cut(s)	585
BstENI	CCTNNNNNAGG	1 cut(s)	578
BstF5I	GGATG	2 cut(s)	169, 860
BstHHI	GCGC	1 cut(s)	860
BstKTI	GATC	1 cut(s)	693
BstMAI	GTCTC	3 cut(s)	139, 668, 710
BstMBI	GATC	1 cut(s)	690
BstMCI	CGRYCG	2 cut(s)	369, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	590, 740
BstSCI	CCNGG	1 cut(s)	348
BstSFI	CTRYAG	1 cut(s)	15
BstSLI	GKGCMC	1 cut(s)	350
BstV1I	GCAGC	3 cut(s)	222, 244, 252
BstV2I	GAAGAC	1 cut(s)	368
BstXI	CCANNNNNNTGG	1 cut(s)	872
Bsu15I	ATCGAT	1 cut(s)	845
Bsu36I	CCTNAGG	1 cut(s)	575
BsuRI	GGCC	5 cut(s)	278, 348, 398, 584, 761
BsuTUI	ATCGAT	1 cut(s)	845
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	2 cut(s)	169, 860
BtsIMutI	CAGTG	1 cut(s)	867
Cac8I	GCNNGC	3 cut(s)	449, 806, 810
CaiI	CAGNNNCTG	1 cut(s)	238
CfoI	GCGC	1 cut(s)	860
Cfr13I	GGNCC	3 cut(s)	346, 347, 760
ClaI	ATCGAT	1 cut(s)	845
Csp6I	GTAC	3 cut(s)	93, 241, 662
CviAII	CATG	2 cut(s)	475, 586
CviJI	RGCY	9 cut(s)	103, 235, 278, 307, 348, 398, 584, 593, 761
CviKI_1	RGCY	9 cut(s)	103, 235, 278, 307, 348, 398, 584, 593, 761
CviQI	GTAC	3 cut(s)	93, 241, 662
DdeI	CTNAG	3 cut(s)	299, 575, 764
DpnI	GATC	1 cut(s)	692
DpnII	GATC	1 cut(s)	690
EaeI	YGGCCR	1 cut(s)	396
Eco130I	CCWWGG	2 cut(s)	321, 585
Eco24I	GRGCYC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	798
Eco81I	CCTNAGG	1 cut(s)	575
EcoNI	CCTNNNNNAGG	1 cut(s)	578
EcoO109I	RGGNCCY	2 cut(s)	346, 760
EcoT14I	CCWWGG	2 cut(s)	321, 585
EcoT38I	GRGCYC	1 cut(s)	350
ErhI	CCWWGG	2 cut(s)	321, 585
Esp3I	CGTCTC	1 cut(s)	710
FaeI	CATG	2 cut(s)	478, 589
FaiI	YATR	9 cut(s)	157, 476, 506, 555, 557, 587, 659, 714, 791
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	1 cut(s)	388
FatI	CATG	2 cut(s)	474, 585
FauI	CCCGC	1 cut(s)	736
FblI	GTMKAC	1 cut(s)	405
Fnu4HI	GCNGC	4 cut(s)	233, 236, 266, 741
FokI	GGATG	2 cut(s)	156, 847
FriOI	GRGCYC	1 cut(s)	350
Fsp4HI	GCNGC	4 cut(s)	233, 236, 266, 741
FspBI	CTAG	2 cut(s)	131, 308
GlaI	GCGC	1 cut(s)	859
GluI	GCNGC	4 cut(s)	233, 236, 266, 741
GsaI	CCCAGC	1 cut(s)	375
GsuI	CTGGAG	1 cut(s)	83
HaeIII	GGCC	5 cut(s)	278, 348, 398, 584, 761
HapII	CCGG	1 cut(s)	350
HhaI	GCGC	1 cut(s)	860
Hin1I	GRCGYC	1 cut(s)	402
Hin1II	CATG	2 cut(s)	478, 589
Hin6I	GCGC	1 cut(s)	858
HinP1I	GCGC	1 cut(s)	858
HincII	GTYRAC	2 cut(s)	418, 840
HindII	GTYRAC	2 cut(s)	418, 840
HinfI	GANTC	5 cut(s)	313, 440, 570, 697, 704
HpaI	GTTAAC	1 cut(s)	840
HpaII	CCGG	1 cut(s)	350
HphI	GGTGA	3 cut(s)	259, 364, 370
Hpy166II	GTNNAC	4 cut(s)	243, 406, 418, 840
Hpy188I	TCNGA	6 cut(s)	211, 300, 393, 531, 709, 778
Hpy188III	TCNNGA	7 cut(s)	73, 289, 424, 577, 620, 694, 701
Hpy8I	GTNNAC	4 cut(s)	243, 406, 418, 840
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	5 cut(s)	289, 337, 574, 724, 773
HpyCH4III	ACNGT	4 cut(s)	16, 247, 367, 379
HpyCH4IV	ACGT	2 cut(s)	402, 887
HpyCH4V	TGCA	3 cut(s)	185, 232, 547
HpyF10VI	GCNNNNNNNGC	2 cut(s)	590, 740
HpyF3I	CTNAG	3 cut(s)	299, 575, 764
