Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

25567353 .. 25570385

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g34400.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGAATAATTTCAGAGTAGAAGAGTTGCAGGTTTCTGGGTTCAATGGTGAAGTGGACCCTCCTTCAGAACTGGGTACTCCGGCCGCAACAGAAACCATGTCTACAGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATTCGCGTGGTCGGCACACACATAAGGGAAACTTGTCACATATAAAATCATCCAAGCAACCCCAGTTCAACTCTCGAGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGCTGGCTGCTGGCAGAAAATCAATTTCGGAAGAGGTGAAGCTGAGGTAAGTAAGTCAGATGGTGGTGATCTTCTGGCAAATCCGTGGATCTTGCACTTCAGATCCACTTGCAAGCCAAAAGATGTTGAATCTCCTATTGTCCAAGAACAGGTTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTTGAAGCAGTTTAATGTATCTCACTCTCATTTGACGCACCAGGATATGGTTGGCGGCAACACAGAAGTGTCAGACCAGAACTTCGCTGATGAAGAAATCAAAGAGGAAAAGTCCATTACTTCATGCAATTCTAAGAGGATGAAAAGTCTTATACTTCAAGCCTCAAGTAACGATCAGGTTGTTCCATTCCGGAAGCCTGCTCATACTGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

26.83

Weight (kDa)

6.0

Isoelectric Point (pI)

