Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Forward (+)

2471973 .. 2474445

Gene Structure 2473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g03330.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGTTGCCATGGTCAACTTTAGTTCAATTGAACCTACTCTCAAACCTACTAAACCGATATTTGTTTATAATTCAAGCGGTTCGCTTTCTTCCTGATATTTCACTCTCTCTACTCTCCAGCTACCTTTCAAAAAGAAAAAAACCCATCCACTTTCTCCCTGCACTCTCTCTTTACATCGTGTTCTCGGAGTTTGGAGTAAAGATGTTGCAGCTGCTGTACACAGTGATTTTCAGCGAAATGCTGCTGATTTTGACCTTGTTGTTCAAGAACCCTCTGAGAAAGCTAGTGATCCTCGCCTTGGATAAGATGAAGCGAGGGAAGGGCCCGGTGATGGTGAAGACGGTCGCTGGGACTGTATTCGCTGTTCTGATGGCCGACGTCTTCAATCTGGTTGACATCAAGAACCGAACCATTGAATCTGGCGTGCTCAAGCCTACGGACGAGATTCTCATGTCCATGAAAATGCTCGAAATTTCTCTTATGGGATTTTTTCTGTTTCTTGCTCTGATGACAGATAGATTGCACCATTACATACGAGAACTTCGATTCCTCAGGAAGGCCATGGAGGCTGCGAAAAGACAAAACCAAAGTTCTCAAGAGGAGAAAAACGGAAGTTCAGAGCAACTTAAGACCATAGTACAAGAGAATGAGACATTGAAGACAAAGATCAAGACTCTGGAATCTGAATATGAGACGAATGCAAAGAAGGCAAAGGTGGCCGGAAGTGAGGTAGAGGCCCTAAGAAAGCAATCTGAAGGACTCCTTATGGAATATGACCGCTTGCTGGCAGACAACCAAAACCTCCGCAGTCAGTTAACGTCGATTGAACAAAGCGCATCCCACACTGATGGAAAAAAGAACACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

289

Amino Acids

32.92

Weight (kDa)

9.63

Isoelectric Point (pI)

