Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

4762459 .. 4764552

Gene Structure 2094 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g07720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGCCACGTAATCCAGAAAGATCGAAAACCAAATCGGCAAAAGATATTTTGGAGGCCTCCAATAAATATCTGGAACTCCAAAAAAAAAAAAAAATCTTAGATTCTGAGAGGTGGGTGTTTTTGGTAGTTATGGATAATTTCATGGGGGGAGAGTTGAAGGTTTCTATGCAGACCGGTGAGCGGCTGGGCGGGGATGTTGCGTCGGCGGAGGACCCTCCTTCCGACGGCTTGGGTATAGCGGCTCCGACTGAAACTATGTCTACAGAATGGACGGATGAGAAACACAGCATGTACCTGAAATCCATGGAAGCATCATTTGTTAACCGGTTGTATAATTCCATGGATTCGCGTGGTCGGAACTCGCAGAAGGGGAATTCATCGCATCCGAAATTGTCAAGGCAAAAGCAACCCCAGTTTAATTCTCGTGCCCCTTCCGGCCGGTTTAAGGTACTTCGAGGCGGTTGCTGGCAGAAAGTCAATTTTGTAAGAGCTGAGGCTGAAGCAAGGGCAGATGAAGATCTTCTGGTGAATCCGTGGTTCCTGCACTTTAGATCTGCCGGCAAGCCCAAAGAATTTGAATCTCCCATTGTCCAAGAACTGGATGCATCACTATGTGAAGAAGTCGATTCAAGTAGGAAGAAGGAAATGACGGGTGCACCAGCTACATGCTCGACGCAGTTTCATGCATCTCACTCTCAGTTGCGCCATCAGGATATGGTTGGAAGCAACACAGAGGTCTCGGATCAGAATTTTGTCGATGAAGATATCAAAGAAAAGGCAGTTGGTTCATGTGACGGTAAGAGGATGAAAACTCTTACACTTAATACCTCAAGTAACGATCAGGTTGTTCCACTCCGCAAGCCTGCCGGTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

292

Amino Acids

32.54

Weight (kDa)

