Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

65555277 .. 65558632

Gene Structure 3356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG487600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGAGAATTTGAGAGTAAAAGAGTTGCAGATTTCTGGGTTAAGGGGTGGTGAGAGACCACATGAAGTGGACCCTCCTTCGGAATTGGGTACTCCGGCCGCAACAGAAACTATGTCTATTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGTGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATTCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGGTGCTTTCAGCTATATCTTGCTGTGCTTCCCCTTAATTATAGTAGGCAATTTGTGTGTGGCAATATTTTCTTACTCAGCAGCTTTTGATTGGTGTTTTGGTGTACCTCTCCTGTCTCGTATGCTATTTGTTGGCACAATAGATTATCACCCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.51

Weight (kDa)

6.5

Isoelectric Point (pI)

41.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	422
AciI	CCGC	3 cut(s)	99, 461, 579
AclWI	GGATC	3 cut(s)	388, 401, 402
AcoI	YGGCCR	2 cut(s)	96, 280
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	363, 388
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	4 cut(s)	91, 149, 294, 693
AfiI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	122, 262, 434, 486, 493
AluBI	AGCT	4 cut(s)	341, 518, 600, 671
AluI	AGCT	4 cut(s)	341, 518, 600, 671
Alw26I	GTCTC	2 cut(s)	49, 708
AlwI	GGATC	3 cut(s)	388, 401, 402
AoxI	GGCC	2 cut(s)	96, 280
ApeKI	GCWGC	4 cut(s)	272, 306, 458, 668
ApoI	RAATTY	1 cut(s)	7
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	4 cut(s)	62, 347, 383, 728
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	206
BbvI	GCAGC	4 cut(s)	259, 293, 445, 680
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	49, 708
BfuAI	ACCTGC	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	7 cut(s)	99, 273, 307, 459, 462, 580, 669
BlsI	GCNGC	7 cut(s)	100, 274, 308, 460, 463, 581, 670
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	72, 395
BmsI	GCATC	3 cut(s)	176, 549, 571
Bpu14I	TTCGAA	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	195, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 289, 454
Bse1I	ACTGG	2 cut(s)	181, 283
BseDI	CCNNGG	2 cut(s)	195, 389
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BseMII	CTCAG	1 cut(s)	678
BseNI	ACTGG	2 cut(s)	181, 283
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	4 cut(s)	259, 293, 445, 680
BsgI	GTGCAG	2 cut(s)	383, 495
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 282
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BsmAI	GTCTC	2 cut(s)	49, 708
BsnI	GGCC	2 cut(s)	98, 282
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	358, 373, 393, 407
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	99, 461, 579
BspANI	GGCC	2 cut(s)	98, 282
BspCNI	CTCAG	1 cut(s)	677
BspLI	GGNNCC	2 cut(s)	72, 395
BspMI	ACCTGC	1 cut(s)	422
BspPI	GGATC	3 cut(s)	388, 401, 402
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	181, 283
BssECI	CCNNGG	2 cut(s)	195, 389
BssMI	GATC	4 cut(s)	358, 373, 393, 407
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	195
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	311, 419
BstDEI	CTNAG	1 cut(s)	664
BstDSI	CCRYGG	2 cut(s)	195, 389
BstF5I	GGATG	1 cut(s)	242
BstKTI	GATC	4 cut(s)	361, 376, 396, 410
BstMAI	GTCTC	2 cut(s)	49, 708
BstMBI	GATC	4 cut(s)	358, 373, 393, 407
BstMCI	CGRYCG	1 cut(s)	99
BstV1I	GCAGC	4 cut(s)	259, 293, 445, 680
BstX2I	RGATCY	2 cut(s)	393, 407
BstYI	RGATCY	2 cut(s)	393, 407
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	2 cut(s)	98, 282
BtgI	CCRYGG	2 cut(s)	195, 389
BtsCI	GGATG	1 cut(s)	242
BveI	ACCTGC	1 cut(s)	422
