Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000334.1

Orthogroup ID

OG0003828

Physical Location & Seq

Genomic Coordinates Reverse (-)

254 .. 1820

Gene Structure 1567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000334.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgatgcagctactgtacacggtgatcttcagccaaatggcgctgattctgacgctgctgttcaagacgcctctgaggaagctggtgattctgggcctggacaagctcaagcggggcaaaggcccaatcgtggtcaaaactgtgggcggtactgtggccgctgtgctcttcgccaacgtctacaatctcaatgagatcaagaaccgaaccaacgagtccggcatgctcaaccctaccgacgaggtcctcatgtccatgaaaatgctcgagatttctctcatggggttttttctgttcctttcactgatgattgatagattgcaccattacataagagaacttcgatttctgaggaaggccatggaggctgcaaagaaacaaaaccaaactactcaagaggagaaaaatgagggccacaagaccttggtacaagagaatgacacattgagggcaaaagttaagaatctggaatctgaatatgagaccaaagaaaagaaggcaaaggtagcagcagctgaggtagaggccctaaggaagcaatctgagggactcctcctggaatatgatcgcttgctggcagagaaccaaaatcttcgggaccagttgaaatcaattgatcagagcatatcacactctgatgacaaaaaaaagacgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04141 ko05165 map04141 map05165

Pfam Domains

Protein Families

Bap31

Protein Analysis

218

Amino Acids

25.0

Weight (kDa)

9.41

Isoelectric Point (pI)

