Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

5642282 .. 5644900

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1082300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGGATAATTTCAGTGGGGGAGAGTTGAAGGTTTCTATGCAGACCGGTGAGCGGCTGGGCGGGGTTGCTGCGGCGGCGGAGGACCCTCCTTCCGACGGCTTGGGTATGGCGGCTCGGACTGAAACTATGTCTACAGAATGGACGGATGAGAAACACAGCATGTACCTCAAATCCATGGAAGCATCATTTGTTAACCAGTTGTATAATTCCATGGATTCGCGTGGTCAGAACTCGCAGAAGGGGAATTCATCGCATCCGAAATTGTCAAGGCAAAAGCAACCCCAGTTTAATTCTCGTGCCCCTTCCGGCCGGTTTAAGGTACTAAGAGGCGGTTGCTGGCAGAAAATCAATTTTGTAAGAGCTGAGGCTGAAGCAAGGGCAGATGAAGATCTTCTGGCGAATCCGTGGTTCCTGCACTTTAGATCTGCCGGCAAGCCCAAAGATTTTGAATCTCCCATTGTCCAAGAACTGGATGCATCACTATGTGAAGAAGTCGAAGTCGATTCAAGTAGGAAGAAGGAAATGACGGGTGCACCAGCTACATGCTCGAAGCAGTTTCATGCATCTCACTCTCAGTTGCGCCATCAGGATATGGTTGGAAGCAACACAGAGGTCTCGGATCAGAATTTTGTCGATGAAGATATTAAAGAAAAAGCAGTTGGTTCATGTGATGGTAAGAGGATGAAAACTCTTATACTTAATACCTCAAGTAACGATCAGGTTGTTCCACTCCGCAAGCCTGCCGGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

251

Amino Acids

27.59

Weight (kDa)

6.11

Isoelectric Point (pI)