44.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	19
AccB7I	CCANNNNNTGG	1 cut(s)	550
AccI	GTMKAC	1 cut(s)	101
AccII	CGCG	1 cut(s)	190
AccIII	TCCGGA	1 cut(s)	693
AciI	CCGC	2 cut(s)	84, 558
AclWI	GGATC	2 cut(s)	386, 387
AcoI	YGGCCR	2 cut(s)	81, 271
AcuI	CTGAAG	2 cut(s)	48, 373
AfaI	GTAC	3 cut(s)	76, 134, 285
AfiI	CCNNNNNNNGG	3 cut(s)	280, 439, 550
AgsI	TTSAA	7 cut(s)	43, 253, 419, 465, 472, 508, 662
AjnI	CCWGG	1 cut(s)	543
AleI	CACNNNNGTG	1 cut(s)	569
AluBI	AGCT	4 cut(s)	263, 293, 332, 497
AluI	AGCT	4 cut(s)	263, 293, 332, 497
AlwI	GGATC	2 cut(s)	386, 387
Ama87I	CYCGRG	1 cut(s)	258
Aor13HI	TCCGGA	1 cut(s)	693
AoxI	GGCC	2 cut(s)	81, 271
ApeKI	GCWGC	2 cut(s)	263, 297
ArsI	GACNNNNNNTTYG	2 cut(s)	569, 601
Asp700I	GAANNNNTTC	1 cut(s)	8
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	3 cut(s)	59, 338, 368
AvaI	CYCGRG	1 cut(s)	258
AvaII	GGWCC	1 cut(s)	55
BalI	TGGCCA	1 cut(s)	273
BbvCI	CCTCAGC	1 cut(s)	333
BbvI	GCAGC	2 cut(s)	250, 284
BccI	CCATC	1 cut(s)	344
BcgI	CGANNNNNNTGC	2 cut(s)	279, 313
BciT130I	CCWGG	1 cut(s)	545
BfmI	CTRYAG	1 cut(s)	102
BfuAI	ACCTGC	1 cut(s)	19
BisI	GCNGC	4 cut(s)	84, 264, 298, 559
BlsI	GCNGC	4 cut(s)	85, 265, 299, 560
Bme1390I	CCNGG	1 cut(s)	545
Bme18I	GGWCC	1 cut(s)	55
BmeT110I	CYCGRG	1 cut(s)	258
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	57
BmrFI	CCNGG	1 cut(s)	545
BmrI	ACTGGG	2 cut(s)	80, 241
BmsI	GCATC	1 cut(s)	161
BmuI	ACTGGG	2 cut(s)	80, 241
Bpu10I	CCTNAGC	1 cut(s)	333
BpuEI	CTTGAG	1 cut(s)	652
BsaJI	CCNNGG	2 cut(s)	180, 374
BsaWI	WCCGGW	1 cut(s)	693
Bsc4I	CCNNNNNNNGG	3 cut(s)	280, 439, 550
Bse1I	ACTGG	4 cut(s)	75, 166, 247, 274
BseAI	TCCGGA	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	545
BseDI	CCNNGG	2 cut(s)	180, 374
BseGI	GGATG	2 cut(s)	233, 648
BseLI	CCNNNNNNNGG	3 cut(s)	280, 439, 550
BseMII	CTCAG	1 cut(s)	324
BseNI	ACTGG	4 cut(s)	75, 166, 247, 274
BseX3I	CGGCCG	1 cut(s)	81
BseXI	GCAGC	2 cut(s)	250, 284
BsgI	GTGCAG	1 cut(s)	474
Bsh1236I	CGCG	1 cut(s)	190
Bsh1285I	CGRYCG	1 cut(s)	84
BshFI	GGCC	2 cut(s)	83, 273
BsiEI	CGRYCG	1 cut(s)	84
BsiHKCI	CYCGRG	1 cut(s)	258
BsiSI	CCGG	2 cut(s)	80, 694
BslI	CCNNNNNNNGG	3 cut(s)	280, 439, 550
BsnI	GGCC	2 cut(s)	83, 273
BsoBI	CYCGRG	1 cut(s)	258
Bsp13I	TCCGGA	1 cut(s)	693
Bsp143I	GATC	4 cut(s)	358, 378, 392, 676
Bsp19I	CCATGG	1 cut(s)	180
BspACI	CCGC	2 cut(s)	84, 558
BspANI	GGCC	2 cut(s)	83, 273
BspCNI	CTCAG	1 cut(s)	325
BspEI	TCCGGA	1 cut(s)	693
BspFNI	CGCG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	386, 387
BsrI	ACTGG	4 cut(s)	75, 166, 247, 274
BssECI	CCNNGG	2 cut(s)	180, 374
BssMI	GATC	4 cut(s)	358, 378, 392, 676
BssT1I	CCWWGG	1 cut(s)	180
Bst2UI	CCWGG	1 cut(s)	545
Bst4CI	ACNGT	1 cut(s)	128
Bst6I	CTCTTC	2 cut(s)	15, 316
BstC8I	GCNNGC	4 cut(s)	295, 302, 404, 702
BstDEI	CTNAG	2 cut(s)	333, 636
BstDSI	CCRYGG	2 cut(s)	180, 374
BstF5I	GGATG	2 cut(s)	233, 648
BstFNI	CGCG	1 cut(s)	190
BstKTI	GATC	4 cut(s)	361, 381, 395, 679
BstMBI	GATC	4 cut(s)	358, 378, 392, 676
BstMCI	CGRYCG	1 cut(s)	84
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	545
BstSCI	CCNGG	1 cut(s)	543
BstSFI	CTRYAG	1 cut(s)	102
BstUI	CGCG	1 cut(s)	190
BstV1I	GCAGC	2 cut(s)	250, 284
BstX2I	RGATCY	2 cut(s)	378, 392
BstYI	RGATCY	2 cut(s)	378, 392
BstZI	CGGCCG	1 cut(s)	81
BsuRI	GGCC	2 cut(s)	83, 273
BtgI	CCRYGG	2 cut(s)	180, 374
BtsCI	GGATG	2 cut(s)	233, 648
BveI	ACCTGC	1 cut(s)	19
Cac8I	GCNNGC	4 cut(s)	295, 302, 404, 702
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	547
Csp6I	GTAC	3 cut(s)	75, 133, 284
CviAII	CATG	3 cut(s)	97, 181, 627
CviQI	GTAC	3 cut(s)	75, 133, 284
DdeI	CTNAG	2 cut(s)	333, 636
DpnI	GATC	4 cut(s)	360, 380, 394, 678
DpnII	GATC	4 cut(s)	358, 378, 392, 676
EaeI	YGGCCR	2 cut(s)	81, 271
EagI	CGGCCG	1 cut(s)	81
Eam1104I	CTCTTC	2 cut(s)	15, 316
EarI	CTCTTC	2 cut(s)	15, 316