31.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003828)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42570
fragaria_vesca	FvH4_3g01750 FvH4_3g01750 FvH4_6g42950
malus_domestica	MD05G1349500.v1.1 MD09G1110800.v1.1 MD10G1324100.v1.1 MD17G1098700.v1.1
prunus_persica	Prupe.3G215700_v2.0.a1 Prupe.4G018100_v2.0.a1
pyrus_communis	pycom05g31700 pycom09g03330 pycom10g27450 pycom17g09410
rosa_chinensis	RchiOBHm_Chr2g0158931 RchiOBHm_Chr5g0002591
rosa_laevigata	RLG00000021124 RLG00000031045
rosa_multiflora	Rmu_sc0009084.1_g000006 Rmu_ssc0000334.1_g000001
rosa_roxburghii	Rroxscaffold_1G00073260 Rroxscaffold_2G00090870
rosa_rugosa	Rorug02G0473100 Rorug04G0397500
rosa_samantha	Rh2AG539300 Rh2BG552400 Rh2CG522700 Rh2DG562100 Rh5AG021000 Rh5BG023700 Rh5CG023100 Rh5DG022100
rosa_wichuraiana	Rw2G044650 Rw5G001940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	3 cut(s)	112, 147, 159
AcoI	YGGCCR	1 cut(s)	156
AcuI	CTGAAG	1 cut(s)	13
AcyI	GRCGYC	1 cut(s)	68
AfaI	GTAC	3 cut(s)	17, 151, 429
AfiI	CCNNNNNNNGG	1 cut(s)	130
AgsI	TTSAA	2 cut(s)	64, 607
AjnI	CCWGG	2 cut(s)	96, 555
AluBI	AGCT	4 cut(s)	10, 82, 106, 515
AluI	AGCT	4 cut(s)	10, 82, 106, 515
Alw21I	GWGCWC	1 cut(s)	168
Alw26I	GTCTC	1 cut(s)	476
AlwNI	CAGNNNCTG	2 cut(s)	13, 515
Ama87I	CYCGRG	1 cut(s)	266
AoxI	GGCC	6 cut(s)	94, 121, 156, 357, 412, 525
ApeKI	GCWGC	5 cut(s)	7, 55, 368, 509, 512
AspLEI	GCGC	1 cut(s)	43
AspS9I	GGNCC	6 cut(s)	94, 122, 244, 412, 526, 598
AsuHPI	GGTGA	2 cut(s)	34, 97
AvaI	CYCGRG	1 cut(s)	266
AvaII	GGWCC	2 cut(s)	244, 598
AxyI	CCTNAGG	1 cut(s)	530
Bbv12I	GWGCWC	1 cut(s)	168
BbvCI	CCTCAGC	1 cut(s)	516
BbvI	GCAGC	5 cut(s)	19, 42, 355, 521, 524
BciT130I	CCWGG	2 cut(s)	98, 557
BclI	TGATCA	1 cut(s)	616
BcoDI	GTCTC	1 cut(s)	476
BfoI	RGCGCY	1 cut(s)	44
BglI	GCCNNNNNGGC	1 cut(s)	365
BisI	GCNGC	6 cut(s)	8, 56, 159, 369, 510, 513
BlsI	GCNGC	6 cut(s)	9, 57, 160, 370, 511, 514
Bme1390I	CCNGG	2 cut(s)	98, 557
Bme18I	GGWCC	2 cut(s)	244, 598
BmeT110I	CYCGRG	1 cut(s)	266
BmgT120I	GGNCC	6 cut(s)	94, 122, 244, 412, 526, 598
BmiI	GGNNCC	1 cut(s)	599
BmrFI	CCNGG	2 cut(s)	98, 557
Bpu10I	CCTNAGC	1 cut(s)	516
BpuEI	CTTGAG	2 cut(s)	92, 378
BsaHI	GRCGYC	1 cut(s)	68
BsaI	GGTCTC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	360, 423
Bsc4I	CCNNNNNNNGG	1 cut(s)	130
Bse1I	ACTGG	1 cut(s)	601
Bse21I	CCTNAGG	1 cut(s)	530
BseBI	CCWGG	2 cut(s)	98, 557
BseDI	CCNNGG	2 cut(s)	360, 423
BseLI	CCNNNNNNNGG	1 cut(s)	130
BseMII	CTCAG	4 cut(s)	65, 341, 507, 534
BseNI	ACTGG	1 cut(s)	601
BseRI	GAGGAG	2 cut(s)	413, 542
BseXI	GCAGC	5 cut(s)	19, 42, 355, 521, 524
BshFI	GGCC	6 cut(s)	96, 123, 158, 359, 414, 527
BsiHKAI	GWGCWC	1 cut(s)	168
BsiHKCI	CYCGRG	1 cut(s)	266
BsiSI	CCGG	1 cut(s)	219
BslFI	GGGAC	2 cut(s)	561, 611
BslI	CCNNNNNNNGG	1 cut(s)	130
BsmAI	GTCTC	1 cut(s)	476
BsmFI	GGGAC	2 cut(s)	561, 611
BsnI	GGCC	6 cut(s)	96, 123, 158, 359, 414, 527
Bso31I	GGTCTC	1 cut(s)	476
BsoBI	CYCGRG	1 cut(s)	266
Bsp1286I	GDGCHC	1 cut(s)	168
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	24, 195, 565, 616
