Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006237.1

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

7311 .. 9432

Gene Structure 2122 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006237.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggagaatttgagagtaaaagagttgcagatttctgggtcaaggggtggtgagagaccgcatgaagtggaccctccatcggaattgggtactccggccgcaaccgcaacagaaactatgtctactgaatggacagatgagaaacacagtatgtacctaaaatctatggaagcatcgtttgttaaccagttgtataactccatggatacacgtggtcggcacaaggggaacttgtcacatataaaatcatccaagcaaccccaattcaattctcgtgctgcttctggccagtttaaggtacttcgaggtggctgctggcagaaaatcaattttggaagaggtgaagctgaagtaaataagtcagatcaaccttgtggcgatcttctggcaaatccgtggatcctgcacttcagatccacctgcaagccaaaagatgttgaatctcctattctccaagaacaggctgcggctatatgtgaagaagttgattcaagtttgaagaaagaaattacttctgcaccagctacttgttcgaagcagtttaatgtatctcactctcatttgatgcatcaggatatggttggcggcaacacagaggtgtcagaccaaaacttcgctgatgaagatatcaaagagaaaaagcccattacttcatgcaattctaagaggatgaaaactcttatacttcaagcctcaagtaacgatcaggttgttccattcagaaagcctgctgatactgaagatagataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

27.74

Weight (kDa)

6.46

Isoelectric Point (pI)

