Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

64866487 .. 64869813

Gene Structure 3327 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G041150.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGAAATTTGGAAGGAAAGAGGGTACTCCGGCCGCAACCGCAACAGAAACTATGTCTACTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCGATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGCAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGCGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATTCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGAGGTGTCAGACCAAAACTTCGCTGATGAAGATATCAAAGAGAAAAAGGCCATTACTTCATGCAATTCTAAGAGGATGAAAACTCTTATACTTCAAGCCTCAAGTAACGATCAGGTTGTTCCATTCAGAAAGCCTGCTGATACTGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

227

Amino Acids

25.35

Weight (kDa)

8.17

Isoelectric Point (pI)

44.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	362
Acc36I	ACCTGC	1 cut(s)	362
AccI	GTMKAC	1 cut(s)	56
AciI	CCGC	4 cut(s)	33, 39, 401, 519
AclWI	GGATC	3 cut(s)	328, 341, 342
AcoI	YGGCCR	2 cut(s)	30, 220
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	303, 328
AcvI	CACGTG	1 cut(s)	146
AfaI	GTAC	3 cut(s)	25, 89, 234
AfiI	CCNNNNNNNGG	2 cut(s)	229, 394
AflIII	ACRYGT	1 cut(s)	143
AgsI	TTSAA	5 cut(s)	202, 374, 426, 433, 623
AleI	CACNNNNGTG	1 cut(s)	530
AluBI	AGCT	2 cut(s)	281, 458
AluI	AGCT	2 cut(s)	281, 458
AlwI	GGATC	3 cut(s)	328, 341, 342
AoxI	GGCC	3 cut(s)	30, 220, 576
ApeKI	GCWGC	3 cut(s)	212, 246, 398
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AsuHPI	GGTGA	1 cut(s)	287
AsuII	TTCGAA	1 cut(s)	467
BalI	TGGCCA	1 cut(s)	222
BamHI	GGATCC	1 cut(s)	333
BauI	CACGAG	1 cut(s)	207
BbrPI	CACGTG	1 cut(s)	146
BbvI	GCAGC	3 cut(s)	199, 233, 385
BccI	CCATC	1 cut(s)	94
BcgI	CGANNNNNNTGC	2 cut(s)	228, 262
BciVI	GTATCC	1 cut(s)	133
BfuAI	ACCTGC	1 cut(s)	362
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	6 cut(s)	33, 213, 247, 399, 402, 520
BlsI	GCNGC	6 cut(s)	34, 214, 248, 400, 403, 521
BmiI	GGNNCC	1 cut(s)	335
BmsI	GCATC	3 cut(s)	116, 489, 511
Bpu14I	TTCGAA	1 cut(s)	467
BpuEI	CTTGAG	1 cut(s)	613
Bsa29I	ATCGAT	1 cut(s)	98
BsaAI	YACGTR	1 cut(s)	146
BsaJI	CCNNGG	2 cut(s)	135, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	229, 394
Bse1I	ACTGG	2 cut(s)	121, 223
BseCI	ATCGAT	1 cut(s)	98
BseDI	CCNNGG	2 cut(s)	135, 329
BseGI	GGATG	2 cut(s)	182, 609
BseLI	CCNNNNNNNGG	2 cut(s)	229, 394
BseNI	ACTGG	2 cut(s)	121, 223
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	199, 233, 385
BsgI	GTGCAG	2 cut(s)	323, 435
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	32, 222, 578
BshVI	ATCGAT	1 cut(s)	98
