Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

17197641 .. 17199910

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G42900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGTTGGTGATTACAGAGGACGCTTTAGTAGCCGTCGTTTCTCCGATGACTCTGACGATTCTTCCGACGATGCTTCTTCCGTGGAGGGAGAGACCACTTCTTCCATGTACTCTGCGGGGAAAGAGTATATGGAAACAGAATGGACTAATGAGAAGCATAGTTTATATCTTAAATCTATGGAAGCTTCATTCGTAGATCAGTTATATAACTCGCTCGGAGCTCTCGGGAAGAACGAGAATGTATCCGAATCAACGAGGTTCGGTAGCGGTAGAAAACCGTCTCAAGAACAGTTCAAGGTTCTTCATGATGGTTTCTGGCAGAAGATTAATGTGAAACAACCTGAACATCGGATTAACGGAAGGCACGGTGGTAATTCTCATGAGTTTCTTAGGAGTCCATGGATTAAGCATTATAAACCTTTAGTAAAGACACAAATCCCGGTAACGGATGAGCCCGAAAATCAAGTTGTTAGCAGCTCTAATGGGAAGAAGGGAATATGCAGCTCTGGCTCAGCCTCTAGTCTCAAGCAGCTAAGCTCTCATTCGCGTGACCACGACCAAATCAGCGTTGGAGAAGCAGAGGTATCGGATCAGAACTTTGTTAACGAAGGAATAAAAGGCGAAAACGGAAGCTCGAAGAAGATGAAGACGGTGATGATGAGTGAATCGTCGAGTACCGATCAGGTTGTTCCACTCAATAAACTCTTGCAACATGACGTAAATTTGAAGTCTGTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

246

Amino Acids

27.35

Weight (kDa)