46.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	428
Acc36I	ACCTGC	1 cut(s)	428
AccI	GTMKAC	1 cut(s)	122
AciI	CCGC	5 cut(s)	59, 99, 105, 467, 585
AclWI	GGATC	3 cut(s)	394, 407, 408
AcoI	YGGCCR	2 cut(s)	96, 286
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	369, 394
AcvI	CACGTG	1 cut(s)	212
AfaI	GTAC	3 cut(s)	91, 155, 300
AfiI	CCNNNNNNNGG	3 cut(s)	79, 295, 460
AflIII	ACRYGT	1 cut(s)	209
AgsI	TTSAA	5 cut(s)	268, 440, 492, 499, 689
AleI	CACNNNNGTG	1 cut(s)	596
AluBI	AGCT	2 cut(s)	347, 524
AluI	AGCT	2 cut(s)	347, 524
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	3 cut(s)	394, 407, 408
AoxI	GGCC	2 cut(s)	96, 286
ApeKI	GCWGC	3 cut(s)	278, 312, 464
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	596, 628
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	2 cut(s)	62, 353
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	70
BalI	TGGCCA	1 cut(s)	288
BamHI	GGATCC	1 cut(s)	399
BauI	CACGAG	1 cut(s)	273
BbrPI	CACGTG	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	265, 299, 451
BccI	CCATC	1 cut(s)	85
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciVI	GTATCC	1 cut(s)	199
BcoDI	GTCTC	1 cut(s)	49
BfuAI	ACCTGC	1 cut(s)	428
BfuI	GTATCC	1 cut(s)	199
BisI	GCNGC	6 cut(s)	99, 279, 313, 465, 468, 586
BlsI	GCNGC	6 cut(s)	100, 280, 314, 466, 469, 587
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	2 cut(s)	72, 401
BmsI	GCATC	3 cut(s)	182, 555, 577
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	1 cut(s)	679
BsaAI	YACGTR	1 cut(s)	212
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	201, 395
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 295, 460
Bse1I	ACTGG	2 cut(s)	187, 289
BseDI	CCNNGG	2 cut(s)	201, 395
BseGI	GGATG	2 cut(s)	248, 675
BseLI	CCNNNNNNNGG	3 cut(s)	79, 295, 460
BseNI	ACTGG	2 cut(s)	187, 289
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	3 cut(s)	265, 299, 451
BsgI	GTGCAG	2 cut(s)	389, 501
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	2 cut(s)	98, 288
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	79, 295, 460
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	2 cut(s)	98, 288
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	533
Bsp143I	GATC	5 cut(s)	364, 379, 399, 413, 703
Bsp19I	CCATGG	1 cut(s)	201
BspACI	CCGC	5 cut(s)	59, 99, 105, 467, 585
BspANI	GGCC	2 cut(s)	98, 288
BspLI	GGNNCC	2 cut(s)	72, 401
BspMI	ACCTGC	1 cut(s)	428
BspPI	GGATC	3 cut(s)	394, 407, 408
BspT104I	TTCGAA	1 cut(s)	533
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	187, 289
BssECI	CCNNGG	2 cut(s)	201, 395
BssMI	GATC	5 cut(s)	364, 379, 399, 413, 703
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	201
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	149
Bst6I	CTCTTC	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	212
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	3 cut(s)	317, 425, 729
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	2 cut(s)	201, 395
BstF5I	GGATG	2 cut(s)	248, 675
BstKTI	GATC	5 cut(s)	367, 382, 402, 416, 706
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	5 cut(s)	364, 379, 399, 413, 703
BstMCI	CGRYCG	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstV1I	GCAGC	3 cut(s)	265, 299, 451
BstX2I	RGATCY	2 cut(s)	399, 413
BstYI	RGATCY	2 cut(s)	399, 413
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	199
BsuRI	GGCC	2 cut(s)	98, 288
BtgI	CCRYGG	2 cut(s)	201, 395
BtsCI	GGATG	2 cut(s)	248, 675
BveI	ACCTGC	1 cut(s)	428
Cac8I	GCNNGC	3 cut(s)	317, 425, 729
Cfr13I	GGNCC	1 cut(s)	70
Csp6I	GTAC	3 cut(s)	90, 154, 299
CviAII	CATG	3 cut(s)	62, 202, 654
CviQI	GTAC	3 cut(s)	90, 154, 299
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	5 cut(s)	366, 381, 401, 415, 705
DpnII	GATC	5 cut(s)	364, 379, 399, 413, 703
EaeI	YGGCCR	2 cut(s)	96, 286