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	229, 394
BsnI	GGCC	3 cut(s)	32, 222, 578
Bsp119I	TTCGAA	1 cut(s)	467
Bsp143I	GATC	5 cut(s)	298, 313, 333, 347, 637
Bsp19I	CCATGG	1 cut(s)	135
BspACI	CCGC	4 cut(s)	33, 39, 401, 519
BspANI	GGCC	3 cut(s)	32, 222, 578
BspDI	ATCGAT	1 cut(s)	98
BspLI	GGNNCC	1 cut(s)	335
BspMI	ACCTGC	1 cut(s)	362
BspPI	GGATC	3 cut(s)	328, 341, 342
BspT104I	TTCGAA	1 cut(s)	467
BsrI	ACTGG	2 cut(s)	121, 223
BssECI	CCNNGG	2 cut(s)	135, 329
BssMI	GATC	5 cut(s)	298, 313, 333, 347, 637
BssSI	CACGAG	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	135
Bst2BI	CACGAG	1 cut(s)	207
Bst4CI	ACNGT	1 cut(s)	83
BstBAI	YACGTR	1 cut(s)	146
BstBI	TTCGAA	1 cut(s)	467
BstC8I	GCNNGC	3 cut(s)	251, 359, 663
BstDEI	CTNAG	1 cut(s)	597
BstDSI	CCRYGG	2 cut(s)	135, 329
BstF5I	GGATG	2 cut(s)	182, 609
BstKTI	GATC	5 cut(s)	301, 316, 336, 350, 640
BstMBI	GATC	5 cut(s)	298, 313, 333, 347, 637
BstMCI	CGRYCG	1 cut(s)	33
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstV1I	GCAGC	3 cut(s)	199, 233, 385
BstX2I	RGATCY	2 cut(s)	333, 347
BstYI	RGATCY	2 cut(s)	333, 347
BstZI	CGGCCG	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	3 cut(s)	32, 222, 578
BsuTUI	ATCGAT	1 cut(s)	98
BtgI	CCRYGG	2 cut(s)	135, 329
BtsCI	GGATG	2 cut(s)	182, 609
BveI	ACCTGC	1 cut(s)	362
Cac8I	GCNNGC	3 cut(s)	251, 359, 663
ClaI	ATCGAT	1 cut(s)	98
Csp6I	GTAC	3 cut(s)	24, 88, 233
CviAII	CATG	2 cut(s)	136, 588
CviQI	GTAC	3 cut(s)	24, 88, 233
DdeI	CTNAG	1 cut(s)	597
DpnI	GATC	5 cut(s)	300, 315, 335, 349, 639
DpnII	GATC	5 cut(s)	298, 313, 333, 347, 637
EaeI	YGGCCR	2 cut(s)	30, 220
EagI	CGGCCG	1 cut(s)	30
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	562
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	303, 328
Eco72I	CACGTG	1 cut(s)	146
EcoRV	GATATC	1 cut(s)	562
EcoT14I	CCWWGG	1 cut(s)	135
EcoT22I	ATGCAT	1 cut(s)	504
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	2 cut(s)	139, 591
FalI	AAGNNNNNCTT	2 cut(s)	149, 181
FatI	CATG	2 cut(s)	135, 587
FblI	GTMKAC	1 cut(s)	56
Fnu4HI	GCNGC	6 cut(s)	33, 213, 247, 399, 402, 520
FokI	GGATG	2 cut(s)	169, 616
Fsp4HI	GCNGC	6 cut(s)	33, 213, 247, 399, 402, 520
GluI	GCNGC	6 cut(s)	33, 213, 247, 399, 402, 520
HaeIII	GGCC	3 cut(s)	32, 222, 578
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	2 cut(s)	139, 591
HincII	GTYRAC	1 cut(s)	118
HindII	GTYRAC	1 cut(s)	118
HinfI	GANTC	2 cut(s)	374, 422
HpaI	GTTAAC	1 cut(s)	118
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	1 cut(s)	287
Hpy166II	GTNNAC	2 cut(s)	57, 118
Hpy188I	TCNGA	4 cut(s)	298, 347, 538, 656
Hpy188III	TCNNGA	1 cut(s)	506
