Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Reverse (-)

21834294 .. 21836640

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G215700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 666 bp

ATGTTGCAGCTGCTATACGGGGTCATTTTCGGGGAAATGTTCCTGATTTTGACCTTGTTGTTTAAGAGCCCTCTGAGGAAGCTAGTGATCCTGGCCTTGGATAAGATGAAGCGAGGGAAGGGCCCAGTGATGGTGAAGACAGTCGCTGGGACTGTATTTGTTGTTCTCCTGGCCGGCGTCTACAATCTGGTTGACATCAAGAACCGAACCATTGAGTCTGGTGTGCTCAACCCTACGGACGAGGTTCTCATGTCCGTGAAAATGCTTGAAATTTCTCTCATGGGGTTTTTTCTGTTTCTTTCACTGATGTTAGATAGATTGCACCATTACATAAGGGAACTTCGATTCCTCAGGAAGGCCATGGATGCTGCAAAAAAACAAAGCCAAAGTATTCAAGAGGAGAAAAATGGAAGTTCAGAGCAACTTAAGACCTTGGCACAAGAGAATGACACATTGAGGACAAAGATCAAGAATCTGGAATCTGAATATGAGACAAAAGCAAAGAAGGCAAAGGCGGCGGGAAGTGAGGTGGAGGCCCTGAGAAAGCAATCTGAAGGACTTCTTATGGAATATGACCGCTTGCTGGCAGACAACCAAAACCTCCGGAGCCAGTTAACATCGATTGAGCAAAGCACATCACACTCTGATGACAAAAAGAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

222

Amino Acids

25.06

Weight (kDa)

9.35

Isoelectric Point (pI)