36.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	746
AccB1I	GGYRCC	1 cut(s)	746
AccB7I	CCANNNNNTGG	1 cut(s)	469
AccBSI	CCGCTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	1 cut(s)	220
AciI	CCGC	8 cut(s)	52, 60, 71, 74, 77, 110, 330, 733
AclWI	GGATC	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	307
AcsI	RAATTY	2 cut(s)	244, 625
AcuI	CTGAAG	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	485
AfaI	GTAC	3 cut(s)	164, 321, 748
AfiI	CCNNNNNNNGG	4 cut(s)	51, 95, 316, 469
AgeI	ACCGGT	1 cut(s)	44
AgsI	TTSAA	3 cut(s)	28, 449, 507
AjuI	GAANNNNNNNTTGG	2 cut(s)	642, 674
AluBI	AGCT	2 cut(s)	362, 539
AluI	AGCT	2 cut(s)	362, 539
Alw21I	GWGCWC	1 cut(s)	535
Alw26I	GTCTC	1 cut(s)	619
Alw44I	GTGCAC	1 cut(s)	531
AlwI	GGATC	1 cut(s)	627
AoxI	GGCC	1 cut(s)	307
ApaLI	GTGCAC	1 cut(s)	531
ApeKI	GCWGC	1 cut(s)	68
ApoI	RAATTY	2 cut(s)	244, 625
AsiGI	ACCGGT	1 cut(s)	44
Asp700I	GAANNNNTTC	1 cut(s)	390
Asp718I	GGTACC	1 cut(s)	746
AspLEI	GCGC	1 cut(s)	582
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	301, 535
BanI	GGYRCC	1 cut(s)	746
BauI	CACGAG	1 cut(s)	294
Bbv12I	GWGCWC	1 cut(s)	535
BbvCI	CCTCAGC	1 cut(s)	363
BbvI	GCAGC	1 cut(s)	55
BccI	CCATC	2 cut(s)	591, 665
BceAI	ACGGC	1 cut(s)	112
BcoDI	GTCTC	1 cut(s)	619
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	2 cut(s)	388, 422
BisI	GCNGC	5 cut(s)	53, 69, 72, 75, 111
BlsI	GCNGC	5 cut(s)	54, 70, 73, 76, 112
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	3 cut(s)	84, 410, 748
BmrI	ACTGGG	1 cut(s)	277
BmsI	GCATC	5 cut(s)	191, 262, 463, 485, 572
BmuI	ACTGGG	1 cut(s)	277
Bpu10I	CCTNAGC	1 cut(s)	363
BpuEI	CTTGAG	1 cut(s)	691
BsaBI	GATNNNNATC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	3 cut(s)	174, 210, 404
BsaWI	WCCGGW	1 cut(s)	44
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 95, 316, 469
Bse118I	RCCGGY	4 cut(s)	44, 309, 428, 743
Bse1I	ACTGG	3 cut(s)	196, 283, 474
Bse8I	GATNNNNATC	1 cut(s)	387
BseDI	CCNNGG	3 cut(s)	174, 210, 404
BseGI	GGATG	4 cut(s)	151, 253, 478, 687
BseJI	GATNNNNATC	1 cut(s)	387
BseLI	CCNNNNNNNGG	4 cut(s)	51, 95, 316, 469
BseMII	CTCAG	2 cut(s)	354, 587
BseNI	ACTGG	3 cut(s)	196, 283, 474
BseSI	GKGCMC	2 cut(s)	301, 535
BseX3I	CGGCCG	1 cut(s)	307
BseXI	GCAGC	1 cut(s)	55
BseYI	CCCAGC	1 cut(s)	55
BsgI	GTGCAG	1 cut(s)	398
Bsh1236I	CGCG	1 cut(s)	220
Bsh1285I	CGRYCG	1 cut(s)	310
BshFI	GGCC	1 cut(s)	309
BshNI	GGYRCC	1 cut(s)	746
BshTI	ACCGGT	1 cut(s)	44
BsiEI	CGRYCG	1 cut(s)	310
BsiHKAI	GWGCWC	1 cut(s)	535
BsiSI	CCGG	5 cut(s)	45, 306, 310, 429, 744
BslI	CCNNNNNNNGG	4 cut(s)	51, 95, 316, 469
BsmAI	GTCTC	1 cut(s)	619
BsnI	GGCC	1 cut(s)	309
Bso31I	GGTCTC	1 cut(s)	619
Bsp1286I	GDGCHC	2 cut(s)	301, 535
Bsp143I	GATC	4 cut(s)	388, 422, 619, 715
Bsp19I	CCATGG	2 cut(s)	174, 210
BspACI	CCGC	8 cut(s)	52, 60, 71, 74, 77, 110, 330, 733
BspANI	GGCC	1 cut(s)	309
BspCNI	CTCAG	2 cut(s)	355, 586
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	84, 410, 748
BspPI	GGATC	1 cut(s)	627
BspT107I	GGYRCC	1 cut(s)	746
BspTNI	GGTCTC	1 cut(s)	619
BsrBI	CCGCTC	1 cut(s)	52
BsrFI	RCCGGY	4 cut(s)	44, 309, 428, 743