44.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	68
AatII	GACGTC	1 cut(s)	381
AciI	CCGC	3 cut(s)	77, 778, 805
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	372, 717
AcsI	RAATTY	1 cut(s)	471
AcuI	CTGAAG	1 cut(s)	774
AcyI	GRCGYC	1 cut(s)	378
AfaI	GTAC	2 cut(s)	218, 639
AfiI	CCNNNNNNNGG	4 cut(s)	298, 331, 556, 784
AflII	CTTAAG	1 cut(s)	626
AgsI	TTSAA	9 cut(s)	26, 31, 74, 129, 265, 385, 416, 658, 827
AloI	GAACNNNNNNTCC	2 cut(s)	531, 563
AluBI	AGCT	3 cut(s)	120, 211, 283
AluI	AGCT	3 cut(s)	120, 211, 283
Alw21I	GWGCWC	1 cut(s)	429
Alw26I	GTCTC	2 cut(s)	644, 686
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	214
AoxI	GGCC	5 cut(s)	322, 372, 558, 717, 735
ApaI	GGGCCC	1 cut(s)	326
ApeKI	GCWGC	4 cut(s)	208, 211, 241, 569
ApoI	RAATTY	1 cut(s)	471
AspLEI	GCGC	1 cut(s)	836
AspS9I	GGNCC	3 cut(s)	322, 323, 736
AsuC2I	CCSGG	1 cut(s)	326
AsuHPI	GGTGA	2 cut(s)	340, 346
AxyI	CCTNAGG	1 cut(s)	551
BaeGI	GKGCMC	1 cut(s)	326
BanII	GRGCYC	1 cut(s)	326
BbsI	GAAGAC	3 cut(s)	344, 373, 665
Bbv12I	GWGCWC	1 cut(s)	429
BbvI	GCAGC	4 cut(s)	198, 220, 228, 556
BccI	CCATC	4 cut(s)	152, 325, 364, 842
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	644, 686
BfaI	CTAG	1 cut(s)	284
BfrI	CTTAAG	1 cut(s)	626
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	4 cut(s)	209, 212, 242, 570
BlsI	GCNGC	4 cut(s)	210, 213, 243, 571
Bme1390I	CCNGG	1 cut(s)	326
BmgT120I	GGNCC	3 cut(s)	322, 323, 736
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	1 cut(s)	326
BmsI	GCATC	1 cut(s)	845
BpiI	GAAGAC	3 cut(s)	344, 373, 665
BpmI	CTGGAG	1 cut(s)	100
BpuEI	CTTGAG	2 cut(s)	413, 579
BpuMI	CCSGG	1 cut(s)	326
BsaHI	GRCGYC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	8, 297, 561
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 331, 556, 784
Bse21I	CCTNAGG	1 cut(s)	551
BseDI	CCNNGG	3 cut(s)	8, 297, 561
BseGI	GGATG	2 cut(s)	144, 836
BseLI	CCNNNNNNNGG	4 cut(s)	298, 331, 556, 784
BseMII	CTCAG	2 cut(s)	266, 565
BseRI	GAGGAG	1 cut(s)	614
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	4 cut(s)	198, 220, 228, 556
BseYI	CCCAGC	1 cut(s)	347
BsgI	GTGCAG	1 cut(s)	144
Bsh1285I	CGRYCG	1 cut(s)	345
BshFI	GGCC	5 cut(s)	324, 374, 560, 719, 737
BsiEI	CGRYCG	1 cut(s)	345
BsiHKAI	GWGCWC	1 cut(s)	429
BsiSI	CCGG	2 cut(s)	326, 720
BslFI	GGGAC	1 cut(s)	364
BslI	CCNNNNNNNGG	4 cut(s)	298, 331, 556, 784
BsmAI	GTCTC	2 cut(s)	644, 686
BsmBI	CGTCTC	1 cut(s)	686
BsmFI	GGGAC	1 cut(s)	364
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	5 cut(s)	324, 374, 560, 719, 737
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	2 cut(s)	326, 429
Bsp1407I	TGTACA	1 cut(s)	216
Bsp143I	GATC	2 cut(s)	288, 666
Bsp19I	CCATGG	2 cut(s)	8, 561
BspACI	CCGC	3 cut(s)	77, 778, 805
BspANI	GGCC	5 cut(s)	324, 374, 560, 719, 737
BspCNI	CTCAG	2 cut(s)	267, 564
BspLI	GGNNCC	1 cut(s)	324
BspPI	GGATC	1 cut(s)	283
