Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

51040038 .. 51040631

Gene Structure 594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0362300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGGACAAGACAAAAAACATGGTCAACCAGGAGGCCTTCTTACGACAGCGAATTGACAAAATCGGGGAGAAAATCAGAAAGCTGAAAAGAGACAACTGGGAGAAGCAGATCACTCAAGTCATGTTTGGCTGCTTGAAGGGGAGAACCCTATCTGACCTTGAAAGGAAGGATCTAAATGACCTCACTTTTATAATCGAACAAAACCTCAGGGAGATAGATATGAAGCAGCAAGCTACCGAGGAGCACAACCAAGAGGAGAACCAGCAGAATCAGGTGCAAGCTGCACCAATTGCGGTGGAGCTCGACCTGACGAAGAGGAGTACATTTGGAGAAGGAACCGGTAGAGGTGTGGAGCAGCAGCAACAACACCAGGCCGAGATGGAGGCACAAAATATAGAGCAAATGCAATACCAGATGATACAGGTTGAGGAGCAGATTCAGCAGCAGCAGATGTTCGAACAACAACCTTGGTTTGTAGAAATCATGAACCTGCCACGTACCACCGCAAACGATGGACTTCTTAGACCCACTACCACCACTTCCGTCGGGAGCGTTTGGAGACTACAGCAGTGGCAATGCTACATGCCCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

197

Amino Acids

23.32

Weight (kDa)

5.24

Isoelectric Point (pI)

