Rorug06G0362800

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0004506
Physical Location & Seq
Forward (+)
51096800 .. 51097504
705 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0362800.1

Sequence Viewer

Length: 705 bp
ATGCTAGACCATGCTATACATCTCCCACAAGATCGGTTTGAGCATCTTCTCATGGTGTTGTGGGCGTTATGGAAAAACAAAAATGATAAGTTGTGGAATGATACGTGTCAAACTGCATCTGACATCCTTTTGAGTTCAACAACTTGGTTGAAGGAGTTTCAAAGTGCAAGACAGTTTGAGACAAAGCCCAAGCAAGCCAAGACGAAGCAAACCTGGAAGCCAGCACATCATGGTAAGTGGAAACTAAATGTTGATGGGAGTTTCCTACCTAGTCGTACAGTTGGGAGCCTGGGAGGCGTCATTCGTGATGAGACTGGACAGTTCAAGGCAGCCTTCGCGCTGCAGACGTCAAATGCTGCATCAACCAAACATGTGGAGCTCTTAGCTCTTAAGGAAGGCCTAAAGCTGGTACGAACCCTTCAGCTAGAACATGTAATAGTCGAAACTGATTGTCAAGCGGCAACAAATGATATACTTAATTCCAATCATGCTTTCATAGCAGAAGGAGGCTTAATTGATGACATAAAGGTTAGTCTACGGAATATGCCTACTGTATCCATTGTTTTTGCTCCTAGAACATGTAATCATGTGGCTCATAGACTAGCCAATATAGGTTATGAAGACAGGCCAAATATGGTCTGGTTTGACAGGGCTCCAGAGAGCATTCTGGAGCTCCTTGCATACGATTGTAACCTGCCCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

234

Amino Acids

26.41

Weight (kDa)

7.15

Isoelectric Point (pI)