BspTI	CTTAAG	1 cut(s)	626
BsrGI	TGTACA	1 cut(s)	216
BssECI	CCNNGG	3 cut(s)	8, 297, 561
BssMI	GATC	2 cut(s)	288, 666
BssNI	GRCGYC	1 cut(s)	378
BssT1I	CCWWGG	3 cut(s)	8, 297, 561
Bst4CI	ACNGT	3 cut(s)	223, 343, 355
BstACI	GRCGYC	1 cut(s)	378
BstAFI	CTTAAG	1 cut(s)	626
BstAUI	TGTACA	1 cut(s)	216
BstC8I	GCNNGC	3 cut(s)	425, 782, 786
BstDEI	CTNAG	3 cut(s)	275, 551, 740
BstDSI	CCRYGG	2 cut(s)	8, 561
BstENI	CCTNNNNNAGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	144, 836
BstHHI	GCGC	1 cut(s)	836
BstKTI	GATC	2 cut(s)	291, 669
BstMAI	GTCTC	2 cut(s)	644, 686
BstMBI	GATC	2 cut(s)	288, 666
BstMCI	CGRYCG	1 cut(s)	345
BstMWI	GCNNNNNNNGC	3 cut(s)	566, 707, 716
BstSCI	CCNGG	1 cut(s)	324
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	4 cut(s)	198, 220, 228, 556
BstV2I	GAAGAC	3 cut(s)	344, 373, 665
BstXI	CCANNNNNNTGG	1 cut(s)	848
Bsu36I	CCTNAGG	1 cut(s)	551
BsuRI	GGCC	5 cut(s)	324, 374, 560, 719, 737
BtgI	CCRYGG	2 cut(s)	8, 561
BtsCI	GGATG	2 cut(s)	144, 836
BtsIMutI	CAGTG	2 cut(s)	228, 843
Cac8I	GCNNGC	3 cut(s)	425, 782, 786
CaiI	CAGNNNCTG	1 cut(s)	214
CfoI	GCGC	1 cut(s)	836
Cfr13I	GGNCC	3 cut(s)	322, 323, 736
Csp6I	GTAC	2 cut(s)	217, 638
CviAII	CATG	4 cut(s)	9, 451, 457, 562
CviQI	GTAC	2 cut(s)	217, 638
DdeI	CTNAG	3 cut(s)	275, 551, 740
DpnI	GATC	2 cut(s)	290, 668
DpnII	GATC	2 cut(s)	288, 666
EaeI	YGGCCR	2 cut(s)	372, 717
Eco130I	CCWWGG	3 cut(s)	8, 297, 561
Eco24I	GRGCYC	1 cut(s)	326
Eco57I	CTGAAG	1 cut(s)	774
Eco81I	CCTNAGG	1 cut(s)	551
EcoNI	CCTNNNNNAGG	1 cut(s)	554
EcoO109I	RGGNCCY	2 cut(s)	322, 736
EcoT14I	CCWWGG	3 cut(s)	8, 297, 561
EcoT38I	GRGCYC	1 cut(s)	326
ErhI	CCWWGG	3 cut(s)	8, 297, 561
Esp3I	CGTCTC	1 cut(s)	686
FaeI	CATG	4 cut(s)	12, 454, 460, 565
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FaqI	GGGAC	1 cut(s)	364
FatI	CATG	4 cut(s)	8, 450, 456, 561
Fnu4HI	GCNGC	4 cut(s)	209, 212, 242, 570
FokI	GGATG	2 cut(s)	131, 823
FriOI	GRGCYC	1 cut(s)	326
Fsp4HI	GCNGC	4 cut(s)	209, 212, 242, 570
FspBI	CTAG	1 cut(s)	284
GlaI	GCGC	1 cut(s)	835
GluI	GCNGC	4 cut(s)	209, 212, 242, 570
GsaI	CCCAGC	1 cut(s)	351
GsuI	CTGGAG	1 cut(s)	100
HaeIII	GGCC	5 cut(s)	324, 374, 560, 719, 737
HapII	CCGG	2 cut(s)	326, 720
HhaI	GCGC	1 cut(s)	836
Hin1I	GRCGYC	1 cut(s)	378
Hin1II	CATG	4 cut(s)	12, 454, 460, 565
Hin6I	GCGC	1 cut(s)	834
HinP1I	GCGC	1 cut(s)	834
HincII	GTYRAC	3 cut(s)	15, 394, 816
HindII	GTYRAC	3 cut(s)	15, 394, 816
HinfI	GANTC	6 cut(s)	416, 445, 546, 673, 680, 759
HpaI	GTTAAC	1 cut(s)	816
HpaII	CCGG	2 cut(s)	326, 720
HphI	GGTGA	2 cut(s)	340, 346
Hpy166II	GTNNAC	4 cut(s)	15, 219, 394, 816
Hpy188I	TCNGA	7 cut(s)	187, 276, 369, 507, 619, 685, 754
Hpy188III	TCNNGA	7 cut(s)	92, 265, 400, 553, 596, 670, 677
Hpy8I	GTNNAC	4 cut(s)	15, 219, 394, 816
Hpy99I	CGWCG	2 cut(s)	380, 823
HpyAV	CCTTC	4 cut(s)	313, 550, 700, 749
HpyCH4III	ACNGT	3 cut(s)	223, 343, 355