Hpy8I	GTNNAC	2 cut(s)	57, 118
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	83
HpyCH4IV	ACGT	1 cut(s)	145
HpyCH4V	TGCA	5 cut(s)	340, 357, 452, 502, 591
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	1 cut(s)	597
HpySE526I	ACGT	1 cut(s)	145
Hsp92II	CATG	2 cut(s)	139, 591
KspAI	GTTAAC	1 cut(s)	118
Kzo9I	GATC	5 cut(s)	298, 313, 333, 347, 637
Lsp1109I	GCAGC	3 cut(s)	199, 233, 385
LweI	GCATC	3 cut(s)	116, 489, 511
MaeII	ACGT	1 cut(s)	145
MaeIII	GTNAC	2 cut(s)	168, 632
MalI	GATC	5 cut(s)	300, 315, 335, 349, 639
MboI	GATC	5 cut(s)	298, 313, 333, 347, 637
MboII	GAAGA	4 cut(s)	308, 425, 445, 569
MflI	RGATCY	2 cut(s)	333, 347
MlsI	TGGCCA	1 cut(s)	222
MluCI	AATT	6 cut(s)	5, 197, 202, 262, 441, 592
MluNI	TGGCCA	1 cut(s)	222
MnlI	CCTC	6 cut(s)	13, 233, 266, 523, 594, 637
Mox20I	TGGCCA	1 cut(s)	222
Mph1103I	ATGCAT	1 cut(s)	504
MscI	TGGCCA	1 cut(s)	222
MseI	TTAA	3 cut(s)	117, 228, 477
MslI	CAYNNNNRTG	1 cut(s)	530
Msp20I	TGGCCA	1 cut(s)	222
MspI	CCGG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	38
NcoI	CCATGG	1 cut(s)	135
NdeII	GATC	5 cut(s)	298, 313, 333, 347, 637
NlaIII	CATG	2 cut(s)	139, 591
NlaIV	GGNNCC	1 cut(s)	335
NmuCI	GTSAC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	504
NspV	TTCGAA	1 cut(s)	467
OliI	CACNNNNGTG	1 cut(s)	530
PaqCI	CACCTGC	1 cut(s)	362
PfeI	GAWTC	2 cut(s)	374, 422
PkrI	GCNGC	6 cut(s)	34, 214, 248, 400, 403, 521
PmaCI	CACGTG	1 cut(s)	146
PmlI	CACGTG	1 cut(s)	146
Ppu21I	YACGTR	1 cut(s)	146
PspCI	CACGTG	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	335
PsuI	RGATCY	2 cut(s)	333, 347
RsaI	GTAC	3 cut(s)	25, 89, 234
RsaNI	GTAC	3 cut(s)	24, 88, 233
RseI	CAYNNNNRTG	1 cut(s)	530
SaqAI	TTAA	3 cut(s)	117, 228, 477
SatI	GCNGC	6 cut(s)	33, 213, 247, 399, 402, 520
Sau3AI	GATC	5 cut(s)	298, 313, 333, 347, 637
SfaNI	GCATC	3 cut(s)	116, 489, 511
SfuI	TTCGAA	1 cut(s)	467
SmiMI	CAYNNNNRTG	1 cut(s)	530
SmlI	CTYRAG	1 cut(s)	628
SmoI	CTYRAG	1 cut(s)	628
Sse9I	AATT	6 cut(s)	5, 197, 202, 262, 441, 592
SsiI	CCGC	4 cut(s)	33, 39, 401, 519
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	83
TaiI	ACGT	1 cut(s)	148
TaqI	TCGA	3 cut(s)	98, 238, 467
TasI	AATT	6 cut(s)	5, 197, 202, 262, 441, 592
TauI	GCSGC	3 cut(s)	35, 404, 522
TfiI	GAWTC	2 cut(s)	374, 422
Tru1I	TTAA	3 cut(s)	117, 228, 477
Tru9I	TTAA	3 cut(s)	117, 228, 477
TseFI	GTSAC	1 cut(s)	168
TseI	GCWGC	3 cut(s)	212, 246, 398
Tsp45I	GTSAC	1 cut(s)	168
TspDTI	ATGAA	4 cut(s)	17, 570, 576, 620
TspGWI	ACGGA	1 cut(s)	318
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	56
Zsp2I	ATGCAT	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.