Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

51092720 .. 51093958

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0362700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGGCTGCCGAGACCGCCAGATCCACCGGCACGGTCAAGTGGTTCAGCGCGCAGAAAGGGTTCGGCTTCATATCCCCGGAGGACGGCGGCGAGGACCTCTTCGTCCACCAGACTTCGATCCAGTCCGACGGCTTCCGCACCCTCTCCGAGGGCCAGGCCGTCGAGTTCCTCGTCGAAGTCAGCGAAGACGGCCGCACCAAAGCCGTCGACGTCGTCAACCTCACCCGATCCCGCCGTCCTGGCTTCGACCGCGGAGGACGCGGCCGTGGCGGCCGGAGGGGCAGAGGCCGCGGTGGTTATGGGAGGTCTGGCGGAGGCCCGGAGGAATATAGTGTCGCCAGAGGCGGAGGGAGGGGTGACGGTTATGGCGGTCGTGAGTGCTACAGTTGCGGTGAAATTGGGCATTTGGCGAGGGACTGTTACGAGGGCGGTGGCGGGGGTGGGAGATTTGGCGGCCGTGGGAGAGGTGGAGGTAGAGGCTACGGTGGCCGTGGTGGCGGCCGGGGGCGTCGTGGCGGTGGTTGTTATAATTGTGGAGAGGAAGGGCATTTGGCAAGGGAATGCGCGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

19.7

Weight (kDa)

9.35

Isoelectric Point (pI)

53.51

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CSD	PF00313	9 - 72	1.2e-25	'Cold-shock' DNA-binding domain
zf-CCHC	PF00098	126 - 140	2.2e-06	Zinc knuckle
zf-CCHC	PF00098	174 - 188	2.7e-07	Zinc knuckle