HpyCH4IV	ACGT	2 cut(s)	378, 818
HpyCH4V	TGCA	4 cut(s)	161, 208, 523, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	566, 707, 716
HpyF3I	CTNAG	3 cut(s)	275, 551, 740
HpySE526I	ACGT	2 cut(s)	378, 818
Hsp92I	GRCGYC	1 cut(s)	378
Hsp92II	CATG	4 cut(s)	12, 454, 460, 565
HspAI	GCGC	1 cut(s)	834
KspAI	GTTAAC	1 cut(s)	816
Kzo9I	GATC	2 cut(s)	288, 666
Lsp1109I	GCAGC	4 cut(s)	198, 220, 228, 556
LweI	GCATC	1 cut(s)	845
MaeI	CTAG	1 cut(s)	284
MaeII	ACGT	2 cut(s)	378, 818
MalI	GATC	2 cut(s)	290, 668
MboI	GATC	2 cut(s)	288, 666
MboII	GAAGA	4 cut(s)	80, 349, 373, 670
MfeI	CAATTG	1 cut(s)	26
MhlI	GDGCHC	2 cut(s)	326, 429
MluCI	AATT	3 cut(s)	26, 69, 471
MlyI	GAGTC	2 cut(s)	667, 753
MnlI	CCTC	9 cut(s)	282, 302, 308, 559, 560, 592, 721, 727, 812
MseI	TTAA	2 cut(s)	627, 815
MslI	CAYNNNNRTG	3 cut(s)	455, 461, 846
MspA1I	CMGCKG	1 cut(s)	211
MspCI	CTTAAG	1 cut(s)	626
MspI	CCGG	2 cut(s)	326, 720
MspR9I	CCNGG	1 cut(s)	326
MunI	CAATTG	1 cut(s)	26
Mva1269I	GAATGC	1 cut(s)	703
MwoI	GCNNNNNNNGC	3 cut(s)	566, 707, 716
NciI	CCSGG	1 cut(s)	326
NcoI	CCATGG	2 cut(s)	8, 561
NdeII	GATC	2 cut(s)	288, 666
NlaIII	CATG	4 cut(s)	12, 454, 460, 565
NlaIV	GGNNCC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	541
PctI	GAATGC	1 cut(s)	703
PfeI	GAWTC	4 cut(s)	416, 445, 546, 680
PkrI	GCNGC	4 cut(s)	210, 213, 243, 571
PleI	GAGTC	2 cut(s)	667, 753
PpsI	GAGTC	2 cut(s)	667, 753
PsiI	TTATAA	1 cut(s)	68
PspFI	CCCAGC	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	324
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	3 cut(s)	322, 323, 736
PsrI	GAACNNNNNNTAC	2 cut(s)	348, 380
PstNI	CAGNNNCTG	1 cut(s)	214
PvuII	CAGCTG	1 cut(s)	211
RsaI	GTAC	2 cut(s)	218, 639
RsaNI	GTAC	2 cut(s)	217, 638
RseI	CAYNNNNRTG	3 cut(s)	455, 461, 846
SaqAI	TTAA	2 cut(s)	627, 815
SatI	GCNGC	4 cut(s)	209, 212, 242, 570
Sau3AI	GATC	2 cut(s)	288, 666
Sau96I	GGNCC	3 cut(s)	322, 323, 736
SchI	GAGTC	2 cut(s)	667, 753
ScrFI	CCNGG	1 cut(s)	326
SduI	GDGCHC	2 cut(s)	326, 429
SfaNI	GCATC	1 cut(s)	845
SmiMI	CAYNNNNRTG	3 cut(s)	455, 461, 846
SmlI	CTYRAG	3 cut(s)	428, 594, 626
SmoI	CTYRAG	3 cut(s)	428, 594, 626
Sse9I	AATT	3 cut(s)	26, 69, 471
SsiI	CCGC	3 cut(s)	77, 778, 805
SspMI	CTAG	1 cut(s)	284
StyD4I	CCNGG	1 cut(s)	324
StyI	CCWWGG	3 cut(s)	8, 297, 561
TaaI	ACNGT	3 cut(s)	223, 343, 355
TaiI	ACGT	2 cut(s)	381, 821
TaqI	TCGA	3 cut(s)	468, 544, 821
TasI	AATT	3 cut(s)	26, 69, 471
TatI	WGTACW	2 cut(s)	216, 637
TfiI	GAWTC	4 cut(s)	416, 445, 546, 680
Tru1I	TTAA	2 cut(s)	627, 815
Tru9I	TTAA	2 cut(s)	627, 815
TscAI	CASTG	2 cut(s)	228, 850
TseI	GCWGC	4 cut(s)	208, 211, 241, 569
TspDTI	ATGAA	2 cut(s)	323, 473
TspGWI	ACGGA	2 cut(s)	452, 624
TspRI	CASTG	2 cut(s)	228, 850
Vha464I	CTTAAG	1 cut(s)	626
XagI	CCTNNNNNAGG	1 cut(s)	554
XapI	RAATTY	1 cut(s)	471
XspI	CTAG	1 cut(s)	284
ZraI	GACGTC	1 cut(s)	379

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.