Cac8I	GCNNGC	2 cut(s)	311, 419
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	4 cut(s)	90, 148, 293, 692
CviAII	CATG	2 cut(s)	62, 196
CviQI	GTAC	4 cut(s)	90, 148, 293, 692
DdeI	CTNAG	1 cut(s)	664
DpnI	GATC	4 cut(s)	360, 375, 395, 409
DpnII	GATC	4 cut(s)	358, 373, 393, 407
EaeI	YGGCCR	2 cut(s)	96, 280
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	49
Eco47I	GGWCC	1 cut(s)	70
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	363, 388
Eco72I	CACGTG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	2 cut(s)	65, 199
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	2 cut(s)	61, 195
Fnu4HI	GCNGC	7 cut(s)	99, 273, 307, 459, 462, 580, 669
FokI	GGATG	1 cut(s)	229
Fsp4HI	GCNGC	7 cut(s)	99, 273, 307, 459, 462, 580, 669
GluI	GCNGC	7 cut(s)	99, 273, 307, 459, 462, 580, 669
HaeIII	GGCC	2 cut(s)	98, 282
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	2 cut(s)	65, 199
HincII	GTYRAC	1 cut(s)	178
HindII	GTYRAC	1 cut(s)	178
HinfI	GANTC	2 cut(s)	434, 482
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	4 cut(s)	62, 347, 383, 728
Hpy166II	GTNNAC	3 cut(s)	70, 178, 692
Hpy188I	TCNGA	3 cut(s)	82, 358, 407
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	3 cut(s)	70, 178, 692
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	28, 400, 417, 512, 562, 743
HpyF3I	CTNAG	1 cut(s)	664
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	2 cut(s)	65, 199
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	358, 373, 393, 407
Lsp1109I	GCAGC	4 cut(s)	259, 293, 445, 680
LweI	GCATC	3 cut(s)	176, 549, 571
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	1 cut(s)	228
MalI	GATC	4 cut(s)	360, 375, 395, 409
MboI	GATC	4 cut(s)	358, 373, 393, 407
MboII	GAAGA	4 cut(s)	342, 368, 485, 505
MflI	RGATCY	2 cut(s)	393, 407
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	8 cut(s)	7, 83, 257, 262, 322, 501, 624, 637
MluNI	TGGCCA	1 cut(s)	282
MnlI	CCTC	4 cut(s)	84, 293, 326, 705
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	5 cut(s)	41, 177, 288, 537, 623
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	358, 373, 393, 407
NlaIII	CATG	2 cut(s)	65, 199
NlaIV	GGNNCC	2 cut(s)	72, 395
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	527
PaqCI	CACCTGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	434, 482
PkrI	GCNGC	7 cut(s)	100, 274, 308, 460, 463, 581, 670
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	72, 395
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	393, 407
RsaI	GTAC	4 cut(s)	91, 149, 294, 693
RsaNI	GTAC	4 cut(s)	90, 148, 293, 692
SaqAI	TTAA	5 cut(s)	41, 177, 288, 537, 623
SatI	GCNGC	7 cut(s)	99, 273, 307, 459, 462, 580, 669
Sau3AI	GATC	4 cut(s)	358, 373, 393, 407
Sau96I	GGNCC	1 cut(s)	70
SfaNI	GCATC	3 cut(s)	176, 549, 571
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	1 cut(s)	70
Sse9I	AATT	8 cut(s)	7, 83, 257, 262, 322, 501, 624, 637
SsiI	CCGC	3 cut(s)	99, 461, 579
SspI	AATATT	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	2 cut(s)	298, 527
TasI	AATT	8 cut(s)	7, 83, 257, 262, 322, 501, 624, 637
TauI	GCSGC	3 cut(s)	101, 464, 582
TfiI	GAWTC	2 cut(s)	434, 482
Tru1I	TTAA	5 cut(s)	41, 177, 288, 537, 623
Tru9I	TTAA	5 cut(s)	41, 177, 288, 537, 623
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	4 cut(s)	272, 306, 458, 668
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	1 cut(s)	78
TspGWI	ACGGA	1 cut(s)	378
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	7
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.