31.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 83 - 203 1.5e-23 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 350
AccI GTMKAC 1 cut(s) 535
AccII CGCG 1 cut(s) 338
AciI CCGC 1 cut(s) 458
AcuI CTGAAG 1 cut(s) 404
AcyI GRCGYC 2 cut(s) 297, 347
AfaI GTAC 2 cut(s) 277, 411
AfiI CCNNNNNNNGG 1 cut(s) 406
AflII CTTAAG 1 cut(s) 389
AflIII ACRYGT 4 cut(s) 104, 370, 430, 578
AgsI TTSAA 4 cut(s) 138, 151, 161, 325
AjnI CCWGG 2 cut(s) 212, 288
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AluBI AGCT 5 cut(s) 379, 386, 406, 424, 673
AluI AGCT 5 cut(s) 379, 386, 406, 424, 673
Alw21I GWGCWC 2 cut(s) 381, 675
Alw26I GTCTC 2 cut(s) 173, 305
AoxI GGCC 2 cut(s) 397, 626
ApeKI GCWGC 3 cut(s) 329, 340, 356
AspLEI GCGC 1 cut(s) 340
BanII GRGCYC 3 cut(s) 381, 655, 675
BarI GAAGNNNNNNTAC 2 cut(s) 402, 434
BbsI GAAGAC 1 cut(s) 627
Bbv12I GWGCWC 2 cut(s) 381, 675
BbvI GCAGC 3 cut(s) 327, 341, 343
BccI CCATC 1 cut(s) 248
BciT130I CCWGG 2 cut(s) 214, 290
BciVI GTATCC 1 cut(s) 565
BcoDI GTCTC 2 cut(s) 173, 305
BfaI CTAG 5 cut(s) 5, 270, 425, 573, 602
BfmI CTRYAG 1 cut(s) 341
BfrI CTTAAG 1 cut(s) 389
BfuI GTATCC 1 cut(s) 565
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 4 cut(s) 330, 341, 357, 459
BlsI GCNGC 4 cut(s) 331, 342, 358, 460
Bme1390I CCNGG 2 cut(s) 214, 290
BmiI GGNNCC 2 cut(s) 287, 654
BmrFI CCNGG 2 cut(s) 214, 290
BmrI ACTGGG 1 cut(s) 693
BmsI GCATC 3 cut(s) 52, 125, 368
BmuI ACTGGG 1 cut(s) 693
BpiI GAAGAC 1 cut(s) 627
BpmI CTGGAG 2 cut(s) 639, 689
BsaAI YACGTR 1 cut(s) 105
BsaHI GRCGYC 2 cut(s) 297, 347
BsaJI CCNNGG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 1 cut(s) 406
Bse1I ACTGG 2 cut(s) 319, 699
BseBI CCWGG 2 cut(s) 214, 290
BseDI CCNNGG 1 cut(s) 289
BseGI GGATG 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 406
BseNI ACTGG 2 cut(s) 319, 699
BseXI GCAGC 3 cut(s) 327, 341, 343
Bsh1236I CGCG 1 cut(s) 338
BshFI GGCC 2 cut(s) 399, 628
BsiHKAI GWGCWC 2 cut(s) 381, 675
BslI CCNNNNNNNGG 1 cut(s) 406
BsmAI GTCTC 2 cut(s) 173, 305
BsmI GAATGC 1 cut(s) 663
BsnI GGCC 2 cut(s) 399, 628
Bsp1286I GDGCHC 3 cut(s) 381, 655, 675
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 458
BspANI GGCC 2 cut(s) 399, 628
BspFNI CGCG 1 cut(s) 338
BspLI GGNNCC 2 cut(s) 287, 654
BspMAI CTGCAG 1 cut(s) 345
BspTI CTTAAG 1 cut(s) 389
BsrI ACTGG 2 cut(s) 319, 699
BssECI CCNNGG 1 cut(s) 289
BssMI GATC 1 cut(s) 31
BssNI GRCGYC 2 cut(s) 297, 347
Bst2UI CCWGG 2 cut(s) 214, 290
Bst4CI ACNGT 4 cut(s) 174, 280, 321, 553
BstACI GRCGYC 2 cut(s) 297, 347
BstAFI CTTAAG 1 cut(s) 389
BstBAI YACGTR 1 cut(s) 105
BstC8I GCNNGC 2 cut(s) 195, 222
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 123
BstFNI CGCG 1 cut(s) 338
BstHHI GCGC 1 cut(s) 340
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 2 cut(s) 173, 305
BstMBI GATC 1 cut(s) 31
BstMWI GCNNNNNNNGC 3 cut(s) 294, 335, 497
BstNI CCWGG 2 cut(s) 214, 290
BstNSI RCATGY 3 cut(s) 374, 434, 582
BstSCI CCNGG 2 cut(s) 212, 288
BstSFI CTRYAG 1 cut(s) 341
BstUI CGCG 1 cut(s) 338
BstV1I GCAGC 3 cut(s) 327, 341, 343
BstV2I GAAGAC 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 373
BsuI GTATCC 1 cut(s) 565
BsuRI GGCC 2 cut(s) 399, 628
BtsCI GGATG 1 cut(s) 123
Cac8I GCNNGC 2 cut(s) 195, 222
CfoI GCGC 1 cut(s) 340
CseI GACGC 1 cut(s) 286
Csp6I GTAC 2 cut(s) 276, 410
CviAII CATG 8 cut(s) 11, 52, 230, 371, 431, 488, 579, 587
CviQI GTAC 2 cut(s) 276, 410
DdeI CTNAG 1 cut(s) 382
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Ecl136II GAGCTC 2 cut(s) 379, 673
Eco147I AGGCCT 1 cut(s) 399
Eco24I GRGCYC 3 cut(s) 381, 655, 675
Eco53kI GAGCTC 2 cut(s) 379, 673