8.25

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	869
AccB1I	GGYRCC	1 cut(s)	869
AccB7I	CCANNNNNTGG	1 cut(s)	598
AccBSI	CCGCTC	1 cut(s)	181
AccI	GTMKAC	1 cut(s)	260
AccII	CGCG	1 cut(s)	349
AciI	CCGC	6 cut(s)	181, 189, 206, 239, 459, 856
AclWI	GGATC	1 cut(s)	750
AcoI	YGGCCR	1 cut(s)	436
AcsI	RAATTY	3 cut(s)	373, 572, 748
AcuI	CTGAAG	1 cut(s)	519
AdeI	CACNNNGTG	1 cut(s)	614
AfaI	GTAC	3 cut(s)	293, 450, 871
AfiI	CCNNNNNNNGG	4 cut(s)	180, 224, 445, 598
AgeI	ACCGGT	2 cut(s)	173, 324
AgsI	TTSAA	3 cut(s)	157, 578, 630
AjuI	GAANNNNNNNTTGG	2 cut(s)	765, 797
AluBI	AGCT	2 cut(s)	491, 662
AluI	AGCT	2 cut(s)	491, 662
Alw21I	GWGCWC	1 cut(s)	658
Alw26I	GTCTC	1 cut(s)	742
Alw44I	GTGCAC	1 cut(s)	654
AlwI	GGATC	1 cut(s)	750
AoxI	GGCC	2 cut(s)	54, 436
ApaLI	GTGCAC	1 cut(s)	654
ApoI	RAATTY	3 cut(s)	373, 572, 748
AsiGI	ACCGGT	2 cut(s)	173, 324
Asp700I	GAANNNNTTC	1 cut(s)	519
Asp718I	GGTACC	1 cut(s)	869
AspLEI	GCGC	1 cut(s)	705
AspS9I	GGNCC	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	188, 538
AvaII	GGWCC	1 cut(s)	211
BaeGI	GKGCMC	2 cut(s)	430, 658
BanI	GGYRCC	1 cut(s)	869
BauI	CACGAG	1 cut(s)	423
Bbv12I	GWGCWC	1 cut(s)	658
BbvCI	CCTCAGC	1 cut(s)	492
BccI	CCATC	1 cut(s)	714
BceAI	ACGGC	1 cut(s)	241
BcgI	CGANNNNNNTGC	2 cut(s)	444, 478
BcoDI	GTCTC	1 cut(s)	742
BfmI	CTRYAG	1 cut(s)	261
BglII	AGATCT	2 cut(s)	517, 551
BisI	GCNGC	2 cut(s)	182, 240
BlsI	GCNGC	2 cut(s)	183, 241
Bme18I	GGWCC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	211
BmiI	GGNNCC	4 cut(s)	213, 243, 539, 871
BmrI	ACTGGG	1 cut(s)	406
BmsI	GCATC	5 cut(s)	320, 391, 592, 614, 695
BmuI	ACTGGG	1 cut(s)	406
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	814
BsaAI	YACGTR	1 cut(s)	8
BsaBI	GATNNNNATC	1 cut(s)	516
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	3 cut(s)	303, 339, 533
BsaWI	WCCGGW	2 cut(s)	173, 324
Bsc4I	CCNNNNNNNGG	4 cut(s)	180, 224, 445, 598
Bse118I	RCCGGY	5 cut(s)	173, 324, 438, 557, 866
Bse1I	ACTGG	2 cut(s)	412, 603
Bse8I	GATNNNNATC	1 cut(s)	516
BseDI	CCNNGG	3 cut(s)	303, 339, 533
BseGI	GGATG	5 cut(s)	199, 280, 382, 607, 810
BseJI	GATNNNNATC	1 cut(s)	516
BseLI	CCNNNNNNNGG	4 cut(s)	180, 224, 445, 598
BseMII	CTCAG	3 cut(s)	96, 483, 710
BseNI	ACTGG	2 cut(s)	412, 603
BseSI	GKGCMC	2 cut(s)	430, 658
BseX3I	CGGCCG	1 cut(s)	436
BseYI	CCCAGC	1 cut(s)	184
BsgI	GTGCAG	1 cut(s)	527
Bsh1236I	CGCG	1 cut(s)	349
Bsh1285I	CGRYCG	1 cut(s)	439
BshFI	GGCC	2 cut(s)	56, 438
BshNI	GGYRCC	1 cut(s)	869
BshTI	ACCGGT	2 cut(s)	173, 324
BsiEI	CGRYCG	1 cut(s)	439
BsiHKAI	GWGCWC	1 cut(s)	658
BsiSI	CCGG	6 cut(s)	174, 325, 435, 439, 558, 867
BslI	CCNNNNNNNGG	4 cut(s)	180, 224, 445, 598
BsmAI	GTCTC	1 cut(s)	742
BsnI	GGCC	2 cut(s)	56, 438
Bso31I	GGTCTC	1 cut(s)	742
Bsp1286I	GDGCHC	2 cut(s)	430, 658
Bsp143I	GATC	5 cut(s)	20, 517, 551, 742, 838
Bsp19I	CCATGG	2 cut(s)	303, 339
BspACI	CCGC	6 cut(s)	181, 189, 206, 239, 459, 856
BspANI	GGCC	2 cut(s)	56, 438
BspCNI	CTCAG	3 cut(s)	97, 484, 709
BspFNI	CGCG	1 cut(s)	349
BspLI	GGNNCC	4 cut(s)	213, 243, 539, 871
BspPI	GGATC	1 cut(s)	750
BspT107I	GGYRCC	1 cut(s)	869
BspTNI	GGTCTC	1 cut(s)	742
BsrBI	CCGCTC	1 cut(s)	181
BsrFI	RCCGGY	5 cut(s)	173, 324, 438, 557, 866