49.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AccIII	TCCGGA	1 cut(s)	603
AciI	CCGC	3 cut(s)	515, 518, 577
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	171
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	573
AcyI	GRCGYC	1 cut(s)	177
AfiI	CCNNNNNNNGG	4 cut(s)	97, 130, 355, 583
AflII	CTTAAG	1 cut(s)	425
AgsI	TTSAA	2 cut(s)	269, 395
AjnI	CCWGG	2 cut(s)	90, 168
AloI	GAACNNNNNNTCC	2 cut(s)	330, 362
AluBI	AGCT	2 cut(s)	10, 82
AluI	AGCT	2 cut(s)	10, 82
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	485
AlwI	GGATC	1 cut(s)	82
AlwNI	CAGNNNCTG	1 cut(s)	146
Aor13HI	TCCGGA	1 cut(s)	603
AoxI	GGCC	5 cut(s)	93, 121, 171, 357, 534
ApaI	GGGCCC	1 cut(s)	125
ApeKI	GCWGC	3 cut(s)	7, 10, 368
ApoI	RAATTY	1 cut(s)	270
Asp700I	GAANNNNTTC	1 cut(s)	558
AspS9I	GGNCC	3 cut(s)	121, 122, 535
AsuHPI	GGTGA	1 cut(s)	145
AxyI	CCTNAGG	1 cut(s)	350
BaeGI	GKGCMC	1 cut(s)	125
BanII	GRGCYC	2 cut(s)	71, 125
BbsI	GAAGAC	1 cut(s)	143
Bbv12I	GWGCWC	1 cut(s)	228
BbvI	GCAGC	2 cut(s)	19, 355
BccI	CCATC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	92, 170
BcoDI	GTCTC	1 cut(s)	485
BfaI	CTAG	1 cut(s)	83
BfrI	CTTAAG	1 cut(s)	425
BisI	GCNGC	4 cut(s)	8, 11, 369, 516
BlsI	GCNGC	4 cut(s)	9, 12, 370, 517
Bme1390I	CCNGG	2 cut(s)	92, 170
BmgT120I	GGNCC	3 cut(s)	121, 122, 535
BmiI	GGNNCC	2 cut(s)	123, 608
BmrFI	CCNGG	2 cut(s)	92, 170
BmrI	ACTGGG	1 cut(s)	119
BmsI	GCATC	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	119
BpiI	GAAGAC	1 cut(s)	143
Bsa29I	ATCGAT	1 cut(s)	620
BsaHI	GRCGYC	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	96, 360, 432
BsaWI	WCCGGW	1 cut(s)	603
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 130, 355, 583
Bse118I	RCCGGY	1 cut(s)	173
Bse1I	ACTGG	2 cut(s)	125, 610
Bse21I	CCTNAGG	1 cut(s)	350
BseAI	TCCGGA	1 cut(s)	603
BseBI	CCWGG	2 cut(s)	92, 170
BseCI	ATCGAT	1 cut(s)	620
BseDI	CCNNGG	3 cut(s)	96, 360, 432
BseGI	GGATG	1 cut(s)	370
BseLI	CCNNNNNNNGG	4 cut(s)	97, 130, 355, 583
BseMII	CTCAG	3 cut(s)	65, 364, 530
BseNI	ACTGG	2 cut(s)	125, 610
BseRI	GAGGAG	1 cut(s)	413
BseSI	GKGCMC	1 cut(s)	125
BseXI	GCAGC	2 cut(s)	19, 355
BseYI	CCCAGC	1 cut(s)	146
BshFI	GGCC	5 cut(s)	95, 123, 173, 359, 536
BshVI	ATCGAT	1 cut(s)	620
BsiHKAI	GWGCWC	1 cut(s)	228
BsiSI	CCGG	2 cut(s)	174, 604
BslFI	GGGAC	1 cut(s)	163
BslI	CCNNNNNNNGG	4 cut(s)	97, 130, 355, 583
BsmAI	GTCTC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	163
BsnI	GGCC	5 cut(s)	95, 123, 173, 359, 536
Bsp120I	GGGCCC	1 cut(s)	121
Bsp1286I	GDGCHC	3 cut(s)	71, 125, 228
Bsp13I	TCCGGA	1 cut(s)	603
Bsp143I	GATC	2 cut(s)	87, 465
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	3 cut(s)	515, 518, 577
BspANI	GGCC	5 cut(s)	95, 123, 173, 359, 536
BspCNI	CTCAG	3 cut(s)	66, 363, 531
BspDI	ATCGAT	1 cut(s)	620
BspEI	TCCGGA	1 cut(s)	603