Bsp19I	CCATGG	1 cut(s)	360
BspACI	CCGC	3 cut(s)	112, 147, 159
BspANI	GGCC	6 cut(s)	96, 123, 158, 359, 414, 527
BspCNI	CTCAG	4 cut(s)	66, 342, 508, 535
BspLI	GGNNCC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	173
BspTNI	GGTCTC	1 cut(s)	476
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	1 cut(s)	601
BssECI	CCNNGG	2 cut(s)	360, 423
BssMI	GATC	4 cut(s)	24, 195, 565, 616
BssNI	GRCGYC	1 cut(s)	68
BssT1I	CCWWGG	2 cut(s)	360, 423
Bst2UI	CCWGG	2 cut(s)	98, 557
Bst4CI	ACNGT	4 cut(s)	15, 22, 142, 154
Bst6I	CTCTTC	1 cut(s)	173
BstACI	GRCGYC	1 cut(s)	68
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	3 cut(s)	224, 572, 576
BstDEI	CTNAG	5 cut(s)	74, 350, 516, 530, 543
BstDSI	CCRYGG	1 cut(s)	360
BstH2I	RGCGCY	1 cut(s)	44
BstHHI	GCGC	1 cut(s)	43
BstKTI	GATC	4 cut(s)	27, 198, 568, 619
BstMAI	GTCTC	1 cut(s)	476
BstMBI	GATC	4 cut(s)	24, 195, 565, 616
BstMWI	GCNNNNNNNGC	2 cut(s)	365, 506
BstNI	CCWGG	2 cut(s)	98, 557
BstNSI	RCATGY	1 cut(s)	226
BstSCI	CCNGG	2 cut(s)	96, 555
BstV1I	GCAGC	5 cut(s)	19, 42, 355, 521, 524
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	6 cut(s)	96, 123, 158, 359, 414, 527
BtgI	CCRYGG	1 cut(s)	360
BtsIMutI	CAGTG	1 cut(s)	302
Cac8I	GCNNGC	3 cut(s)	224, 572, 576
CaiI	CAGNNNCTG	2 cut(s)	13, 515
CfoI	GCGC	1 cut(s)	43
Cfr13I	GGNCC	6 cut(s)	94, 122, 244, 412, 526, 598
CseI	GACGC	2 cut(s)	61, 76
Csp6I	GTAC	3 cut(s)	16, 150, 428
CviAII	CATG	5 cut(s)	223, 250, 256, 280, 361
CviQI	GTAC	3 cut(s)	16, 150, 428
DdeI	CTNAG	5 cut(s)	74, 350, 516, 530, 543
DpnI	GATC	4 cut(s)	26, 197, 567, 618
DpnII	GATC	4 cut(s)	24, 195, 565, 616
EaeI	YGGCCR	1 cut(s)	156
Eam1104I	CTCTTC	1 cut(s)	173
EarI	CTCTTC	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	360, 423
Eco31I	GGTCTC	1 cut(s)	476
Eco47I	GGWCC	2 cut(s)	244, 598
Eco57I	CTGAAG	1 cut(s)	13
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	266
EcoO109I	RGGNCCY	2 cut(s)	244, 526
EcoRII	CCWGG	2 cut(s)	96, 555
EcoT14I	CCWWGG	2 cut(s)	360, 423
ErhI	CCWWGG	2 cut(s)	360, 423
FaeI	CATG	5 cut(s)	226, 253, 259, 283, 364
FaiI	YATR	9 cut(s)	224, 251, 257, 281, 332, 362, 480, 564, 626
FaqI	GGGAC	2 cut(s)	561, 611
FatI	CATG	5 cut(s)	222, 249, 255, 279, 360
FauI	CCCGC	1 cut(s)	105
FbaI	TGATCA	1 cut(s)	616
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	6 cut(s)	8, 56, 159, 369, 510, 513
Fsp4HI	GCNGC	6 cut(s)	8, 56, 159, 369, 510, 513
GlaI	GCGC	1 cut(s)	42
GluI	GCNGC	6 cut(s)	8, 56, 159, 369, 510, 513
HaeII	RGCGCY	1 cut(s)	44
HaeIII	GGCC	6 cut(s)	96, 123, 158, 359, 414, 527
HapII	CCGG	1 cut(s)	219
HgaI	GACGC	2 cut(s)	61, 76
HhaI	GCGC	1 cut(s)	43
Hin1I	GRCGYC	1 cut(s)	68
Hin1II	CATG	5 cut(s)	226, 253, 259, 283, 364
Hin6I	GCGC	1 cut(s)	41
HinP1I	GCGC	1 cut(s)	41
HinfI	GANTC	6 cut(s)	46, 88, 215, 463, 470, 549
HpaII	CCGG	1 cut(s)	219
HphI	GGTGA	2 cut(s)	34, 97
Hpy166II	GTNNAC	2 cut(s)	18, 181
Hpy188I	TCNGA	7 cut(s)	51, 75, 351, 475, 544, 621, 637
Hpy188III	TCNNGA	6 cut(s)	64, 199, 268, 395, 467, 596
Hpy8I	GTNNAC	2 cut(s)	18, 181
Hpy99I	CGWCG	1 cut(s)	242
HpyAV	CCTTC	2 cut(s)	349, 490