BsrI	ACTGG	3 cut(s)	196, 283, 474
BssAI	RCCGGY	4 cut(s)	44, 309, 428, 743
BssECI	CCNNGG	3 cut(s)	174, 210, 404
BssMI	GATC	4 cut(s)	388, 422, 619, 715
BssSI	CACGAG	1 cut(s)	294
BssT1I	CCWWGG	2 cut(s)	174, 210
Bst2BI	CACGAG	1 cut(s)	294
BstC8I	GCNNGC	5 cut(s)	338, 430, 434, 737, 741
BstDEI	CTNAG	3 cut(s)	323, 363, 573
BstDSI	CCRYGG	3 cut(s)	174, 210, 404
BstF5I	GGATG	4 cut(s)	151, 253, 478, 687
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	582
BstKTI	GATC	4 cut(s)	391, 425, 622, 718
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	4 cut(s)	388, 422, 619, 715
BstMCI	CGRYCG	1 cut(s)	310
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstNSI	RCATGY	2 cut(s)	163, 546
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	301, 535
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	55
BstX2I	RGATCY	2 cut(s)	388, 422
BstYI	RGATCY	2 cut(s)	388, 422
BstZI	CGGCCG	1 cut(s)	307
BsuRI	GGCC	1 cut(s)	309
BtgI	CCRYGG	3 cut(s)	174, 210, 404
BtgZI	GCGATG	1 cut(s)	234
BtsCI	GGATG	4 cut(s)	151, 253, 478, 687
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	5 cut(s)	338, 430, 434, 737, 741
CfoI	GCGC	1 cut(s)	582
Cfr10I	RCCGGY	4 cut(s)	44, 309, 428, 743
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	163, 320, 747
CspAI	ACCGGT	1 cut(s)	44
CviAII	CATG	6 cut(s)	160, 175, 211, 543, 560, 666
CviJI	RGCY	9 cut(s)	55, 99, 113, 309, 362, 368, 436, 539, 739
CviKI_1	RGCY	9 cut(s)	55, 99, 113, 309, 362, 368, 436, 539, 739
CviQI	GTAC	3 cut(s)	163, 320, 747
DdeI	CTNAG	3 cut(s)	323, 363, 573
DpnI	GATC	4 cut(s)	390, 424, 621, 717
DpnII	GATC	4 cut(s)	388, 422, 619, 715
DraIII	CACNNNGTG	1 cut(s)	485
EaeI	YGGCCR	1 cut(s)	307
EagI	CGGCCG	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	92
EclXI	CGGCCG	1 cut(s)	307
Eco130I	CCWWGG	2 cut(s)	174, 210
Eco31I	GGTCTC	1 cut(s)	619
Eco47I	GGWCC	1 cut(s)	82
Eco52I	CGGCCG	1 cut(s)	307
Eco57I	CTGAAG	1 cut(s)	390
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	174, 210
EcoT22I	ATGCAT	2 cut(s)	478, 565
ErhI	CCWWGG	2 cut(s)	174, 210
FaeI	CATG	6 cut(s)	163, 178, 214, 546, 563, 669
FatI	CATG	6 cut(s)	159, 174, 210, 542, 559, 665
FauI	CCCGC	1 cut(s)	53
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	53, 69, 72, 75, 111
FokI	GGATG	4 cut(s)	158, 240, 485, 694
Fsp4HI	GCNGC	5 cut(s)	53, 69, 72, 75, 111
GlaI	GCGC	1 cut(s)	581
GluI	GCNGC	5 cut(s)	53, 69, 72, 75, 111
GsaI	CCCAGC	1 cut(s)	59
HaeIII	GGCC	1 cut(s)	309
HapII	CCGG	5 cut(s)	45, 306, 310, 429, 744
HhaI	GCGC	1 cut(s)	582
Hin1II	CATG	6 cut(s)	163, 178, 214, 546, 563, 669
Hin6I	GCGC	1 cut(s)	580
HinP1I	GCGC	1 cut(s)	580
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	4 cut(s)	215, 400, 449, 503
HpaI	GTTAAC	1 cut(s)	193
HpaII	CCGG	5 cut(s)	45, 306, 310, 429, 744
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	3 cut(s)	132, 193, 533
Hpy188I	TCNGA	6 cut(s)	94, 117, 228, 258, 619, 624
Hpy188III	TCNNGA	1 cut(s)	587
Hpy8I	GTNNAC	3 cut(s)	132, 193, 533
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	5 cut(s)	22, 99, 232, 312, 511