54.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	191
Acc36I	ACCTGC	1 cut(s)	498
AciI	CCGC	2 cut(s)	293, 504
AclWI	GGATC	1 cut(s)	177
AfaI	GTAC	2 cut(s)	322, 499
AgeI	ACCGGT	1 cut(s)	338
AgsI	TTSAA	2 cut(s)	136, 161
AjnI	CCWGG	2 cut(s)	27, 369
AluBI	AGCT	4 cut(s)	82, 233, 281, 301
AluI	AGCT	4 cut(s)	82, 233, 281, 301
Alw21I	GWGCWC	2 cut(s)	246, 303
Alw26I	GTCTC	2 cut(s)	84, 553
AlwI	GGATC	1 cut(s)	177
AoxI	GGCC	2 cut(s)	33, 372
ApeKI	GCWGC	7 cut(s)	129, 226, 281, 355, 358, 442, 445
AsiGI	ACCGGT	1 cut(s)	338
AsuII	TTCGAA	1 cut(s)	456
AxyI	CCTNAGG	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	303
Bbv12I	GWGCWC	2 cut(s)	246, 303
BbvI	GCAGC	7 cut(s)	116, 238, 268, 367, 370, 454, 457
BccI	CCATC	2 cut(s)	373, 506
BciT130I	CCWGG	2 cut(s)	29, 371
BcoDI	GTCTC	2 cut(s)	84, 553
BfmI	CTRYAG	1 cut(s)	563
BfuAI	ACCTGC	1 cut(s)	498
BisI	GCNGC	7 cut(s)	130, 227, 282, 356, 359, 443, 446
BlsI	GCNGC	7 cut(s)	131, 228, 283, 357, 360, 444, 447
Bme1390I	CCNGG	2 cut(s)	29, 371
BmiI	GGNNCC	1 cut(s)	337
BmrFI	CCNGG	2 cut(s)	29, 371
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
Bpu14I	TTCGAA	1 cut(s)	456
BpuEI	CTTGAG	1 cut(s)	99
BsaAI	YACGTR	1 cut(s)	497
BsaJI	CCNNGG	2 cut(s)	237, 467
BsaWI	WCCGGW	1 cut(s)	338
Bse118I	RCCGGY	1 cut(s)	338
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	206
Bse3DI	GCAATG	1 cut(s)	581
BseBI	CCWGG	2 cut(s)	29, 371
BseDI	CCNNGG	2 cut(s)	237, 467
BseMI	GCAATG	1 cut(s)	581
BseMII	CTCAG	1 cut(s)	220
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	4 cut(s)	254, 269, 331, 443
BseXI	GCAGC	7 cut(s)	116, 238, 268, 367, 370, 454, 457
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	2 cut(s)	35, 374
BshTI	ACCGGT	1 cut(s)	338
BsiHKAI	GWGCWC	2 cut(s)	246, 303
BsiSI	CCGG	1 cut(s)	339
BsmAI	GTCTC	2 cut(s)	84, 553
BsnI	GGCC	2 cut(s)	35, 374
Bsp119I	TTCGAA	1 cut(s)	456
Bsp1286I	GDGCHC	2 cut(s)	246, 303
Bsp143I	GATC	2 cut(s)	108, 169
BspACI	CCGC	2 cut(s)	293, 504
BspANI	GGCC	2 cut(s)	35, 374
BspCNI	CTCAG	1 cut(s)	219
BspHI	TCATGA	1 cut(s)	483
BspLI	GGNNCC	1 cut(s)	337
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	177
BspT104I	TTCGAA	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	338
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	1 cut(s)	338
BssECI	CCNNGG	2 cut(s)	237, 467
BssMI	GATC	2 cut(s)	108, 169
BssT1I	CCWWGG	1 cut(s)	467
Bst2UI	CCWGG	2 cut(s)	29, 371
Bst6I	CTCTTC	1 cut(s)	308
BstAPI	GCANNNNNTGC	1 cut(s)	290
BstBAI	YACGTR	1 cut(s)	497
BstBI	TTCGAA	1 cut(s)	456
BstC8I	GCNNGC	2 cut(s)	231, 279
BstDEI	CTNAG	2 cut(s)	206, 521
BstKTI	GATC	2 cut(s)	111, 172
BstMAI	GTCTC	2 cut(s)	84, 553
BstMBI	GATC	2 cut(s)	108, 169
BstMWI	GCNNNNNNNGC	2 cut(s)	290, 439
BstNI	CCWGG	2 cut(s)	29, 371
BstNSI	RCATGY	1 cut(s)	586
BstSCI	CCNGG	2 cut(s)	27, 369
BstSFI	CTRYAG	1 cut(s)	563
BstV1I	GCAGC	7 cut(s)	116, 238, 268, 367, 370, 454, 457
BstX2I	RGATCY	1 cut(s)	169
BstYI	RGATCY	1 cut(s)	169
Bsu36I	CCTNAGG	1 cut(s)	206
BsuRI	GGCC	2 cut(s)	35, 374
BtsI	GCAGTG	1 cut(s)	575
BtsIMutI	CAGTG	1 cut(s)	575
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	2 cut(s)	231, 279
CciI	TCATGA	1 cut(s)	483
Cfr10I	RCCGGY	1 cut(s)	338
Csp6I	GTAC	2 cut(s)	321, 498
CspAI	ACCGGT	1 cut(s)	338
CspCI	CAANNNNNGTGG	2 cut(s)	276, 311
CviAII	CATG	4 cut(s)	19, 121, 484, 583
CviJI	RGCY	7 cut(s)	35, 82, 129, 233, 281, 301, 374
CviKI_1	RGCY	7 cut(s)	35, 82, 129, 233, 281, 301, 374