HpyCH4III	ACNGT	4 cut(s)	15, 22, 142, 154
HpyCH4IV	ACGT	2 cut(s)	177, 653
HpyCH4V	TGCA	3 cut(s)	7, 322, 371
HpyF10VI	GCNNNNNNNGC	2 cut(s)	365, 506
HpyF3I	CTNAG	5 cut(s)	74, 350, 516, 530, 543
HpySE526I	ACGT	2 cut(s)	177, 653
Hsp92I	GRCGYC	1 cut(s)	68
Hsp92II	CATG	5 cut(s)	226, 253, 259, 283, 364
HspAI	GCGC	1 cut(s)	41
Ksp22I	TGATCA	1 cut(s)	616
Kzo9I	GATC	4 cut(s)	24, 195, 565, 616
LguI	GCTCTTC	1 cut(s)	173
Lsp1109I	GCAGC	5 cut(s)	19, 42, 355, 521, 524
MaeII	ACGT	2 cut(s)	177, 653
MalI	GATC	4 cut(s)	26, 197, 567, 618
MboI	GATC	4 cut(s)	24, 195, 565, 616
MboII	GAAGA	3 cut(s)	19, 160, 584
MfeI	CAATTG	1 cut(s)	612
MhlI	GDGCHC	1 cut(s)	168
MluCI	AATT	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	224, 543
MseI	TTAA	1 cut(s)	459
MslI	CAYNNNNRTG	3 cut(s)	254, 260, 636
MspA1I	CMGCKG	2 cut(s)	161, 515
MspI	CCGG	1 cut(s)	219
MspR9I	CCNGG	2 cut(s)	98, 557
MunI	CAATTG	1 cut(s)	612
MvaI	CCWGG	2 cut(s)	98, 557
MwoI	GCNNNNNNNGC	2 cut(s)	365, 506
NcoI	CCATGG	1 cut(s)	360
NdeII	GATC	4 cut(s)	24, 195, 565, 616
NlaIII	CATG	5 cut(s)	226, 253, 259, 283, 364
NlaIV	GGNNCC	1 cut(s)	599
NspI	RCATGY	1 cut(s)	226
PaeI	GCATGC	1 cut(s)	226
PaeR7I	CTCGAG	1 cut(s)	266
PciSI	GCTCTTC	1 cut(s)	173
PfeI	GAWTC	4 cut(s)	46, 88, 463, 470
PflFI	GACNNNGTC	1 cut(s)	242
PfoI	TCCNGGA	1 cut(s)	555
PkrI	GCNGC	6 cut(s)	9, 57, 160, 370, 511, 514
PleI	GAGTC	2 cut(s)	223, 543
PpsI	GAGTC	2 cut(s)	223, 543
PpuMI	RGGWCCY	1 cut(s)	244
Psp5II	RGGWCCY	1 cut(s)	244
Psp6I	CCWGG	2 cut(s)	96, 555
PspGI	CCWGG	2 cut(s)	96, 555
PspN4I	GGNNCC	1 cut(s)	599
PspPI	GGNCC	6 cut(s)	94, 122, 244, 412, 526, 598
PspPPI	RGGWCCY	1 cut(s)	244
PstNI	CAGNNNCTG	2 cut(s)	13, 515
PsyI	GACNNNGTC	1 cut(s)	242
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	3 cut(s)	17, 151, 429
RsaNI	GTAC	3 cut(s)	16, 150, 428
RseI	CAYNNNNRTG	3 cut(s)	254, 260, 636
SapI	GCTCTTC	1 cut(s)	173
SaqAI	TTAA	1 cut(s)	459
SatI	GCNGC	6 cut(s)	8, 56, 159, 369, 510, 513
Sau3AI	GATC	4 cut(s)	24, 195, 565, 616
Sau96I	GGNCC	6 cut(s)	94, 122, 244, 412, 526, 598
SchI	GAGTC	2 cut(s)	224, 543
ScrFI	CCNGG	2 cut(s)	98, 557
SduI	GDGCHC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	266
SinI	GGWCC	2 cut(s)	244, 598
SlaI	CTCGAG	1 cut(s)	266
SmiMI	CAYNNNNRTG	3 cut(s)	254, 260, 636
SmlI	CTYRAG	3 cut(s)	107, 266, 393
SmoI	CTYRAG	3 cut(s)	107, 266, 393
SphI	GCATGC	1 cut(s)	226
Sse9I	AATT	1 cut(s)	612
SsiI	CCGC	3 cut(s)	112, 147, 159
StyD4I	CCNGG	2 cut(s)	96, 555
StyI	CCWWGG	2 cut(s)	360, 423
TaaI	ACNGT	4 cut(s)	15, 22, 142, 154
TaiI	ACGT	2 cut(s)	180, 656
TaqI	TCGA	2 cut(s)	267, 343
TasI	AATT	1 cut(s)	612
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	1 cut(s)	161
TfiI	GAWTC	4 cut(s)	46, 88, 463, 470
Tru1I	TTAA	1 cut(s)	459
Tru9I	TTAA	1 cut(s)	459
TscAI	CASTG	1 cut(s)	309
TseI	GCWGC	5 cut(s)	7, 55, 368, 509, 512
TspDTI	ATGAA	1 cut(s)	272
TspRI	CASTG	1 cut(s)	309
Tth111I	GACNNNGTC	1 cut(s)	242
VpaK11BI	GGWCC	2 cut(s)	244, 598
XceI	RCATGY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	266
XmiI	GTMKAC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.