6.15

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	414
AccII	CGCG	1 cut(s)	547
AciI	CCGC	2 cut(s)	116, 267
AclWI	GGATC	1 cut(s)	597
AcsI	RAATTY	1 cut(s)	721
AfaI	GTAC	2 cut(s)	110, 676
AfiI	CCNNNNNNNGG	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	295, 727
AluBI	AGCT	7 cut(s)	185, 221, 477, 504, 532, 537, 633
AluI	AGCT	7 cut(s)	185, 221, 477, 504, 532, 537, 633
Alw21I	GWGCWC	1 cut(s)	223
Alw26I	GTCTC	3 cut(s)	86, 285, 527
AlwI	GGATC	1 cut(s)	597
Ama87I	CYCGRG	1 cut(s)	224
ApeKI	GCWGC	3 cut(s)	474, 501, 529
ApoI	RAATTY	1 cut(s)	721
AseI	ATTAAT	1 cut(s)	327
AsuC2I	CCSGG	1 cut(s)	440
AsuHPI	GGTGA	2 cut(s)	20, 664
AvaI	CYCGRG	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	223, 456
BbsI	GAAGAC	1 cut(s)	653
Bbv12I	GWGCWC	1 cut(s)	223
BbvI	GCAGC	3 cut(s)	486, 513, 541
BccI	CCATC	1 cut(s)	302
BceAI	ACGGC	1 cut(s)	18
BcgI	CGANNNNNNTGC	2 cut(s)	567, 601
BciVI	GTATCC	1 cut(s)	253
BcnI	CCSGG	1 cut(s)	440
BcoDI	GTCTC	3 cut(s)	86, 285, 527
BfaI	CTAG	1 cut(s)	519
BfuI	GTATCC	1 cut(s)	253
BisI	GCNGC	3 cut(s)	475, 502, 530
BlpI	GCTNAGC	2 cut(s)	511, 533
BlsI	GCNGC	3 cut(s)	476, 503, 531
Bme1390I	CCNGG	1 cut(s)	440
BmeT110I	CYCGRG	1 cut(s)	224
BmrFI	CCNGG	1 cut(s)	440
BmsI	GCATC	1 cut(s)	61
BpiI	GAAGAC	1 cut(s)	653
Bpu1102I	GCTNAGC	2 cut(s)	511, 533
BpuEI	CTTGAG	2 cut(s)	267, 509
BpuMI	CCSGG	1 cut(s)	440
BsaI	GGTCTC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	81, 398
Bsc4I	CCNNNNNNNGG	1 cut(s)	445
BseDI	CCNNGG	2 cut(s)	81, 398
BseGI	GGATG	1 cut(s)	454
BseLI	CCNNNNNNNGG	1 cut(s)	445
BseMII	CTCAG	1 cut(s)	525
BseXI	GCAGC	3 cut(s)	486, 513, 541
Bsh1236I	CGCG	1 cut(s)	547
BsiHKAI	GWGCWC	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	224
BsiSI	CCGG	1 cut(s)	440
BslI	CCNNNNNNNGG	1 cut(s)	445
BsmAI	GTCTC	3 cut(s)	86, 285, 527
BsmBI	CGTCTC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	86
BsoBI	CYCGRG	1 cut(s)	224
Bsp1286I	GDGCHC	2 cut(s)	223, 456
Bsp143I	GATC	3 cut(s)	196, 589, 679
Bsp1720I	GCTNAGC	2 cut(s)	511, 533
Bsp19I	CCATGG	1 cut(s)	398
BspACI	CCGC	2 cut(s)	116, 267
BspCNI	CTCAG	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	547
BspHI	TCATGA	2 cut(s)	304, 379
BspPI	GGATC	1 cut(s)	597
BspTNI	GGTCTC	1 cut(s)	86
BssECI	CCNNGG	2 cut(s)	81, 398
BssMI	GATC	3 cut(s)	196, 589, 679
BssT1I	CCWWGG	1 cut(s)	398
Bst4CI	ACNGT	4 cut(s)	279, 291, 368, 652
BstDEI	CTNAG	3 cut(s)	389, 511, 533
BstDSI	CCRYGG	2 cut(s)	81, 398
BstF5I	GGATG	1 cut(s)	454
BstFNI	CGCG	1 cut(s)	547
BstKTI	GATC	3 cut(s)	199, 592, 682
BstMAI	GTCTC	3 cut(s)	86, 285, 527
BstMBI	GATC	3 cut(s)	196, 589, 679
BstMWI	GCNNNNNNNGC	2 cut(s)	30, 507
BstSCI	CCNGG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	547
BstV1I	GCAGC	3 cut(s)	486, 513, 541
BstV2I	GAAGAC	1 cut(s)	653
BsuI	GTATCC	1 cut(s)	253
BtgI	CCRYGG	2 cut(s)	81, 398
BtsCI	GGATG	1 cut(s)	454
CciI	TCATGA	2 cut(s)	304, 379
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	2 cut(s)	109, 675
CviAII	CATG	5 cut(s)	106, 305, 380, 399, 713
CviQI	GTAC	2 cut(s)	109, 675
DdeI	CTNAG	3 cut(s)	389, 511, 533
DpnI	GATC	3 cut(s)	198, 591, 681
DpnII	GATC	3 cut(s)	196, 589, 679
Ecl136II	GAGCTC	1 cut(s)	221
Eco130I	CCWWGG	1 cut(s)	398
Eco24I	GRGCYC	2 cut(s)	223, 456
Eco31I	GGTCTC	1 cut(s)	86
Eco53kI	GAGCTC	1 cut(s)	221
Eco88I	CYCGRG	1 cut(s)	224
EcoICRI	GAGCTC	1 cut(s)	221
EcoT14I	CCWWGG	1 cut(s)	398
EcoT38I	GRGCYC	2 cut(s)	223, 456
ErhI	CCWWGG	1 cut(s)	398
Esp3I	CGTCTC	1 cut(s)	285
FaeI	CATG	5 cut(s)	109, 308, 383, 402, 716
