Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

8507688 .. 8510320

Gene Structure 2633 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1101100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGATAATTTCATGGGGGGAGAGTTGAAGGATTCTATGCAGAACGGTGAGAGGCGGGGCGGGGTTGCTGCGGCGGCGGAGGACCCTTCCTCCGACGACTTGGGTACTCCGGCTCTGACGGAAACCCTGTCTACAGAATGGACGGATGAGAAGCACAGCATGTACCTCAAATCCATGGAAGCATCATTTGTCAACCAGTTGTATAATTCCATGGATTCGCGTGGTCGGAGCTCGCAAAAGAGGAGTTCATTGCACCCGAAATTGTCAAAGCAACCGCAGTTTAACTCTCGTGCCTCTTCCGGCCAGTTTAAGATACTTCGAGGTGGCTGTTGGCAGAAGATCAATTTTGTAAGAGCTGAAGCAAATAAGGCAGATGAAGATCTTCTGGCAAATCCATGGGTCGTGCACTTTAGATCTGCCGGCAAGCCCAAAGAGTTTGAATATCCCAATGTTCAAGAACTGGCTGCATCACAATGTGAAGAAGTCGATTCAAGTAGGAAGAAGGAAATGACGGGTGCACCAGCGACATGCTCAAAGCAGTTTCGTGCATCTCACTCTCAGTTGCGCCATCAGGAATTGGTTGGAGGGAATACAGAGGTCACAGATCAGAACTTTGTCGATGAAGATATTAAAGAAGAAAAGGAAGTCGGTTCATGTGATCGTAAGAGTATAAAAAGGCTTATACTTAATGCCTCAAGTAACGATCAGGTTGTTCCACTCCGCAAGCCTACTGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

247

Amino Acids

27.38

Weight (kDa)

6.25

Isoelectric Point (pI)