EclXI	CGGCCG	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	180
Eco47I	GGWCC	1 cut(s)	55
Eco52I	CGGCCG	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	48, 373
Eco88I	CYCGRG	1 cut(s)	258
EcoRII	CCWGG	1 cut(s)	543
EcoT14I	CCWWGG	1 cut(s)	180
ErhI	CCWWGG	1 cut(s)	180
FaeI	CATG	3 cut(s)	100, 184, 630
FalI	AAGNNNNNCTT	2 cut(s)	200, 232
FatI	CATG	3 cut(s)	96, 180, 626
FblI	GTMKAC	1 cut(s)	101
Fnu4HI	GCNGC	4 cut(s)	84, 264, 298, 559
FokI	GGATG	2 cut(s)	220, 655
Fsp4HI	GCNGC	4 cut(s)	84, 264, 298, 559
GluI	GCNGC	4 cut(s)	84, 264, 298, 559
HaeIII	GGCC	2 cut(s)	83, 273
HapII	CCGG	2 cut(s)	80, 694
HgaI	GACGC	1 cut(s)	547
Hin1II	CATG	3 cut(s)	100, 184, 630
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HinfI	GANTC	3 cut(s)	185, 419, 461
HpaI	GTTAAC	1 cut(s)	163
HpaII	CCGG	2 cut(s)	80, 694
HphI	GGTGA	3 cut(s)	59, 338, 368
Hpy166II	GTNNAC	3 cut(s)	55, 102, 163
Hpy188I	TCNGA	6 cut(s)	14, 67, 320, 349, 392, 577
Hpy188III	TCNNGA	2 cut(s)	258, 694
Hpy8I	GTNNAC	3 cut(s)	55, 102, 163
HpyAV	CCTTC	1 cut(s)	72
HpyCH4III	ACNGT	1 cut(s)	128
HpyCH4V	TGCA	5 cut(s)	28, 385, 402, 491, 630
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	2 cut(s)	333, 636
Hsp92II	CATG	3 cut(s)	100, 184, 630
Kpn2I	TCCGGA	1 cut(s)	693
KspAI	GTTAAC	1 cut(s)	163
Kzo9I	GATC	4 cut(s)	358, 378, 392, 676
Lsp1109I	GCAGC	2 cut(s)	250, 284
LweI	GCATC	1 cut(s)	161
MaeIII	GTNAC	2 cut(s)	219, 671
MalI	GATC	4 cut(s)	360, 380, 394, 678
MboI	GATC	4 cut(s)	358, 378, 392, 676
MboII	GAAGA	6 cut(s)	32, 333, 353, 464, 484, 608
MflI	RGATCY	2 cut(s)	378, 392
MlsI	TGGCCA	1 cut(s)	273
MluCI	AATT	4 cut(s)	7, 313, 480, 631
MluNI	TGGCCA	1 cut(s)	273
MnlI	CCTC	6 cut(s)	69, 317, 328, 601, 633, 676
Mox20I	TGGCCA	1 cut(s)	273
MroI	TCCGGA	1 cut(s)	693
MroXI	GAANNNNTTC	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	273
MseI	TTAA	3 cut(s)	162, 279, 516
MslI	CAYNNNNRTG	1 cut(s)	569
Msp20I	TGGCCA	1 cut(s)	273
MspI	CCGG	2 cut(s)	80, 694
MspR9I	CCNGG	1 cut(s)	545
MvaI	CCWGG	1 cut(s)	545
MvnI	CGCG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	196
NcoI	CCATGG	1 cut(s)	180
NdeII	GATC	4 cut(s)	358, 378, 392, 676
NlaIII	CATG	3 cut(s)	100, 184, 630
NlaIV	GGNNCC	1 cut(s)	57
NmuCI	GTSAC	1 cut(s)	219
OliI	CACNNNNGTG	1 cut(s)	569
PaeR7I	CTCGAG	1 cut(s)	258
PdmI	GAANNNNTTC	1 cut(s)	8
PfeI	GAWTC	3 cut(s)	185, 419, 461
PflMI	CCANNNNNTGG	1 cut(s)	550
PkrI	GCNGC	4 cut(s)	85, 265, 299, 560
Psp6I	CCWGG	1 cut(s)	543
PspGI	CCWGG	1 cut(s)	543
PspN4I	GGNNCC	1 cut(s)	57
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	2 cut(s)	378, 392
RsaI	GTAC	3 cut(s)	76, 134, 285
RsaNI	GTAC	3 cut(s)	75, 133, 284
RseI	CAYNNNNRTG	1 cut(s)	569
SaqAI	TTAA	3 cut(s)	162, 279, 516
SatI	GCNGC	4 cut(s)	84, 264, 298, 559
Sau3AI	GATC	4 cut(s)	358, 378, 392, 676
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	545
SfaNI	GCATC	1 cut(s)	161
SfcI	CTRYAG	1 cut(s)	102
Sfr274I	CTCGAG	1 cut(s)	258
SinI	GGWCC	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	258
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	258, 667
SmoI	CTYRAG	2 cut(s)	258, 667
Sse9I	AATT	4 cut(s)	7, 313, 480, 631
SsiI	CCGC	2 cut(s)	84, 558
StyD4I	CCNGG	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	180
TaaI	ACNGT	1 cut(s)	128
TaqI	TCGA	2 cut(s)	259, 289
TasI	AATT	4 cut(s)	7, 313, 480, 631
TauI	GCSGC	2 cut(s)	86, 561
TfiI	GAWTC	3 cut(s)	185, 419, 461
Tru1I	TTAA	3 cut(s)	162, 279, 516
Tru9I	TTAA	3 cut(s)	162, 279, 516
TseFI	GTSAC	1 cut(s)	219
TseI	GCWGC	2 cut(s)	263, 297
Tsp45I	GTSAC	1 cut(s)	219
TspDTI	ATGAA	4 cut(s)	17, 609, 615, 659
TspGWI	ACGGA	1 cut(s)	363
Van91I	CCANNNNNTGG	1 cut(s)	550
VpaK11BI	GGWCC	1 cut(s)	55
XcmI	CCANNNNNNNNNTGG	1 cut(s)	551
XhoI	CTCGAG	1 cut(s)	258
XmiI	GTMKAC	1 cut(s)	101
XmnI	GAANNNNTTC	1 cut(s)	8

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.