Eco57I CTGAAG 1 cut(s) 404
EcoICRI GAGCTC 2 cut(s) 379, 673
EcoRII CCWGG 2 cut(s) 212, 288
EcoT38I GRGCYC 3 cut(s) 381, 655, 675
FaeI CATG 8 cut(s) 14, 55, 233, 374, 434, 491, 582, 590
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FatI CATG 8 cut(s) 10, 51, 229, 370, 430, 487, 578, 586
FblI GTMKAC 1 cut(s) 535
Fnu4HI GCNGC 4 cut(s) 330, 341, 357, 459
FokI GGATG 1 cut(s) 110
FriOI GRGCYC 3 cut(s) 381, 655, 675
Fsp4HI GCNGC 4 cut(s) 330, 341, 357, 459
FspBI CTAG 5 cut(s) 5, 270, 425, 573, 602
GlaI GCGC 1 cut(s) 339
GluI GCNGC 4 cut(s) 330, 341, 357, 459
GsuI CTGGAG 2 cut(s) 639, 689
HaeIII GGCC 2 cut(s) 399, 628
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 340
Hin1I GRCGYC 2 cut(s) 297, 347
Hin1II CATG 8 cut(s) 14, 55, 233, 374, 434, 491, 582, 590
Hin6I GCGC 1 cut(s) 338
HinP1I GCGC 1 cut(s) 338
Hpy166II GTNNAC 1 cut(s) 536
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 3 cut(s) 305, 656, 668
Hpy8I GTNNAC 1 cut(s) 536
HpyAV CCTTC 5 cut(s) 145, 343, 389, 428, 497
HpyCH4III ACNGT 4 cut(s) 174, 280, 321, 553
HpyCH4IV ACGT 2 cut(s) 104, 347
HpyCH4V TGCA 5 cut(s) 116, 167, 343, 359, 680
HpyF10VI GCNNNNNNNGC 3 cut(s) 294, 335, 497
HpyF3I CTNAG 1 cut(s) 382
HpySE526I ACGT 2 cut(s) 104, 347
Hsp92I GRCGYC 2 cut(s) 297, 347
Hsp92II CATG 8 cut(s) 14, 55, 233, 374, 434, 491, 582, 590
HspAI GCGC 1 cut(s) 338
Kzo9I GATC 1 cut(s) 31
LmnI GCTCC 6 cut(s) 285, 376, 574, 658, 670, 678
Lsp1109I GCAGC 3 cut(s) 327, 341, 343
LweI GCATC 3 cut(s) 52, 125, 368
MaeI CTAG 5 cut(s) 5, 270, 425, 573, 602
MaeII ACGT 2 cut(s) 104, 347
MaeIII GTNAC 1 cut(s) 689
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MboII GAAGA 2 cut(s) 38, 632
MhlI GDGCHC 3 cut(s) 381, 655, 675
MluCI AATT 2 cut(s) 478, 513
MnlI CCTC 2 cut(s) 287, 500
MseI TTAA 4 cut(s) 390, 477, 512, 703
MspCI CTTAAG 1 cut(s) 389
MspR9I CCNGG 2 cut(s) 214, 290
Mva1269I GAATGC 1 cut(s) 663
MvaI CCWGG 2 cut(s) 214, 290
MvnI CGCG 1 cut(s) 338
MwoI GCNNNNNNNGC 3 cut(s) 294, 335, 497
NdeII GATC 1 cut(s) 31
NlaIII CATG 8 cut(s) 14, 55, 233, 374, 434, 491, 582, 590
NlaIV GGNNCC 2 cut(s) 287, 654
NspI RCATGY 3 cut(s) 374, 434, 582
PceI AGGCCT 1 cut(s) 399
PciI ACATGT 3 cut(s) 370, 430, 578
PctI GAATGC 1 cut(s) 663
PkrI GCNGC 4 cut(s) 331, 342, 358, 460
Ppu21I YACGTR 1 cut(s) 105
PscI ACATGT 3 cut(s) 370, 430, 578
Psp124BI GAGCTC 2 cut(s) 381, 675
Psp6I CCWGG 2 cut(s) 212, 288
PspGI CCWGG 2 cut(s) 212, 288
PspN4I GGNNCC 2 cut(s) 287, 654
PstI CTGCAG 1 cut(s) 345
RsaI GTAC 2 cut(s) 277, 411
RsaNI GTAC 2 cut(s) 276, 410
SacI GAGCTC 2 cut(s) 381, 675
SaqAI TTAA 4 cut(s) 390, 477, 512, 703
SatI GCNGC 4 cut(s) 330, 341, 357, 459
Sau3AI GATC 1 cut(s) 31
ScrFI CCNGG 2 cut(s) 214, 290
SduI GDGCHC 3 cut(s) 381, 655, 675
SfaNI GCATC 3 cut(s) 52, 125, 368
SfcI CTRYAG 1 cut(s) 341
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 478, 513
SseBI AGGCCT 1 cut(s) 399
SsiI CCGC 1 cut(s) 458
SspMI CTAG 5 cut(s) 5, 270, 425, 573, 602
SstI GAGCTC 2 cut(s) 381, 675
StuI AGGCCT 1 cut(s) 399
StyD4I CCNGG 2 cut(s) 212, 288
TaaI ACNGT 4 cut(s) 174, 280, 321, 553
TaiI ACGT 2 cut(s) 107, 350
TaqI TCGA 1 cut(s) 441
TasI AATT 2 cut(s) 478, 513
TauI GCSGC 1 cut(s) 461
Tru1I TTAA 4 cut(s) 390, 477, 512, 703
Tru9I TTAA 4 cut(s) 390, 477, 512, 703
TseI GCWGC 3 cut(s) 329, 340, 356
TspDTI ATGAA 2 cut(s) 484, 633
TspGWI ACGGA 1 cut(s) 553
Vha464I CTTAAG 1 cut(s) 389
XceI RCATGY 3 cut(s) 374, 434, 582
XcmI CCANNNNNNNNNTGG 1 cut(s) 636
XmiI GTMKAC 1 cut(s) 535
XspI CTAG 5 cut(s) 5, 270, 425, 573, 602
ZraI GACGTC 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.