Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

6593284 .. 6595366

Gene Structure 2083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g08170.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGAATAATTTCATGGGGGGAGAGTTGAAGGCTTCTATGCAGAACGGTGAGCGGCGGGGCGGGGTTGCTGCGGCGGCGGAGGACCCTCCTTCCGACGACTTGGGTACTCCGGCTCTGACGGAAACCATGTCTACAGAATGGACGGATGAGAAGCACAGCATGTACCTCAAATCCATGGAAGCATCATTTGTCAACCAGTTGTATAATTCCATGGATTCGCGTGGTCGGAGCTTGCAAAAGGGGAATTCATTGCACCATAAATTGTCAAAGCAACCGCAGTTTAACTCTCGTGCCTCTTCCGGCCAGTTTAAGGTACTTCGAGGTGGCTGTTGGCAGAAGATCAATTTTGTAAGAGCTGAAGCTGAAGCAAATAAGGCAGATGAAGATCTTCTGACAAATCCGTGGGTCGTGCACTTTAGATCTGCCGGCAAGCCCAAAGAGTTTGAATATCCCGATGTTCAAGAACTGGCTGCATCACAATGTGAAGAAGTCGATTCAAGTAGGAAGAAGGAAATGACGGGTGCACCAGCGACATGCTCAAAGCAGTTTCATGCATCTCACTCTCAGTTGCGCCATCAGGAATTGGTCGGAGGGAATACAGAGGTCACAGATCAGAACTTTGTCGATGAAGATATTAAAGAAGAAAAGGAAGTCGGTTCATGTGACGGTAAGAGTATAAAAATGCTTATACTTAATGCCTCAAGTAACGATCAGGTTGTTCCACTCCGCAAGCCTGCCGATTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.46

Weight (kDa)

5.57

Isoelectric Point (pI)