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	528
AasI	GACNNNNNNGTC	1 cut(s)	101
AatII	GACGTC	1 cut(s)	213
AccI	GTMKAC	1 cut(s)	207
AccII	CGCG	5 cut(s)	50, 252, 261, 291, 566
AclWI	GGATC	3 cut(s)	15, 112, 222
AcoI	YGGCCR	6 cut(s)	190, 262, 271, 454, 487, 499
AcyI	GRCGYC	2 cut(s)	210, 508
AfiI	CCNNNNNNNGG	2 cut(s)	83, 148
AjnI	CCWGG	2 cut(s)	153, 238
Alw26I	GTCTC	1 cut(s)	5
AlwI	GGATC	3 cut(s)	15, 112, 222
ApeKI	GCWGC	1 cut(s)	5
Asp700I	GAANNNNTTC	1 cut(s)	59
AspLEI	GCGC	4 cut(s)	50, 52, 566, 568
AspS9I	GGNCC	3 cut(s)	94, 151, 317
AsuC2I	CCSGG	3 cut(s)	77, 320, 503
AsuHPI	GGTGA	3 cut(s)	214, 368, 404
AvaII	GGWCC	1 cut(s)	94
BbsI	GAAGAC	1 cut(s)	192
BceAI	ACGGC	9 cut(s)	100, 143, 145, 188, 205, 219, 249, 441, 474
BciT130I	CCWGG	2 cut(s)	155, 240
BcnI	CCSGG	3 cut(s)	77, 320, 503
BcoDI	GTCTC	1 cut(s)	5
BfmI	CTRYAG	1 cut(s)	382
BglI	GCCNNNNNGGC	4 cut(s)	240, 270, 279, 495
BisI	GCNGC	8 cut(s)	6, 88, 193, 262, 271, 289, 454, 499
BlsI	GCNGC	8 cut(s)	7, 89, 194, 263, 272, 290, 455, 500
Bme1390I	CCNGG	5 cut(s)	77, 155, 240, 320, 503
Bme18I	GGWCC	1 cut(s)	94
BmgT120I	GGNCC	3 cut(s)	94, 151, 317
BmrFI	CCNGG	5 cut(s)	77, 155, 240, 320, 503
BpiI	GAAGAC	1 cut(s)	192
BpuMI	CCSGG	3 cut(s)	77, 320, 503
BsaHI	GRCGYC	2 cut(s)	210, 508
BsaI	GGTCTC	1 cut(s)	5
BsaJI	CCNNGG	8 cut(s)	75, 147, 250, 265, 289, 457, 490, 502
Bsc4I	CCNNNNNNNGG	2 cut(s)	83, 148
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	121
BseBI	CCWGG	2 cut(s)	155, 240
BseDI	CCNNGG	8 cut(s)	75, 147, 250, 265, 289, 457, 490, 502
BseLI	CCNNNNNNNGG	2 cut(s)	83, 148
BseNI	ACTGG	1 cut(s)	121
BsePI	GCGCGC	2 cut(s)	48, 564
BseX3I	CGGCCG	5 cut(s)	190, 262, 271, 454, 499
Bsh1236I	CGCG	5 cut(s)	50, 252, 261, 291, 566
Bsh1285I	CGRYCG	7 cut(s)	193, 250, 265, 274, 373, 457, 502
BsiEI	CGRYCG	7 cut(s)	193, 250, 265, 274, 373, 457, 502
BsiSI	CCGG	5 cut(s)	27, 77, 274, 320, 502
BslFI	GGGAC	1 cut(s)	428
BslI	CCNNNNNNNGG	2 cut(s)	83, 148
BsmAI	GTCTC	1 cut(s)	5
BsmFI	GGGAC	1 cut(s)	428
BsmI	GAATGC	1 cut(s)	566
Bso31I	GGTCTC	1 cut(s)	5
Bsp143I	GATC	3 cut(s)	20, 117, 227
BspFNI	CGCG	5 cut(s)	50, 252, 261, 291, 566
BspPI	GGATC	3 cut(s)	15, 112, 222
BspTNI	GGTCTC	1 cut(s)	5
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	121
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	8 cut(s)	75, 147, 250, 265, 289, 457, 490, 502
BssHII	GCGCGC	2 cut(s)	48, 564
BssMI	GATC	3 cut(s)	20, 117, 227
BssNI	GRCGYC	2 cut(s)	210, 508
Bst2UI	CCWGG	2 cut(s)	155, 240
Bst4CI	ACNGT	5 cut(s)	34, 362, 386, 419, 485
Bst6I	CTCTTC	1 cut(s)	104
BstACI	GRCGYC	2 cut(s)	210, 508
BstC8I	GCNNGC	2 cut(s)	50, 566
BstDSI	CCRYGG	5 cut(s)	250, 265, 289, 457, 490
BstENI	CCTNNNNNAGG	1 cut(s)	146
BstFNI	CGCG	5 cut(s)	50, 252, 261, 291, 566
BstHHI	GCGC	4 cut(s)	50, 52, 566, 568
BstKTI	GATC	3 cut(s)	23, 120, 230
BstMAI	GTCTC	1 cut(s)	5
BstMBI	GATC	3 cut(s)	20, 117, 227
BstMCI	CGRYCG	7 cut(s)	193, 250, 265, 274, 373, 457, 502
BstNI	CCWGG	2 cut(s)	155, 240
BstSCI	CCNGG	5 cut(s)	75, 153, 238, 318, 501
BstSFI	CTRYAG	1 cut(s)	382
BstUI	CGCG	5 cut(s)	50, 252, 261, 291, 566
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	1 cut(s)	20
BstYI	RGATCY	1 cut(s)	20
BstZI	CGGCCG	5 cut(s)	190, 262, 271, 454, 499
BtgI	CCRYGG	5 cut(s)	250, 265, 289, 457, 490
Cac8I	GCNNGC	2 cut(s)	50, 566
CfoI	GCGC	4 cut(s)	50, 52, 566, 568
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	3 cut(s)	94, 151, 317
Cfr42I	CCGCGG	2 cut(s)	253, 292
CseI	GACGC	2 cut(s)	267, 497
DpnI	GATC	3 cut(s)	22, 119, 229
DpnII	GATC	3 cut(s)	20, 117, 227
DrdI	GACNNNNNNGTC	1 cut(s)	101
DseDI	GACNNNNNNGTC	1 cut(s)	101
EaeI	YGGCCR	6 cut(s)	190, 262, 271, 454, 487, 499
EagI	CGGCCG	5 cut(s)	190, 262, 271, 454, 499