FatI	CATG	5 cut(s)	105, 304, 379, 398, 712
FauI	CCCGC	1 cut(s)	109
Fnu4HI	GCNGC	3 cut(s)	475, 502, 530
FokI	GGATG	1 cut(s)	461
FriOI	GRGCYC	2 cut(s)	223, 456
Fsp4HI	GCNGC	3 cut(s)	475, 502, 530
FspBI	CTAG	1 cut(s)	519
GluI	GCNGC	3 cut(s)	475, 502, 530
HapII	CCGG	1 cut(s)	440
HgaI	GACGC	1 cut(s)	30
Hin1II	CATG	5 cut(s)	109, 308, 383, 402, 716
HincII	GTYRAC	1 cut(s)	604
HindII	GTYRAC	1 cut(s)	604
HindIII	AAGCTT	1 cut(s)	183
HinfI	GANTC	5 cut(s)	50, 59, 248, 394, 665
HpaI	GTTAAC	1 cut(s)	604
HpaII	CCGG	1 cut(s)	440
HphI	GGTGA	2 cut(s)	20, 664
Hpy166II	GTNNAC	1 cut(s)	604
Hpy188I	TCNGA	8 cut(s)	46, 55, 67, 218, 247, 351, 589, 594
Hpy188III	TCNNGA	5 cut(s)	226, 284, 305, 380, 738
Hpy8I	GTNNAC	1 cut(s)	604
Hpy99I	CGWCG	3 cut(s)	39, 71, 673
HpyAV	CCTTC	3 cut(s)	354, 484, 602
HpyCH4III	ACNGT	4 cut(s)	279, 291, 368, 652
HpyCH4IV	ACGT	1 cut(s)	717
HpyCH4V	TGCA	2 cut(s)	501, 709
HpyF10VI	GCNNNNNNNGC	2 cut(s)	30, 507
HpyF3I	CTNAG	3 cut(s)	389, 511, 533
HpySE526I	ACGT	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	109, 308, 383, 402, 716
KspAI	GTTAAC	1 cut(s)	604
Kzo9I	GATC	3 cut(s)	196, 589, 679
LmnI	GCTCC	1 cut(s)	218
LpnPI	CCDG	5 cut(s)	301, 354, 453, 492, 668
Lsp1109I	GCAGC	3 cut(s)	486, 513, 541
LweI	GCATC	1 cut(s)	61
MaeI	CTAG	1 cut(s)	519
MaeII	ACGT	1 cut(s)	717
MaeIII	GTNAC	2 cut(s)	442, 548
MalI	GATC	3 cut(s)	198, 591, 681
MboI	GATC	3 cut(s)	196, 589, 679
MhlI	GDGCHC	2 cut(s)	223, 456
MluCI	AATT	2 cut(s)	373, 721
MlyI	GAGTC	2 cut(s)	44, 403
MmeI	TCCRAC	2 cut(s)	90, 550
MnlI	CCTC	5 cut(s)	11, 79, 249, 526, 574
MseI	TTAA	5 cut(s)	171, 327, 354, 405, 603
MslI	CAYNNNNRTG	1 cut(s)	546
MspI	CCGG	1 cut(s)	440
MspR9I	CCNGG	1 cut(s)	440
MvnI	CGCG	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	30, 507
NciI	CCSGG	1 cut(s)	440
NcoI	CCATGG	1 cut(s)	398
NdeII	GATC	3 cut(s)	196, 589, 679
NlaIII	CATG	5 cut(s)	109, 308, 383, 402, 716
NmuCI	GTSAC	1 cut(s)	548
PagI	TCATGA	2 cut(s)	304, 379
PcsI	WCGNNNNNNNCGW	2 cut(s)	63, 231
PfeI	GAWTC	3 cut(s)	59, 248, 665
PkrI	GCNGC	3 cut(s)	476, 503, 531
PleI	GAGTC	2 cut(s)	44, 402
PpsI	GAGTC	2 cut(s)	44, 402
PshBI	ATTAAT	1 cut(s)	327
PsiI	TTATAA	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	223
RsaI	GTAC	2 cut(s)	110, 676
RsaNI	GTAC	2 cut(s)	109, 675
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	1 cut(s)	223
SaqAI	TTAA	5 cut(s)	171, 327, 354, 405, 603
SatI	GCNGC	3 cut(s)	475, 502, 530
Sau3AI	GATC	3 cut(s)	196, 589, 679
SchI	GAGTC	2 cut(s)	44, 403
ScrFI	CCNGG	1 cut(s)	440
SduI	GDGCHC	2 cut(s)	223, 456
SfaNI	GCATC	1 cut(s)	61
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	2 cut(s)	282, 524
SmoI	CTYRAG	2 cut(s)	282, 524
Sse9I	AATT	2 cut(s)	373, 721
SsiI	CCGC	2 cut(s)	116, 267
SspMI	CTAG	1 cut(s)	519
SstI	GAGCTC	1 cut(s)	223
StyD4I	CCNGG	1 cut(s)	438
StyI	CCWWGG	1 cut(s)	398
TaaI	ACNGT	4 cut(s)	279, 291, 368, 652
TaiI	ACGT	1 cut(s)	720
TaqI	TCGA	2 cut(s)	635, 671
TasI	AATT	2 cut(s)	373, 721
TatI	WGTACW	1 cut(s)	108
TfiI	GAWTC	3 cut(s)	59, 248, 665
Tru1I	TTAA	5 cut(s)	171, 327, 354, 405, 603
Tru9I	TTAA	5 cut(s)	171, 327, 354, 405, 603
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	3 cut(s)	474, 501, 529
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	177, 293, 659
TspGWI	ACGGA	4 cut(s)	70, 372, 461, 642
VspI	ATTAAT	1 cut(s)	327
XapI	RAATTY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	1 cut(s)	566
XspI	CTAG	1 cut(s)	519

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.