HpySE526I	ACGT	2 cut(s)	402, 887
Hsp92I	GRCGYC	1 cut(s)	402
Hsp92II	CATG	2 cut(s)	478, 589
HspAI	GCGC	1 cut(s)	858
KspAI	GTTAAC	1 cut(s)	840
Kzo9I	GATC	1 cut(s)	690
Lsp1109I	GCAGC	3 cut(s)	222, 244, 252
LweI	GCATC	1 cut(s)	869
MaeI	CTAG	2 cut(s)	131, 308
MaeII	ACGT	2 cut(s)	402, 887
MaeIII	GTNAC	1 cut(s)	26
MalI	GATC	1 cut(s)	692
MboI	GATC	1 cut(s)	690
MboII	GAAGA	3 cut(s)	61, 373, 739
MhlI	GDGCHC	2 cut(s)	350, 453
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	1 cut(s)	691
MnlI	CCTC	9 cut(s)	306, 460, 583, 584, 616, 675, 730, 745, 751
MroXI	GAANNNNTTC	2 cut(s)	59, 783
MseI	TTAA	3 cut(s)	23, 651, 839
MslI	CAYNNNNRTG	2 cut(s)	479, 870
MspA1I	CMGCKG	1 cut(s)	235
MspCI	CTTAAG	1 cut(s)	650
MspI	CCGG	1 cut(s)	350
MspR9I	CCNGG	1 cut(s)	350
MwoI	GCNNNNNNNGC	2 cut(s)	590, 740
NciI	CCSGG	1 cut(s)	350
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	1 cut(s)	690
NlaIII	CATG	2 cut(s)	478, 589
NlaIV	GGNNCC	1 cut(s)	348
NmuCI	GTSAC	1 cut(s)	26
PcsI	WCGNNNNNNNCGW	1 cut(s)	565
PdmI	GAANNNNTTC	2 cut(s)	59, 783
PfeI	GAWTC	4 cut(s)	313, 440, 570, 704
PkrI	GCNGC	4 cut(s)	234, 237, 267, 742
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
Ppu21I	YACGTR	1 cut(s)	888
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	1 cut(s)	348
PspOMI	GGGCCC	1 cut(s)	346
PspPI	GGNCC	3 cut(s)	346, 347, 760
PsrI	GAACNNNNNNTAC	2 cut(s)	372, 404
PstNI	CAGNNNCTG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	235
RsaI	GTAC	3 cut(s)	94, 242, 663
RsaNI	GTAC	3 cut(s)	93, 241, 662
RseI	CAYNNNNRTG	2 cut(s)	479, 870
SaqAI	TTAA	3 cut(s)	23, 651, 839
SatI	GCNGC	4 cut(s)	233, 236, 266, 741
Sau3AI	GATC	1 cut(s)	690
Sau96I	GGNCC	3 cut(s)	346, 347, 760
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	350
SduI	GDGCHC	2 cut(s)	350, 453
SetI	ASST	7 cut(s)	105, 237, 309, 405, 471, 756, 890
SfaNI	GCATC	1 cut(s)	869
SfcI	CTRYAG	1 cut(s)	15
SmiMI	CAYNNNNRTG	2 cut(s)	479, 870
SmlI	CTYRAG	2 cut(s)	618, 650
SmoI	CTYRAG	2 cut(s)	618, 650
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	6 cut(s)	39, 58, 740, 743, 802, 829
SspMI	CTAG	2 cut(s)	131, 308
StyD4I	CCNGG	1 cut(s)	348
StyI	CCWWGG	2 cut(s)	321, 585
TaaI	ACNGT	4 cut(s)	16, 247, 367, 379
TaiI	ACGT	2 cut(s)	405, 890
TaqI	TCGA	3 cut(s)	492, 568, 845
TasI	AATT	1 cut(s)	495
TatI	WGTACW	3 cut(s)	92, 240, 661
TauI	GCSGC	1 cut(s)	743
TfiI	GAWTC	4 cut(s)	313, 440, 570, 704
Tru1I	TTAA	3 cut(s)	23, 651, 839
Tru9I	TTAA	3 cut(s)	23, 651, 839
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	1 cut(s)	26
TseI	GCWGC	3 cut(s)	232, 235, 265
Tsp45I	GTSAC	1 cut(s)	26
TspDTI	ATGAA	3 cut(s)	17, 158, 347
TspGWI	ACGGA	3 cut(s)	469, 476, 648
TspRI	CASTG	1 cut(s)	874
Vha464I	CTTAAG	1 cut(s)	650
XagI	CCTNNNNNAGG	1 cut(s)	578
XapI	RAATTY	1 cut(s)	495
XmiI	GTMKAC	1 cut(s)	405
XmnI	GAANNNNTTC	2 cut(s)	59, 783
XspI	CTAG	2 cut(s)	131, 308
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.