39.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	52
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	1 cut(s)	220
AciI	CCGC	8 cut(s)	52, 55, 60, 71, 74, 77, 275, 727
AcoI	YGGCCR	1 cut(s)	301
AcsI	RAATTY	1 cut(s)	244
AcuI	CTGAAG	2 cut(s)	378, 384
AdeI	CACNNNGTG	1 cut(s)	482
AfaI	GTAC	3 cut(s)	106, 164, 315
AfiI	CCNNNNNNNGG	1 cut(s)	310
AgsI	TTSAA	4 cut(s)	28, 446, 461, 498
AluBI	AGCT	3 cut(s)	231, 356, 362
AluI	AGCT	3 cut(s)	231, 356, 362
Alw21I	GWGCWC	2 cut(s)	414, 526
Alw44I	GTGCAC	2 cut(s)	410, 522
AoxI	GGCC	1 cut(s)	301
ApaLI	GTGCAC	2 cut(s)	410, 522
ApeKI	GCWGC	2 cut(s)	68, 470
ApoI	RAATTY	1 cut(s)	244
Asp700I	GAANNNNTTC	2 cut(s)	8, 387
AspLEI	GCGC	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	414, 526
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	2 cut(s)	414, 526
BbvI	GCAGC	2 cut(s)	55, 457
BccI	CCATC	1 cut(s)	582
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	2 cut(s)	385, 419
BisI	GCNGC	5 cut(s)	53, 69, 72, 75, 471
BlsI	GCNGC	5 cut(s)	54, 70, 73, 76, 472
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	1 cut(s)	84
BmsI	GCATC	3 cut(s)	191, 482, 563
BpuEI	CTTGAG	1 cut(s)	685
BsaBI	GATNNNNATC	1 cut(s)	384
BsaJI	CCNNGG	3 cut(s)	174, 210, 401
Bsc4I	CCNNNNNNNGG	1 cut(s)	310
Bse118I	RCCGGY	1 cut(s)	425
Bse1I	ACTGG	3 cut(s)	196, 304, 471
Bse3DI	GCAATG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	384
BseDI	CCNNGG	3 cut(s)	174, 210, 401
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	384
BseLI	CCNNNNNNNGG	1 cut(s)	310
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	578
BseNI	ACTGG	3 cut(s)	196, 304, 471
BseSI	GKGCMC	2 cut(s)	414, 526
BseXI	GCAGC	2 cut(s)	55, 457
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	2 cut(s)	414, 526
BsiSI	CCGG	3 cut(s)	110, 300, 426
BslI	CCNNNNNNNGG	1 cut(s)	310
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	414, 526
Bsp143I	GATC	5 cut(s)	339, 385, 419, 610, 709
Bsp19I	CCATGG	2 cut(s)	174, 210
BspACI	CCGC	8 cut(s)	52, 55, 60, 71, 74, 77, 275, 727
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	577
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	1 cut(s)	84
BsrBI	CCGCTC	1 cut(s)	52
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	425
BsrI	ACTGG	3 cut(s)	196, 304, 471
BssAI	RCCGGY	1 cut(s)	425
BssECI	CCNNGG	3 cut(s)	174, 210, 401
BssMI	GATC	5 cut(s)	339, 385, 419, 610, 709
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	2 cut(s)	174, 210
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	2 cut(s)	47, 668
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	5 cut(s)	233, 427, 431, 731, 735
BstDEI	CTNAG	1 cut(s)	564
BstDSI	CCRYGG	3 cut(s)	174, 210, 401
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	5 cut(s)	342, 388, 422, 613, 712
BstMBI	GATC	5 cut(s)	339, 385, 419, 610, 709
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 374
BstNSI	RCATGY	2 cut(s)	163, 537
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	414, 526
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	55, 457
BstX2I	RGATCY	2 cut(s)	385, 419
BstYI	RGATCY	2 cut(s)	385, 419
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	3 cut(s)	174, 210, 401
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	5 cut(s)	233, 427, 431, 731, 735
CfoI	GCGC	1 cut(s)	573
Cfr10I	RCCGGY	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	3 cut(s)	105, 163, 314
CviAII	CATG	8 cut(s)	13, 127, 160, 175, 211, 534, 551, 660
CviQI	GTAC	3 cut(s)	105, 163, 314
DdeI	CTNAG	1 cut(s)	564
DpnI	GATC	5 cut(s)	341, 387, 421, 612, 711
DpnII	GATC	5 cut(s)	339, 385, 419, 610, 709
DraIII	CACNNNGTG	1 cut(s)	482
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	92
Eco130I	CCWWGG	2 cut(s)	174, 210
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	378, 384
EcoO109I	RGGNCCY	1 cut(s)	82
EcoRI	GAATTC	1 cut(s)	244
EcoT14I	CCWWGG	2 cut(s)	174, 210
EcoT22I	ATGCAT	1 cut(s)	556
ErhI	CCWWGG	2 cut(s)	174, 210
FaeI	CATG	8 cut(s)	16, 130, 163, 178, 214, 537, 554, 663