BspLI	GGNNCC	2 cut(s)	123, 608
BspPI	GGATC	1 cut(s)	82
BspTI	CTTAAG	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	173
BsrI	ACTGG	2 cut(s)	125, 610
BssAI	RCCGGY	1 cut(s)	173
BssECI	CCNNGG	3 cut(s)	96, 360, 432
BssMI	GATC	2 cut(s)	87, 465
BssNI	GRCGYC	1 cut(s)	177
BssT1I	CCWWGG	3 cut(s)	96, 360, 432
Bst2UI	CCWGG	2 cut(s)	92, 170
Bst4CI	ACNGT	2 cut(s)	142, 154
BstACI	GRCGYC	1 cut(s)	177
BstAFI	CTTAAG	1 cut(s)	425
BstC8I	GCNNGC	3 cut(s)	175, 581, 585
BstDEI	CTNAG	3 cut(s)	74, 350, 539
BstDSI	CCRYGG	1 cut(s)	360
BstENI	CCTNNNNNAGG	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	370
BstKTI	GATC	2 cut(s)	90, 468
BstMAI	GTCTC	1 cut(s)	485
BstMBI	GATC	2 cut(s)	87, 465
BstMWI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
BstNI	CCWGG	2 cut(s)	92, 170
BstSCI	CCNGG	2 cut(s)	90, 168
BstSLI	GKGCMC	1 cut(s)	125
BstV1I	GCAGC	2 cut(s)	19, 355
BstV2I	GAAGAC	1 cut(s)	143
Bsu15I	ATCGAT	1 cut(s)	620
Bsu36I	CCTNAGG	1 cut(s)	350
BsuRI	GGCC	5 cut(s)	95, 123, 173, 359, 536
BsuTUI	ATCGAT	1 cut(s)	620
BtgI	CCRYGG	1 cut(s)	360
BtsCI	GGATG	1 cut(s)	370
BtsIMutI	CAGTG	2 cut(s)	132, 302
Cac8I	GCNNGC	3 cut(s)	175, 581, 585
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr10I	RCCGGY	1 cut(s)	173
Cfr13I	GGNCC	3 cut(s)	121, 122, 535
ClaI	ATCGAT	1 cut(s)	620
CseI	GACGC	1 cut(s)	166
CviAII	CATG	3 cut(s)	250, 280, 361
DdeI	CTNAG	3 cut(s)	74, 350, 539
DpnI	GATC	2 cut(s)	89, 467
DpnII	GATC	2 cut(s)	87, 465
EaeI	YGGCCR	1 cut(s)	171
Eco130I	CCWWGG	3 cut(s)	96, 360, 432
Eco24I	GRGCYC	2 cut(s)	71, 125
Eco57I	CTGAAG	1 cut(s)	573
Eco81I	CCTNAGG	1 cut(s)	350
EcoNI	CCTNNNNNAGG	1 cut(s)	353
EcoO109I	RGGNCCY	2 cut(s)	121, 535
EcoRII	CCWGG	2 cut(s)	90, 168
EcoT14I	CCWWGG	3 cut(s)	96, 360, 432
EcoT38I	GRGCYC	2 cut(s)	71, 125
ErhI	CCWWGG	3 cut(s)	96, 360, 432
FaeI	CATG	3 cut(s)	253, 283, 364
FaiI	YATR	9 cut(s)	16, 251, 281, 332, 362, 489, 566, 573, 664
FalI	AAGNNNNNCTT	2 cut(s)	546, 578
FaqI	GGGAC	1 cut(s)	163
FatI	CATG	3 cut(s)	249, 279, 360
FauI	CCCGC	1 cut(s)	511
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	8, 11, 369, 516
FokI	GGATG	1 cut(s)	377
FriOI	GRGCYC	2 cut(s)	71, 125
Fsp4HI	GCNGC	4 cut(s)	8, 11, 369, 516
FspBI	CTAG	1 cut(s)	83
GluI	GCNGC	4 cut(s)	8, 11, 369, 516
GsaI	CCCAGC	1 cut(s)	150
HaeIII	GGCC	5 cut(s)	95, 123, 173, 359, 536
HapII	CCGG	2 cut(s)	174, 604
HgaI	GACGC	1 cut(s)	166
Hin1I	GRCGYC	1 cut(s)	177
Hin1II	CATG	3 cut(s)	253, 283, 364
HincII	GTYRAC	2 cut(s)	193, 615
HindII	GTYRAC	2 cut(s)	193, 615
HinfI	GANTC	4 cut(s)	215, 345, 472, 479
HpaI	GTTAAC	1 cut(s)	615
HpaII	CCGG	2 cut(s)	174, 604
HphI	GGTGA	1 cut(s)	145
Hpy166II	GTNNAC	3 cut(s)	181, 193, 615
Hpy188I	TCNGA	5 cut(s)	75, 418, 484, 553, 646
Hpy188III	TCNNGA	7 cut(s)	43, 199, 352, 395, 469, 476, 604
Hpy8I	GTNNAC	3 cut(s)	181, 193, 615