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	331
EarI	CTCTTC	1 cut(s)	331
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	201
Eco31I	GGTCTC	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	1 cut(s)	70
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	369, 394
Eco72I	CACGTG	1 cut(s)	212
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	201
EcoT22I	ATGCAT	1 cut(s)	570
ErhI	CCWWGG	1 cut(s)	201
FaeI	CATG	3 cut(s)	65, 205, 657
FalI	AAGNNNNNCTT	2 cut(s)	215, 247
FatI	CATG	3 cut(s)	61, 201, 653
FblI	GTMKAC	1 cut(s)	122
Fnu4HI	GCNGC	6 cut(s)	99, 279, 313, 465, 468, 586
FokI	GGATG	2 cut(s)	235, 682
Fsp4HI	GCNGC	6 cut(s)	99, 279, 313, 465, 468, 586
GluI	GCNGC	6 cut(s)	99, 279, 313, 465, 468, 586
HaeIII	GGCC	2 cut(s)	98, 288
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	3 cut(s)	65, 205, 657
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	440, 488
HpaI	GTTAAC	1 cut(s)	184
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	2 cut(s)	62, 353
Hpy166II	GTNNAC	3 cut(s)	70, 123, 184
Hpy188I	TCNGA	5 cut(s)	82, 364, 413, 604, 722
Hpy188III	TCNNGA	1 cut(s)	572
Hpy8I	GTNNAC	3 cut(s)	70, 123, 184
HpyCH4III	ACNGT	1 cut(s)	149
HpyCH4IV	ACGT	1 cut(s)	211
HpyCH4V	TGCA	6 cut(s)	28, 406, 423, 518, 568, 657
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	1 cut(s)	663
HpySE526I	ACGT	1 cut(s)	211
Hsp92II	CATG	3 cut(s)	65, 205, 657
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	364, 379, 399, 413, 703
Lsp1109I	GCAGC	3 cut(s)	265, 299, 451
LweI	GCATC	3 cut(s)	182, 555, 577
MaeII	ACGT	1 cut(s)	211
MaeIII	GTNAC	2 cut(s)	234, 698
MalI	GATC	5 cut(s)	366, 381, 401, 415, 705
MboI	GATC	5 cut(s)	364, 379, 399, 413, 703
MboII	GAAGA	5 cut(s)	348, 374, 491, 511, 635
MflI	RGATCY	2 cut(s)	399, 413
MlsI	TGGCCA	1 cut(s)	288
MluCI	AATT	7 cut(s)	7, 83, 263, 268, 328, 507, 658
MluNI	TGGCCA	1 cut(s)	288
MnlI	CCTC	6 cut(s)	84, 299, 332, 589, 660, 703
Mox20I	TGGCCA	1 cut(s)	288
Mph1103I	ATGCAT	1 cut(s)	570
MscI	TGGCCA	1 cut(s)	288
MseI	TTAA	3 cut(s)	183, 294, 543
MslI	CAYNNNNRTG	1 cut(s)	596
Msp20I	TGGCCA	1 cut(s)	288
MspI	CCGG	1 cut(s)	95
MwoI	GCNNNNNNNGC	1 cut(s)	104
NcoI	CCATGG	1 cut(s)	201
NdeII	GATC	5 cut(s)	364, 379, 399, 413, 703
NlaIII	CATG	3 cut(s)	65, 205, 657
NlaIV	GGNNCC	2 cut(s)	72, 401
NmuCI	GTSAC	1 cut(s)	234
NsiI	ATGCAT	1 cut(s)	570
NspV	TTCGAA	1 cut(s)	533
OliI	CACNNNNGTG	1 cut(s)	596
PaqCI	CACCTGC	1 cut(s)	428
PfeI	GAWTC	2 cut(s)	440, 488
PkrI	GCNGC	6 cut(s)	100, 280, 314, 466, 469, 587
PmaCI	CACGTG	1 cut(s)	212
PmlI	CACGTG	1 cut(s)	212
Ppu21I	YACGTR	1 cut(s)	212
PspCI	CACGTG	1 cut(s)	212
PspN4I	GGNNCC	2 cut(s)	72, 401
PspPI	GGNCC	1 cut(s)	70
PsuI	RGATCY	2 cut(s)	399, 413
RsaI	GTAC	3 cut(s)	91, 155, 300
RsaNI	GTAC	3 cut(s)	90, 154, 299
RseI	CAYNNNNRTG	1 cut(s)	596
SaqAI	TTAA	3 cut(s)	183, 294, 543
SatI	GCNGC	6 cut(s)	99, 279, 313, 465, 468, 586
Sau3AI	GATC	5 cut(s)	364, 379, 399, 413, 703
Sau96I	GGNCC	1 cut(s)	70
SfaNI	GCATC	3 cut(s)	182, 555, 577
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	1 cut(s)	70
SmiMI	CAYNNNNRTG	1 cut(s)	596
SmlI	CTYRAG	1 cut(s)	694
SmoI	CTYRAG	1 cut(s)	694
Sse9I	AATT	7 cut(s)	7, 83, 263, 268, 328, 507, 658
SsiI	CCGC	5 cut(s)	59, 99, 105, 467, 585
StyI	CCWWGG	1 cut(s)	201
TaaI	ACNGT	1 cut(s)	149
TaiI	ACGT	1 cut(s)	214
TaqI	TCGA	2 cut(s)	304, 533
TasI	AATT	7 cut(s)	7, 83, 263, 268, 328, 507, 658
TauI	GCSGC	3 cut(s)	101, 470, 588
TfiI	GAWTC	2 cut(s)	440, 488
Tru1I	TTAA	3 cut(s)	183, 294, 543
Tru9I	TTAA	3 cut(s)	183, 294, 543
TseFI	GTSAC	1 cut(s)	234
TseI	GCWGC	3 cut(s)	278, 312, 464
Tsp45I	GTSAC	1 cut(s)	234
TspDTI	ATGAA	4 cut(s)	78, 636, 642, 686
TspGWI	ACGGA	1 cut(s)	384
VpaK11BI	GGWCC	1 cut(s)	70
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	1 cut(s)	122
Zsp2I	ATGCAT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.