FatI	CATG	8 cut(s)	12, 126, 159, 174, 210, 533, 550, 659
FauI	CCCGC	2 cut(s)	48, 53
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	5 cut(s)	53, 69, 72, 75, 471
FokI	GGATG	1 cut(s)	158
Fsp4HI	GCNGC	5 cut(s)	53, 69, 72, 75, 471
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	5 cut(s)	53, 69, 72, 75, 471
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	3 cut(s)	110, 300, 426
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	8 cut(s)	16, 130, 163, 178, 214, 537, 554, 663
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	215, 494, 740
HpaII	CCGG	3 cut(s)	110, 300, 426
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	132, 193, 412, 524
Hpy188I	TCNGA	6 cut(s)	94, 117, 228, 393, 590, 615
Hpy188III	TCNNGA	4 cut(s)	452, 461, 578, 744
Hpy8I	GTNNAC	4 cut(s)	132, 193, 412, 524
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	22, 99, 502
HpyCH4III	ACNGT	2 cut(s)	47, 668
HpyCH4V	TGCA	7 cut(s)	40, 235, 253, 412, 473, 524, 554
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 374
HpyF3I	CTNAG	1 cut(s)	564
Hsp92II	CATG	8 cut(s)	16, 130, 163, 178, 214, 537, 554, 663
HspAI	GCGC	1 cut(s)	571
KroI	GCCGGC	1 cut(s)	425
KroNI	GCCGGC	1 cut(s)	427
Kzo9I	GATC	5 cut(s)	339, 385, 419, 610, 709
LmnI	GCTCC	1 cut(s)	228
LpnPI	CCDG	9 cut(s)	123, 209, 313, 317, 439, 452, 540, 563, 698
Lsp1109I	GCAGC	2 cut(s)	55, 457
LweI	GCATC	3 cut(s)	191, 482, 563
MaeIII	GTNAC	3 cut(s)	604, 662, 704
MalI	GATC	5 cut(s)	341, 387, 421, 612, 711
MbiI	CCGCTC	1 cut(s)	52
MboI	GATC	5 cut(s)	339, 385, 419, 610, 709
MboII	GAAGA	8 cut(s)	288, 349, 380, 395, 497, 517, 641, 653
MflI	RGATCY	2 cut(s)	385, 419
MhlI	GDGCHC	2 cut(s)	414, 526
MluCI	AATT	6 cut(s)	7, 205, 244, 260, 343, 581
MmeI	TCCRAC	3 cut(s)	117, 206, 568
MnlI	CCTC	8 cut(s)	73, 96, 176, 304, 314, 584, 595, 709
Mph1103I	ATGCAT	1 cut(s)	556
MroNI	GCCGGC	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	8, 387
MseI	TTAA	4 cut(s)	282, 309, 636, 693
MslI	CAYNNNNRTG	1 cut(s)	478
MspI	CCGG	3 cut(s)	110, 300, 426
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	74, 374
NaeI	GCCGGC	1 cut(s)	427
NcoI	CCATGG	2 cut(s)	174, 210
NdeII	GATC	5 cut(s)	339, 385, 419, 610, 709
NgoMIV	GCCGGC	1 cut(s)	425
NlaIII	CATG	8 cut(s)	16, 130, 163, 178, 214, 537, 554, 663
NlaIV	GGNNCC	1 cut(s)	84
NmuCI	GTSAC	2 cut(s)	604, 662
NsiI	ATGCAT	1 cut(s)	556
NspI	RCATGY	2 cut(s)	163, 537
PdiI	GCCGGC	1 cut(s)	427
PdmI	GAANNNNTTC	2 cut(s)	8, 387
PfeI	GAWTC	3 cut(s)	215, 494, 740
PkrI	GCNGC	5 cut(s)	54, 70, 73, 76, 472
PpuMI	RGGWCCY	1 cut(s)	82
Psp5II	RGGWCCY	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	385, 419
RsaI	GTAC	3 cut(s)	106, 164, 315
RsaNI	GTAC	3 cut(s)	105, 163, 314
RseI	CAYNNNNRTG	1 cut(s)	478
SaqAI	TTAA	4 cut(s)	282, 309, 636, 693
SatI	GCNGC	5 cut(s)	53, 69, 72, 75, 471
Sau3AI	GATC	5 cut(s)	339, 385, 419, 610, 709
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	2 cut(s)	414, 526
SetI	ASST	8 cut(s)	168, 233, 315, 325, 358, 364, 606, 717
SfaNI	GCATC	3 cut(s)	191, 482, 563
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	478
SmlI	CTYRAG	1 cut(s)	700
SmoI	CTYRAG	1 cut(s)	700
Sse9I	AATT	6 cut(s)	7, 205, 244, 260, 343, 581
SsiI	CCGC	8 cut(s)	52, 55, 60, 71, 74, 77, 275, 727
StyI	CCWWGG	2 cut(s)	174, 210
TaaI	ACNGT	2 cut(s)	47, 668
TaqI	TCGA	3 cut(s)	319, 492, 624
TasI	AATT	6 cut(s)	7, 205, 244, 260, 343, 581
TauI	GCSGC	3 cut(s)	55, 74, 77
TfiI	GAWTC	3 cut(s)	215, 494, 740
Tru1I	TTAA	4 cut(s)	282, 309, 636, 693
Tru9I	TTAA	4 cut(s)	282, 309, 636, 693
TseFI	GTSAC	2 cut(s)	604, 662
TseI	GCWGC	2 cut(s)	68, 470
Tsp45I	GTSAC	2 cut(s)	604, 662
TspDTI	ATGAA	6 cut(s)	17, 237, 396, 539, 642, 648
TspGWI	ACGGA	3 cut(s)	134, 158, 390
VneI	GTGCAC	2 cut(s)	410, 522
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	244
XceI	RCATGY	2 cut(s)	163, 537
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	2 cut(s)	8, 387
Zsp2I	ATGCAT	1 cut(s)	556

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.