HpyAV	CCTTC	4 cut(s)	112, 349, 499, 548
HpyCH4III	ACNGT	2 cut(s)	142, 154
HpyCH4V	TGCA	3 cut(s)	7, 322, 371
HpyF10VI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
HpyF3I	CTNAG	3 cut(s)	74, 350, 539
Hsp92I	GRCGYC	1 cut(s)	177
Hsp92II	CATG	3 cut(s)	253, 283, 364
Kpn2I	TCCGGA	1 cut(s)	603
KroI	GCCGGC	1 cut(s)	173
KroNI	GCCGGC	1 cut(s)	175
KspAI	GTTAAC	1 cut(s)	615
Kzo9I	GATC	2 cut(s)	87, 465
LmnI	GCTCC	1 cut(s)	606
Lsp1109I	GCAGC	2 cut(s)	19, 355
LweI	GCATC	1 cut(s)	355
MaeI	CTAG	1 cut(s)	83
MalI	GATC	2 cut(s)	89, 467
MboI	GATC	2 cut(s)	87, 465
MboII	GAAGA	1 cut(s)	148
MhlI	GDGCHC	3 cut(s)	71, 125, 228
MluCI	AATT	1 cut(s)	270
MlyI	GAGTC	1 cut(s)	224
MroI	TCCGGA	1 cut(s)	603
MroNI	GCCGGC	1 cut(s)	173
MroXI	GAANNNNTTC	1 cut(s)	558
MseI	TTAA	3 cut(s)	63, 426, 614
MslI	CAYNNNNRTG	2 cut(s)	254, 645
MspA1I	CMGCKG	1 cut(s)	10
MspCI	CTTAAG	1 cut(s)	425
MspI	CCGG	2 cut(s)	174, 604
MspR9I	CCNGG	2 cut(s)	92, 170
MvaI	CCWGG	2 cut(s)	92, 170
MwoI	GCNNNNNNNGC	3 cut(s)	365, 506, 515
NaeI	GCCGGC	1 cut(s)	175
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	2 cut(s)	87, 465
NgoMIV	GCCGGC	1 cut(s)	173
NlaIII	CATG	3 cut(s)	253, 283, 364
NlaIV	GGNNCC	2 cut(s)	123, 608
PdiI	GCCGGC	1 cut(s)	175
PdmI	GAANNNNTTC	1 cut(s)	558
PfeI	GAWTC	3 cut(s)	345, 472, 479
PkrI	GCNGC	4 cut(s)	9, 12, 370, 517
PleI	GAGTC	1 cut(s)	223
PpsI	GAGTC	1 cut(s)	223
Psp6I	CCWGG	2 cut(s)	90, 168
PspFI	CCCAGC	1 cut(s)	146
PspGI	CCWGG	2 cut(s)	90, 168
PspN4I	GGNNCC	2 cut(s)	123, 608
PspOMI	GGGCCC	1 cut(s)	121
PspPI	GGNCC	3 cut(s)	121, 122, 535
PsrI	GAACNNNNNNTAC	2 cut(s)	147, 179
PstNI	CAGNNNCTG	1 cut(s)	146
PvuII	CAGCTG	1 cut(s)	10
RseI	CAYNNNNRTG	2 cut(s)	254, 645
SaqAI	TTAA	3 cut(s)	63, 426, 614
SatI	GCNGC	4 cut(s)	8, 11, 369, 516
Sau3AI	GATC	2 cut(s)	87, 465
Sau96I	GGNCC	3 cut(s)	121, 122, 535
SchI	GAGTC	1 cut(s)	224
ScrFI	CCNGG	2 cut(s)	92, 170
SduI	GDGCHC	3 cut(s)	71, 125, 228
SetI	ASST	7 cut(s)	12, 56, 84, 246, 434, 531, 603
SfaNI	GCATC	1 cut(s)	355
SmiMI	CAYNNNNRTG	2 cut(s)	254, 645
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	1 cut(s)	270
SsiI	CCGC	3 cut(s)	515, 518, 577
SspMI	CTAG	1 cut(s)	83
StyD4I	CCNGG	2 cut(s)	90, 168
StyI	CCWWGG	3 cut(s)	96, 360, 432
TaaI	ACNGT	2 cut(s)	142, 154
TaqI	TCGA	2 cut(s)	343, 620
TasI	AATT	1 cut(s)	270
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	3 cut(s)	345, 472, 479
Tru1I	TTAA	3 cut(s)	63, 426, 614
Tru9I	TTAA	3 cut(s)	63, 426, 614
TscAI	CASTG	2 cut(s)	132, 309
TseI	GCWGC	3 cut(s)	7, 10, 368
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	2 cut(s)	244, 251
TspRI	CASTG	2 cut(s)	132, 309
Vha464I	CTTAAG	1 cut(s)	425
XagI	CCTNNNNNAGG	1 cut(s)	353
XapI	RAATTY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	558
XspI	CTAG	1 cut(s)	83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.