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
EciI	GGCGGA	2 cut(s)	327, 360
EclXI	CGGCCG	5 cut(s)	190, 262, 271, 454, 499
Eco31I	GGTCTC	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	94
Eco52I	CGGCCG	5 cut(s)	190, 262, 271, 454, 499
EcoNI	CCTNNNNNAGG	1 cut(s)	146
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	2 cut(s)	153, 238
FaiI	YATR	5 cut(s)	71, 300, 330, 366, 528
FaqI	GGGAC	1 cut(s)	428
FauI	CCCGC	2 cut(s)	239, 428
FblI	GTMKAC	1 cut(s)	207
Fnu4HI	GCNGC	8 cut(s)	6, 88, 193, 262, 271, 289, 454, 499
Fsp4HI	GCNGC	8 cut(s)	6, 88, 193, 262, 271, 289, 454, 499
GlaI	GCGC	4 cut(s)	49, 51, 565, 567
GluI	GCNGC	8 cut(s)	6, 88, 193, 262, 271, 289, 454, 499
HapII	CCGG	5 cut(s)	27, 77, 274, 320, 502
HgaI	GACGC	2 cut(s)	267, 497
HhaI	GCGC	4 cut(s)	50, 52, 566, 568
Hin1I	GRCGYC	2 cut(s)	210, 508
Hin6I	GCGC	4 cut(s)	48, 50, 564, 566
HinP1I	GCGC	4 cut(s)	48, 50, 564, 566
HincII	GTYRAC	2 cut(s)	208, 217
HindII	GTYRAC	2 cut(s)	208, 217
HpaII	CCGG	5 cut(s)	27, 77, 274, 320, 502
HphI	GGTGA	3 cut(s)	214, 368, 404
Hpy166II	GTNNAC	3 cut(s)	106, 208, 217
Hpy188I	TCNGA	2 cut(s)	127, 148
Hpy188III	TCNNGA	1 cut(s)	374
Hpy8I	GTNNAC	3 cut(s)	106, 208, 217
Hpy99I	CGWCG	7 cut(s)	131, 164, 176, 209, 212, 215, 513
HpyAV	CCTTC	1 cut(s)	536
HpyCH4III	ACNGT	5 cut(s)	34, 362, 386, 419, 485
HpyCH4IV	ACGT	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	2 cut(s)	210, 508
HspAI	GCGC	4 cut(s)	48, 50, 564, 566
KspI	CCGCGG	2 cut(s)	253, 292
Kzo9I	GATC	3 cut(s)	20, 117, 227
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	2 cut(s)	356, 419
MalI	GATC	3 cut(s)	22, 119, 229
MboI	GATC	3 cut(s)	20, 117, 227
MboII	GAAGA	2 cut(s)	91, 197
MflI	RGATCY	1 cut(s)	20
MluCI	AATT	2 cut(s)	396, 529
MmeI	TCCRAC	1 cut(s)	150
MroXI	GAANNNNTTC	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	252, 291
MspI	CCGG	5 cut(s)	27, 77, 274, 320, 502
MspR9I	CCNGG	5 cut(s)	77, 155, 240, 320, 503
Mva1269I	GAATGC	1 cut(s)	566
MvaI	CCWGG	2 cut(s)	155, 240
MvnI	CGCG	5 cut(s)	50, 252, 261, 291, 566
NciI	CCSGG	3 cut(s)	77, 320, 503
NdeII	GATC	3 cut(s)	20, 117, 227
NmeAIII	GCCGAG	1 cut(s)	34
NmuCI	GTSAC	1 cut(s)	356
PauI	GCGCGC	2 cut(s)	48, 564
PcsI	WCGNNNNNNNCGW	2 cut(s)	168, 180
PctI	GAATGC	1 cut(s)	566
PdmI	GAANNNNTTC	1 cut(s)	59
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	8 cut(s)	7, 89, 194, 263, 272, 290, 455, 500
PpuMI	RGGWCCY	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	528
Psp5II	RGGWCCY	1 cut(s)	94
Psp6I	CCWGG	2 cut(s)	153, 238
PspGI	CCWGG	2 cut(s)	153, 238
PspPI	GGNCC	3 cut(s)	94, 151, 317
PspPPI	RGGWCCY	1 cut(s)	94
PsuI	RGATCY	1 cut(s)	20
PsyI	GACNNNGTC	1 cut(s)	212
PteI	GCGCGC	2 cut(s)	48, 564
SacII	CCGCGG	2 cut(s)	253, 292
SalI	GTCGAC	1 cut(s)	206
SatI	GCNGC	8 cut(s)	6, 88, 193, 262, 271, 289, 454, 499
Sau3AI	GATC	3 cut(s)	20, 117, 227
Sau96I	GGNCC	3 cut(s)	94, 151, 317
ScrFI	CCNGG	5 cut(s)	77, 155, 240, 320, 503
SetI	ASST	6 cut(s)	99, 213, 222, 308, 469, 475
SfcI	CTRYAG	1 cut(s)	382
SfiI	GGCCNNNNNGGCC	1 cut(s)	270
Sfr303I	CCGCGG	2 cut(s)	253, 292
SgrBI	CCGCGG	2 cut(s)	253, 292
SgrDI	CGTCGACG	1 cut(s)	206
SinI	GGWCC	1 cut(s)	94
Sse9I	AATT	2 cut(s)	396, 529
StyD4I	CCNGG	5 cut(s)	75, 153, 238, 318, 501
TaaI	ACNGT	5 cut(s)	34, 362, 386, 419, 485
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	5 cut(s)	116, 162, 174, 207, 246
TasI	AATT	2 cut(s)	396, 529
TauI	GCSGC	7 cut(s)	90, 195, 264, 273, 291, 456, 501
TseFI	GTSAC	1 cut(s)	356
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	356
TspDTI	ATGAA	1 cut(s)	58
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	94
XagI	CCTNNNNNAGG	1 cut(s)	146
XmiI	GTMKAC	1 cut(s)	207
XmnI	GAANNNNTTC	1 cut(s)	59
ZraI	GACGTC	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.