BsrI	ACTGG	2 cut(s)	412, 603
BssAI	RCCGGY	5 cut(s)	173, 324, 438, 557, 866
BssECI	CCNNGG	3 cut(s)	303, 339, 533
BssMI	GATC	5 cut(s)	20, 517, 551, 742, 838
BssSI	CACGAG	1 cut(s)	423
BssT1I	CCWWGG	2 cut(s)	303, 339
Bst2BI	CACGAG	1 cut(s)	423
Bst4CI	ACNGT	1 cut(s)	797
BstBAI	YACGTR	1 cut(s)	8
BstC8I	GCNNGC	5 cut(s)	467, 559, 563, 860, 864
BstDEI	CTNAG	4 cut(s)	97, 105, 492, 696
BstDSI	CCRYGG	3 cut(s)	303, 339, 533
BstF5I	GGATG	5 cut(s)	199, 280, 382, 607, 810
BstFNI	CGCG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	705
BstKTI	GATC	5 cut(s)	23, 520, 554, 745, 841
BstMAI	GTCTC	1 cut(s)	742
BstMBI	GATC	5 cut(s)	20, 517, 551, 742, 838
BstMCI	CGRYCG	1 cut(s)	439
BstNSI	RCATGY	2 cut(s)	292, 669
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	2 cut(s)	430, 658
BstUI	CGCG	1 cut(s)	349
BstX2I	RGATCY	2 cut(s)	517, 551
BstYI	RGATCY	2 cut(s)	517, 551
BstZI	CGGCCG	1 cut(s)	436
BsuRI	GGCC	2 cut(s)	56, 438
BtgI	CCRYGG	3 cut(s)	303, 339, 533
BtgZI	GCGATG	1 cut(s)	363
BtsCI	GGATG	5 cut(s)	199, 280, 382, 607, 810
Cac8I	GCNNGC	5 cut(s)	467, 559, 563, 860, 864
CfoI	GCGC	1 cut(s)	705
Cfr10I	RCCGGY	5 cut(s)	173, 324, 438, 557, 866
Cfr13I	GGNCC	1 cut(s)	211
CseI	GACGC	2 cut(s)	189, 682
Csp6I	GTAC	3 cut(s)	292, 449, 870
CspAI	ACCGGT	2 cut(s)	173, 324
CviAII	CATG	7 cut(s)	142, 289, 304, 340, 666, 683, 789
CviQI	GTAC	3 cut(s)	292, 449, 870
DdeI	CTNAG	4 cut(s)	97, 105, 492, 696
DpnI	GATC	5 cut(s)	22, 519, 553, 744, 840
DpnII	GATC	5 cut(s)	20, 517, 551, 742, 838
DraIII	CACNNNGTG	1 cut(s)	614
EaeI	YGGCCR	1 cut(s)	436
EagI	CGGCCG	1 cut(s)	436
EciI	GGCGGA	1 cut(s)	221
EclXI	CGGCCG	1 cut(s)	436
Eco130I	CCWWGG	2 cut(s)	303, 339
Eco147I	AGGCCT	1 cut(s)	56
Eco31I	GGTCTC	1 cut(s)	742
Eco32I	GATATC	1 cut(s)	766
Eco47I	GGWCC	1 cut(s)	211
Eco52I	CGGCCG	1 cut(s)	436
Eco57I	CTGAAG	1 cut(s)	519
EcoO109I	RGGNCCY	1 cut(s)	211
EcoRI	GAATTC	1 cut(s)	373
EcoRV	GATATC	1 cut(s)	766
EcoT14I	CCWWGG	2 cut(s)	303, 339
EcoT22I	ATGCAT	2 cut(s)	607, 688
ErhI	CCWWGG	2 cut(s)	303, 339
FaeI	CATG	7 cut(s)	145, 292, 307, 343, 669, 686, 792
FatI	CATG	7 cut(s)	141, 288, 303, 339, 665, 682, 788
FauI	CCCGC	1 cut(s)	182
FblI	GTMKAC	1 cut(s)	260
Fnu4HI	GCNGC	2 cut(s)	182, 240
FokI	GGATG	5 cut(s)	206, 287, 369, 614, 817
Fsp4HI	GCNGC	2 cut(s)	182, 240
GlaI	GCGC	1 cut(s)	704
GluI	GCNGC	2 cut(s)	182, 240
GsaI	CCCAGC	1 cut(s)	188
HaeIII	GGCC	2 cut(s)	56, 438
HapII	CCGG	6 cut(s)	174, 325, 435, 439, 558, 867
HgaI	GACGC	2 cut(s)	189, 682
HhaI	GCGC	1 cut(s)	705
Hin1II	CATG	7 cut(s)	145, 292, 307, 343, 669, 686, 792
Hin6I	GCGC	1 cut(s)	703
HinP1I	GCGC	1 cut(s)	703
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	101, 344, 529, 578, 626
HpaI	GTTAAC	1 cut(s)	322
HpaII	CCGG	6 cut(s)	174, 325, 435, 439, 558, 867
HphI	GGTGA	2 cut(s)	188, 538
Hpy166II	GTNNAC	3 cut(s)	261, 322, 656
Hpy188I	TCNGA	7 cut(s)	106, 223, 246, 357, 387, 742, 747
Hpy188III	TCNNGA	3 cut(s)	14, 71, 710
Hpy8I	GTNNAC	3 cut(s)	261, 322, 656
Hpy99I	CGWCG	3 cut(s)	205, 227, 676
HpyAV	CCTTC	5 cut(s)	151, 228, 361, 441, 634
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	1 cut(s)	7
HpyCH4V	TGCA	5 cut(s)	169, 544, 605, 656, 686
HpyF3I	CTNAG	4 cut(s)	97, 105, 492, 696