HpyCH4V	TGCA	5 cut(s)	40, 415, 476, 533, 563
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	323, 363, 573
Hsp92II	CATG	6 cut(s)	163, 178, 214, 546, 563, 669
HspAI	GCGC	1 cut(s)	580
KpnI	GGTACC	1 cut(s)	750
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
KspAI	GTTAAC	1 cut(s)	193
Kzo9I	GATC	4 cut(s)	388, 422, 619, 715
Lsp1109I	GCAGC	1 cut(s)	55
LweI	GCATC	5 cut(s)	191, 262, 463, 485, 572
MaeIII	GTNAC	1 cut(s)	710
MalI	GATC	4 cut(s)	390, 424, 621, 717
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	4 cut(s)	388, 422, 619, 715
MboII	GAAGA	5 cut(s)	383, 398, 500, 526, 650
MflI	RGATCY	2 cut(s)	388, 422
MhlI	GDGCHC	2 cut(s)	301, 535
MluCI	AATT	7 cut(s)	7, 205, 244, 260, 289, 349, 625
MmeI	TCCRAC	2 cut(s)	117, 577
MnlI	CCTC	8 cut(s)	73, 96, 176, 320, 358, 604, 672, 715
Mph1103I	ATGCAT	2 cut(s)	478, 565
MroNI	GCCGGC	1 cut(s)	428
MroXI	GAANNNNTTC	1 cut(s)	390
MseI	TTAA	5 cut(s)	192, 288, 315, 645, 699
MslI	CAYNNNNRTG	1 cut(s)	481
MspI	CCGG	5 cut(s)	45, 306, 310, 429, 744
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	1 cut(s)	74
NaeI	GCCGGC	1 cut(s)	430
NcoI	CCATGG	2 cut(s)	174, 210
NdeII	GATC	4 cut(s)	388, 422, 619, 715
NgoMIV	GCCGGC	1 cut(s)	428
NlaIII	CATG	6 cut(s)	163, 178, 214, 546, 563, 669
NlaIV	GGNNCC	3 cut(s)	84, 410, 748
NsiI	ATGCAT	2 cut(s)	478, 565
NspI	RCATGY	2 cut(s)	163, 546
PdiI	GCCGGC	1 cut(s)	430
PdmI	GAANNNNTTC	1 cut(s)	390
PfeI	GAWTC	4 cut(s)	215, 400, 449, 503
PflMI	CCANNNNNTGG	1 cut(s)	469
PinAI	ACCGGT	1 cut(s)	44
PkrI	GCNGC	5 cut(s)	54, 70, 73, 76, 112
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspFI	CCCAGC	1 cut(s)	55
PspN4I	GGNNCC	3 cut(s)	84, 410, 748
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	388, 422
RsaI	GTAC	3 cut(s)	164, 321, 748
RsaNI	GTAC	3 cut(s)	163, 320, 747
RseI	CAYNNNNRTG	1 cut(s)	481
SaqAI	TTAA	5 cut(s)	192, 288, 315, 645, 699
SatI	GCNGC	5 cut(s)	53, 69, 72, 75, 111
Sau3AI	GATC	4 cut(s)	388, 422, 619, 715
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	301, 535
SetI	ASST	9 cut(s)	33, 168, 321, 364, 541, 615, 707, 723, 752
SfaNI	GCATC	5 cut(s)	191, 262, 463, 485, 572
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	481
SmlI	CTYRAG	1 cut(s)	706
SmoI	CTYRAG	1 cut(s)	706
Sse9I	AATT	7 cut(s)	7, 205, 244, 260, 289, 349, 625
SsiI	CCGC	8 cut(s)	52, 60, 71, 74, 77, 110, 330, 733
StyI	CCWWGG	2 cut(s)	174, 210
TaqI	TCGA	4 cut(s)	495, 501, 548, 633
TasI	AATT	7 cut(s)	7, 205, 244, 260, 289, 349, 625
TauI	GCSGC	4 cut(s)	55, 74, 77, 113
TfiI	GAWTC	4 cut(s)	215, 400, 449, 503
Tru1I	TTAA	5 cut(s)	192, 288, 315, 645, 699
Tru9I	TTAA	5 cut(s)	192, 288, 315, 645, 699
TscAI	CASTG	1 cut(s)	19
TseI	GCWGC	1 cut(s)	68
TspDTI	ATGAA	6 cut(s)	237, 399, 548, 651, 654, 698
TspGWI	ACGGA	2 cut(s)	158, 393
TspRI	CASTG	1 cut(s)	19
Van91I	CCANNNNNTGG	1 cut(s)	469
VneI	GTGCAC	1 cut(s)	531
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	2 cut(s)	244, 625
XceI	RCATGY	2 cut(s)	163, 546
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	390
Zsp2I	ATGCAT	2 cut(s)	478, 565

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.