42.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	131
AccII	CGCG	1 cut(s)	220
AciI	CCGC	7 cut(s)	55, 60, 71, 74, 77, 275, 721
AcoI	YGGCCR	1 cut(s)	301
AcuI	CTGAAG	1 cut(s)	378
AdeI	CACNNNGTG	1 cut(s)	476
AfaI	GTAC	2 cut(s)	106, 164
AgsI	TTSAA	4 cut(s)	28, 440, 455, 492
AluBI	AGCT	2 cut(s)	231, 356
AluI	AGCT	2 cut(s)	231, 356
Alw21I	GWGCWC	3 cut(s)	233, 408, 520
Alw44I	GTGCAC	2 cut(s)	404, 516
AoxI	GGCC	1 cut(s)	301
ApaLI	GTGCAC	2 cut(s)	404, 516
ApeKI	GCWGC	2 cut(s)	68, 464
Asp700I	GAANNNNTTC	1 cut(s)	381
AspLEI	GCGC	1 cut(s)	567
AspS9I	GGNCC	1 cut(s)	82
AsuHPI	GGTGA	1 cut(s)	59
AvaII	GGWCC	1 cut(s)	82
BaeGI	GKGCMC	2 cut(s)	408, 520
BanII	GRGCYC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	288
Bbv12I	GWGCWC	3 cut(s)	233, 408, 520
BbvI	GCAGC	2 cut(s)	55, 451
BccI	CCATC	1 cut(s)	576
BfmI	CTRYAG	1 cut(s)	132
BglII	AGATCT	2 cut(s)	379, 413
BisI	GCNGC	4 cut(s)	69, 72, 75, 465
BlsI	GCNGC	4 cut(s)	70, 73, 76, 466
Bme18I	GGWCC	1 cut(s)	82
BmgT120I	GGNCC	1 cut(s)	82
BmiI	GGNNCC	2 cut(s)	84, 736
BmsI	GCATC	3 cut(s)	191, 476, 557
BpuEI	CTTGAG	1 cut(s)	679
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	3 cut(s)	174, 210, 395
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bse118I	RCCGGY	1 cut(s)	419
Bse1I	ACTGG	4 cut(s)	196, 304, 465, 736
Bse3DI	GCAATG	1 cut(s)	248
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	3 cut(s)	174, 210, 395
BseGI	GGATG	1 cut(s)	151
BseJI	GATNNNNATC	1 cut(s)	378
BseMI	GCAATG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	572
BseNI	ACTGG	4 cut(s)	196, 304, 465, 736
BseRI	GAGGAG	1 cut(s)	256
BseSI	GKGCMC	2 cut(s)	408, 520
BseXI	GCAGC	2 cut(s)	55, 451
Bsh1236I	CGCG	1 cut(s)	220
BshFI	GGCC	1 cut(s)	303
BsiHKAI	GWGCWC	3 cut(s)	233, 408, 520
BsiSI	CCGG	3 cut(s)	110, 300, 420
BsnI	GGCC	1 cut(s)	303
Bsp1286I	GDGCHC	3 cut(s)	233, 408, 520
Bsp143I	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
Bsp19I	CCATGG	3 cut(s)	174, 210, 395
BspACI	CCGC	7 cut(s)	55, 60, 71, 74, 77, 275, 721
BspANI	GGCC	1 cut(s)	303
BspCNI	CTCAG	1 cut(s)	571
BspFNI	CGCG	1 cut(s)	220
BspLI	GGNNCC	2 cut(s)	84, 736
BsrDI	GCAATG	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	419
BsrI	ACTGG	4 cut(s)	196, 304, 465, 736
BssAI	RCCGGY	1 cut(s)	419
BssECI	CCNNGG	3 cut(s)	174, 210, 395
BssMI	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
BssSI	CACGAG	1 cut(s)	288
BssT1I	CCWWGG	3 cut(s)	174, 210, 395
Bst2BI	CACGAG	1 cut(s)	288
Bst4CI	ACNGT	1 cut(s)	47
Bst6I	CTCTTC	1 cut(s)	301
BstC8I	GCNNGC	4 cut(s)	233, 421, 425, 725
BstDEI	CTNAG	1 cut(s)	558
BstDSI	CCRYGG	3 cut(s)	174, 210, 395
BstF5I	GGATG	1 cut(s)	151
BstFNI	CGCG	1 cut(s)	220
BstHHI	GCGC	1 cut(s)	567
BstKTI	GATC	6 cut(s)	342, 382, 416, 607, 661, 706
BstMBI	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 368
BstNSI	RCATGY	2 cut(s)	163, 531
BstSFI	CTRYAG	1 cut(s)	132
BstSLI	GKGCMC	2 cut(s)	408, 520
BstUI	CGCG	1 cut(s)	220
BstV1I	GCAGC	2 cut(s)	55, 451
BstX2I	RGATCY	2 cut(s)	379, 413
BstYI	RGATCY	2 cut(s)	379, 413
BsuRI	GGCC	1 cut(s)	303
BtgI	CCRYGG	3 cut(s)	174, 210, 395
BtsCI	GGATG	1 cut(s)	151
Cac8I	GCNNGC	4 cut(s)	233, 421, 425, 725
CfoI	GCGC	1 cut(s)	567
Cfr10I	RCCGGY	1 cut(s)	419
Cfr13I	GGNCC	1 cut(s)	82
Csp6I	GTAC	2 cut(s)	105, 163
CviAII	CATG	7 cut(s)	13, 160, 175, 211, 396, 528, 654
CviJI	RGCY	9 cut(s)	113, 231, 303, 327, 356, 427, 464, 679, 727
CviKI_1	RGCY	9 cut(s)	113, 231, 303, 327, 356, 427, 464, 679, 727
CviQI	GTAC	2 cut(s)	105, 163
DdeI	CTNAG	1 cut(s)	558
DpnI	GATC	6 cut(s)	341, 381, 415, 606, 660, 705
DpnII	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
DraIII	CACNNNGTG	1 cut(s)	476
EaeI	YGGCCR	1 cut(s)	301
Eam1104I	CTCTTC	1 cut(s)	301
EarI	CTCTTC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	92
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	3 cut(s)	174, 210, 395
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	82
Eco53kI	GAGCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	378