HpySE526I	ACGT	1 cut(s)	7
Hsp92II	CATG	7 cut(s)	145, 292, 307, 343, 669, 686, 792
HspAI	GCGC	1 cut(s)	703
KpnI	GGTACC	1 cut(s)	873
KroI	GCCGGC	1 cut(s)	557
KroNI	GCCGGC	1 cut(s)	559
KspAI	GTTAAC	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	20, 517, 551, 742, 838
LmnI	GCTCC	1 cut(s)	247
LweI	GCATC	5 cut(s)	320, 391, 592, 614, 695
MaeII	ACGT	1 cut(s)	7
MaeIII	GTNAC	2 cut(s)	791, 833
MalI	GATC	5 cut(s)	22, 519, 553, 744, 840
MbiI	CCGCTC	1 cut(s)	181
MboI	GATC	5 cut(s)	20, 517, 551, 742, 838
MboII	GAAGA	5 cut(s)	512, 527, 629, 649, 773
MflI	RGATCY	2 cut(s)	517, 551
MhlI	GDGCHC	2 cut(s)	430, 658
MluCI	AATT	8 cut(s)	136, 334, 373, 389, 418, 478, 572, 748
MmeI	TCCRAC	4 cut(s)	246, 269, 335, 700
Mph1103I	ATGCAT	2 cut(s)	607, 688
MroNI	GCCGGC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	519
MseI	TTAA	4 cut(s)	321, 417, 444, 822
MslI	CAYNNNNRTG	1 cut(s)	610
MspI	CCGG	6 cut(s)	174, 325, 435, 439, 558, 867
MvnI	CGCG	1 cut(s)	349
NaeI	GCCGGC	1 cut(s)	559
NcoI	CCATGG	2 cut(s)	303, 339
NdeII	GATC	5 cut(s)	20, 517, 551, 742, 838
NgoMIV	GCCGGC	1 cut(s)	557
NlaIII	CATG	7 cut(s)	145, 292, 307, 343, 669, 686, 792
NlaIV	GGNNCC	4 cut(s)	213, 243, 539, 871
NmuCI	GTSAC	1 cut(s)	791
NsiI	ATGCAT	2 cut(s)	607, 688
NspI	RCATGY	2 cut(s)	292, 669
PceI	AGGCCT	1 cut(s)	56
PdiI	GCCGGC	1 cut(s)	559
PdmI	GAANNNNTTC	1 cut(s)	519
PfeI	GAWTC	5 cut(s)	101, 344, 529, 578, 626
PflMI	CCANNNNNTGG	1 cut(s)	598
PinAI	ACCGGT	2 cut(s)	173, 324
PkrI	GCNGC	2 cut(s)	183, 241
Ppu21I	YACGTR	1 cut(s)	8
PpuMI	RGGWCCY	1 cut(s)	211
Psp5II	RGGWCCY	1 cut(s)	211
PspFI	CCCAGC	1 cut(s)	184
PspN4I	GGNNCC	4 cut(s)	213, 243, 539, 871
PspPI	GGNCC	1 cut(s)	211
PspPPI	RGGWCCY	1 cut(s)	211
PsuI	RGATCY	2 cut(s)	517, 551
RsaI	GTAC	3 cut(s)	293, 450, 871
RsaNI	GTAC	3 cut(s)	292, 449, 870
RseI	CAYNNNNRTG	1 cut(s)	610
SaqAI	TTAA	4 cut(s)	321, 417, 444, 822
SatI	GCNGC	2 cut(s)	182, 240
Sau3AI	GATC	5 cut(s)	20, 517, 551, 742, 838
Sau96I	GGNCC	1 cut(s)	211
SduI	GDGCHC	2 cut(s)	430, 658
SfaNI	GCATC	5 cut(s)	320, 391, 592, 614, 695
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	1 cut(s)	211
SmiMI	CAYNNNNRTG	1 cut(s)	610
SmlI	CTYRAG	1 cut(s)	829
SmoI	CTYRAG	1 cut(s)	829
Sse9I	AATT	8 cut(s)	136, 334, 373, 389, 418, 478, 572, 748
SseBI	AGGCCT	1 cut(s)	56
SsiI	CCGC	6 cut(s)	181, 189, 206, 239, 459, 856
StuI	AGGCCT	1 cut(s)	56
StyI	CCWWGG	2 cut(s)	303, 339
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	1 cut(s)	10
TaqI	TCGA	5 cut(s)	23, 454, 624, 671, 756
TasI	AATT	8 cut(s)	136, 334, 373, 389, 418, 478, 572, 748
TauI	GCSGC	2 cut(s)	184, 242
TfiI	GAWTC	5 cut(s)	101, 344, 529, 578, 626
Tru1I	TTAA	4 cut(s)	321, 417, 444, 822
Tru9I	TTAA	4 cut(s)	321, 417, 444, 822
TseFI	GTSAC	1 cut(s)	791
Tsp45I	GTSAC	1 cut(s)	791
TspDTI	ATGAA	7 cut(s)	130, 366, 528, 671, 774, 777, 821
TspGWI	ACGGA	2 cut(s)	287, 522
Van91I	CCANNNNNTGG	1 cut(s)	598
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	211
XapI	RAATTY	3 cut(s)	373, 572, 748
XceI	RCATGY	2 cut(s)	292, 669
XcmI	CCANNNNNNNNNTGG	1 cut(s)	67
XmiI	GTMKAC	1 cut(s)	260
XmnI	GAANNNNTTC	1 cut(s)	519
Zsp2I	ATGCAT	2 cut(s)	607, 688

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.