CviQI	GTAC	2 cut(s)	321, 498
DdeI	CTNAG	2 cut(s)	206, 521
DpnI	GATC	2 cut(s)	110, 171
DpnII	GATC	2 cut(s)	108, 169
Eam1104I	CTCTTC	1 cut(s)	308
EarI	CTCTTC	1 cut(s)	308
Ecl136II	GAGCTC	1 cut(s)	301
Eco130I	CCWWGG	1 cut(s)	467
Eco147I	AGGCCT	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	303
Eco53kI	GAGCTC	1 cut(s)	301
Eco81I	CCTNAGG	1 cut(s)	206
EcoICRI	GAGCTC	1 cut(s)	301
EcoRII	CCWGG	2 cut(s)	27, 369
EcoT14I	CCWWGG	1 cut(s)	467
EcoT38I	GRGCYC	1 cut(s)	303
ErhI	CCWWGG	1 cut(s)	467
FaeI	CATG	4 cut(s)	22, 124, 487, 586
FaiI	YATR	7 cut(s)	20, 122, 191, 221, 395, 485, 584
FatI	CATG	4 cut(s)	18, 120, 483, 582
Fnu4HI	GCNGC	7 cut(s)	130, 227, 282, 356, 359, 443, 446
FriOI	GRGCYC	1 cut(s)	303
Fsp4HI	GCNGC	7 cut(s)	130, 227, 282, 356, 359, 443, 446
GluI	GCNGC	7 cut(s)	130, 227, 282, 356, 359, 443, 446
HaeIII	GGCC	2 cut(s)	35, 374
HapII	CCGG	1 cut(s)	339
Hin1II	CATG	4 cut(s)	22, 124, 487, 586
HincII	GTYRAC	1 cut(s)	25
HindII	GTYRAC	1 cut(s)	25
HinfI	GANTC	2 cut(s)	268, 436
HpaII	CCGG	1 cut(s)	339
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	2 cut(s)	77, 154
Hpy188III	TCNNGA	2 cut(s)	484, 547
Hpy8I	GTNNAC	1 cut(s)	25
Hpy99I	CGWCG	1 cut(s)	548
HpyAV	CCTTC	4 cut(s)	46, 130, 160, 326
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	277, 284, 406
HpyF10VI	GCNNNNNNNGC	2 cut(s)	290, 439
HpyF3I	CTNAG	2 cut(s)	206, 521
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	4 cut(s)	22, 124, 487, 586
Kzo9I	GATC	2 cut(s)	108, 169
LmnI	GCTCC	5 cut(s)	241, 298, 352, 430, 549
Lsp1109I	GCAGC	7 cut(s)	116, 238, 268, 367, 370, 454, 457
MaeII	ACGT	1 cut(s)	496
MalI	GATC	2 cut(s)	110, 171
MboI	GATC	2 cut(s)	108, 169
MboII	GAAGA	1 cut(s)	325
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	246, 303
MluCI	AATT	2 cut(s)	51, 288
MnlI	CCTC	9 cut(s)	25, 191, 215, 232, 247, 309, 338, 376, 421
MspI	CCGG	1 cut(s)	339
MspR9I	CCNGG	2 cut(s)	29, 371
MunI	CAATTG	1 cut(s)	288
MvaI	CCWGG	2 cut(s)	29, 371
MwoI	GCNNNNNNNGC	2 cut(s)	290, 439
NdeII	GATC	2 cut(s)	108, 169
NlaIII	CATG	4 cut(s)	22, 124, 487, 586
NlaIV	GGNNCC	1 cut(s)	337
NmeAIII	GCCGAG	1 cut(s)	400
NspI	RCATGY	1 cut(s)	586
NspV	TTCGAA	1 cut(s)	456
PagI	TCATGA	1 cut(s)	483
PceI	AGGCCT	1 cut(s)	35
PfeI	GAWTC	2 cut(s)	268, 436
PinAI	ACCGGT	1 cut(s)	338
PkrI	GCNGC	7 cut(s)	131, 228, 283, 357, 360, 444, 447
Ppu21I	YACGTR	1 cut(s)	497
PsiI	TTATAA	1 cut(s)	191
Psp124BI	GAGCTC	1 cut(s)	303
Psp6I	CCWGG	2 cut(s)	27, 369
PspGI	CCWGG	2 cut(s)	27, 369
PspN4I	GGNNCC	1 cut(s)	337
PsuI	RGATCY	1 cut(s)	169
RsaI	GTAC	2 cut(s)	322, 499
RsaNI	GTAC	2 cut(s)	321, 498
SacI	GAGCTC	1 cut(s)	303
SatI	GCNGC	7 cut(s)	130, 227, 282, 356, 359, 443, 446
Sau3AI	GATC	2 cut(s)	108, 169
ScrFI	CCNGG	2 cut(s)	29, 371
SduI	GDGCHC	2 cut(s)	246, 303
SfcI	CTRYAG	1 cut(s)	563
SfuI	TTCGAA	1 cut(s)	456
SmlI	CTYRAG	1 cut(s)	114
SmoI	CTYRAG	1 cut(s)	114
Sse9I	AATT	2 cut(s)	51, 288
SseBI	AGGCCT	1 cut(s)	35
SsiI	CCGC	2 cut(s)	293, 504
SstI	GAGCTC	1 cut(s)	303
StuI	AGGCCT	1 cut(s)	35
StyD4I	CCNGG	2 cut(s)	27, 369
StyI	CCWWGG	1 cut(s)	467
TaiI	ACGT	1 cut(s)	499
TaqI	TCGA	3 cut(s)	195, 303, 456
TasI	AATT	2 cut(s)	51, 288
TatI	WGTACW	1 cut(s)	320
TfiI	GAWTC	2 cut(s)	268, 436
TscAI	CASTG	1 cut(s)	575
TseI	GCWGC	7 cut(s)	129, 226, 281, 355, 358, 442, 445
TspDTI	ATGAA	2 cut(s)	236, 500
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	1 cut(s)	575
XceI	RCATGY	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.