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	82
EcoT14I	CCWWGG	3 cut(s)	174, 210, 395
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	3 cut(s)	174, 210, 395
FaeI	CATG	7 cut(s)	16, 163, 178, 214, 399, 531, 657
FatI	CATG	7 cut(s)	12, 159, 174, 210, 395, 527, 653
FauI	CCCGC	2 cut(s)	48, 53
FblI	GTMKAC	1 cut(s)	131
Fnu4HI	GCNGC	4 cut(s)	69, 72, 75, 465
FokI	GGATG	1 cut(s)	158
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	4 cut(s)	69, 72, 75, 465
GlaI	GCGC	1 cut(s)	566
GluI	GCNGC	4 cut(s)	69, 72, 75, 465
HaeIII	GGCC	1 cut(s)	303
HapII	CCGG	3 cut(s)	110, 300, 420
HhaI	GCGC	1 cut(s)	567
Hin1II	CATG	7 cut(s)	16, 163, 178, 214, 399, 531, 657
Hin6I	GCGC	1 cut(s)	565
HinP1I	GCGC	1 cut(s)	565
HincII	GTYRAC	1 cut(s)	193
HindII	GTYRAC	1 cut(s)	193
HinfI	GANTC	3 cut(s)	32, 215, 488
HpaII	CCGG	3 cut(s)	110, 300, 420
HphI	GGTGA	1 cut(s)	59
Hpy166II	GTNNAC	4 cut(s)	132, 193, 406, 518
Hpy188I	TCNGA	4 cut(s)	94, 117, 228, 609
Hpy188III	TCNNGA	3 cut(s)	455, 572, 738
Hpy8I	GTNNAC	4 cut(s)	132, 193, 406, 518
Hpy99I	CGWCG	1 cut(s)	98
HpyAV	CCTTC	3 cut(s)	22, 96, 496
HpyCH4III	ACNGT	1 cut(s)	47
HpyCH4V	TGCA	6 cut(s)	40, 253, 406, 467, 518, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 368
HpyF3I	CTNAG	1 cut(s)	558
Hsp92II	CATG	7 cut(s)	16, 163, 178, 214, 399, 531, 657
HspAI	GCGC	1 cut(s)	565
KroI	GCCGGC	1 cut(s)	419
KroNI	GCCGGC	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
LmnI	GCTCC	1 cut(s)	228
Lsp1109I	GCAGC	2 cut(s)	55, 451
LweI	GCATC	3 cut(s)	191, 476, 557
MaeIII	GTNAC	2 cut(s)	598, 698
MalI	GATC	6 cut(s)	341, 381, 415, 606, 660, 705
MboI	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
MboII	GAAGA	8 cut(s)	288, 349, 374, 389, 491, 511, 635, 647
MflI	RGATCY	2 cut(s)	379, 413
MhlI	GDGCHC	3 cut(s)	233, 408, 520
MluCI	AATT	5 cut(s)	7, 205, 260, 343, 575
MmeI	TCCRAC	3 cut(s)	117, 206, 562
MroNI	GCCGGC	1 cut(s)	419
MroXI	GAANNNNTTC	1 cut(s)	381
MseI	TTAA	4 cut(s)	282, 309, 630, 687
MslI	CAYNNNNRTG	1 cut(s)	472
MspI	CCGG	3 cut(s)	110, 300, 420
MvnI	CGCG	1 cut(s)	220
MwoI	GCNNNNNNNGC	2 cut(s)	74, 368
NaeI	GCCGGC	1 cut(s)	421
NcoI	CCATGG	3 cut(s)	174, 210, 395
NdeII	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
NgoMIV	GCCGGC	1 cut(s)	419
NlaIII	CATG	7 cut(s)	16, 163, 178, 214, 399, 531, 657
NlaIV	GGNNCC	2 cut(s)	84, 736
NmuCI	GTSAC	1 cut(s)	598
NspI	RCATGY	2 cut(s)	163, 531
PdiI	GCCGGC	1 cut(s)	421
PdmI	GAANNNNTTC	1 cut(s)	381
PfeI	GAWTC	3 cut(s)	32, 215, 488
PkrI	GCNGC	4 cut(s)	70, 73, 76, 466
PpuMI	RGGWCCY	1 cut(s)	82
Psp124BI	GAGCTC	1 cut(s)	233
Psp5II	RGGWCCY	1 cut(s)	82
PspN4I	GGNNCC	2 cut(s)	84, 736
PspPI	GGNCC	1 cut(s)	82
PspPPI	RGGWCCY	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	379, 413
RsaI	GTAC	2 cut(s)	106, 164
RsaNI	GTAC	2 cut(s)	105, 163
RseI	CAYNNNNRTG	1 cut(s)	472
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	4 cut(s)	282, 309, 630, 687
SatI	GCNGC	4 cut(s)	69, 72, 75, 465
Sau3AI	GATC	6 cut(s)	339, 379, 413, 604, 658, 703
Sau96I	GGNCC	1 cut(s)	82
SduI	GDGCHC	3 cut(s)	233, 408, 520
SetI	ASST	6 cut(s)	168, 233, 325, 358, 600, 711
SfaNI	GCATC	3 cut(s)	191, 476, 557
SfcI	CTRYAG	1 cut(s)	132
SinI	GGWCC	1 cut(s)	82
SmiMI	CAYNNNNRTG	1 cut(s)	472
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	5 cut(s)	7, 205, 260, 343, 575
SsiI	CCGC	7 cut(s)	55, 60, 71, 74, 77, 275, 721
SstI	GAGCTC	1 cut(s)	233
StyI	CCWWGG	3 cut(s)	174, 210, 395
TaaI	ACNGT	1 cut(s)	47
TaqI	TCGA	3 cut(s)	319, 486, 618
TasI	AATT	5 cut(s)	7, 205, 260, 343, 575
TauI	GCSGC	2 cut(s)	74, 77
TfiI	GAWTC	3 cut(s)	32, 215, 488
Tru1I	TTAA	4 cut(s)	282, 309, 630, 687
Tru9I	TTAA	4 cut(s)	282, 309, 630, 687
TseFI	GTSAC	1 cut(s)	598
TseI	GCWGC	2 cut(s)	68, 464
Tsp45I	GTSAC	1 cut(s)	598
TspDTI	ATGAA	4 cut(s)	237, 390, 636, 642
TspGWI	ACGGA	2 cut(s)	134, 158
VneI	GTGCAC	2 cut(s)	404, 516
VpaK11BI	GGWCC	1 cut(s)	82
XceI	RCATGY	2 cut(s)	163, 531
XmiI	GTMKAC	1 cut(s)	131
XmnI	GAANNNNTTC	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.