Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

63979278 .. 63982598

Gene Structure 3321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG473700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCTACTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGTGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATTCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGAGGTGTCAGACCAAAACTTCGCTGATGAAGATATCAAAGAGAAAAAGGCCATTACTTCATGCAATTCTAAGAGGATGAAAGCTCTTATACTTCAAGCCTCAAGTAACGATCAGGTTGTTCCATTCAGAAAGCCTGCTGATACTGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

23.54

Weight (kDa)

7.64

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	350, 468
AclWI	GGATC	3 cut(s)	277, 290, 291
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	252, 277
AcvI	CACGTG	1 cut(s)	95
AfaI	GTAC	2 cut(s)	38, 183
AfiI	CCNNNNNNNGG	2 cut(s)	178, 343
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	5 cut(s)	151, 323, 375, 382, 572
AleI	CACNNNNGTG	1 cut(s)	479
AluBI	AGCT	3 cut(s)	230, 407, 560
AluI	AGCT	3 cut(s)	230, 407, 560
AlwI	GGATC	3 cut(s)	277, 290, 291
AoxI	GGCC	2 cut(s)	169, 525
ApeKI	GCWGC	3 cut(s)	161, 195, 347
ArsI	GACNNNNNNTTYG	2 cut(s)	479, 511
AsuHPI	GGTGA	2 cut(s)	236, 272
AsuII	TTCGAA	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	95
BbvI	GCAGC	3 cut(s)	148, 182, 334
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciVI	GTATCC	1 cut(s)	82
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	5 cut(s)	162, 196, 348, 351, 469
BlsI	GCNGC	5 cut(s)	163, 197, 349, 352, 470
BmiI	GGNNCC	1 cut(s)	284
BmsI	GCATC	3 cut(s)	65, 438, 460
Bpu14I	TTCGAA	1 cut(s)	416
BpuEI	CTTGAG	1 cut(s)	562
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	84, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 343
Bse1I	ACTGG	2 cut(s)	70, 172
BseDI	CCNNGG	2 cut(s)	84, 278
BseGI	GGATG	2 cut(s)	131, 558
BseLI	CCNNNNNNNGG	2 cut(s)	178, 343
BseNI	ACTGG	2 cut(s)	70, 172
BseXI	GCAGC	3 cut(s)	148, 182, 334
BsgI	GTGCAG	2 cut(s)	272, 384
BshFI	GGCC	2 cut(s)	171, 527
BslI	CCNNNNNNNGG	2 cut(s)	178, 343
BsnI	GGCC	2 cut(s)	171, 527
Bsp119I	TTCGAA	1 cut(s)	416
Bsp143I	GATC	5 cut(s)	247, 262, 282, 296, 586
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	2 cut(s)	350, 468
BspANI	GGCC	2 cut(s)	171, 527
BspLI	GGNNCC	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	277, 290, 291
BspT104I	TTCGAA	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	70, 172
BssECI	CCNNGG	2 cut(s)	84, 278
BssMI	GATC	5 cut(s)	247, 262, 282, 296, 586
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	1 cut(s)	32
Bst6I	CTCTTC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	3 cut(s)	200, 308, 612
BstDEI	CTNAG	1 cut(s)	546
BstDSI	CCRYGG	2 cut(s)	84, 278
BstF5I	GGATG	2 cut(s)	131, 558
BstKTI	GATC	5 cut(s)	250, 265, 285, 299, 589
BstMBI	GATC	5 cut(s)	247, 262, 282, 296, 586
BstV1I	GCAGC	3 cut(s)	148, 182, 334
BstX2I	RGATCY	2 cut(s)	282, 296
BstYI	RGATCY	2 cut(s)	282, 296
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	2 cut(s)	171, 527
BtgI	CCRYGG	2 cut(s)	84, 278
BtsCI	GGATG	2 cut(s)	131, 558
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	3 cut(s)	200, 308, 612
Csp6I	GTAC	2 cut(s)	37, 182
CviAII	CATG	2 cut(s)	85, 537
CviQI	GTAC	2 cut(s)	37, 182
DdeI	CTNAG	1 cut(s)	546
DpnI	GATC	5 cut(s)	249, 264, 284, 298, 588
DpnII	GATC	5 cut(s)	247, 262, 282, 296, 586
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	84
Eco32I	GATATC	1 cut(s)	511
Eco57I	CTGAAG	2 cut(s)	252, 277
Eco72I	CACGTG	1 cut(s)	95
EcoRV	GATATC	1 cut(s)	511
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	2 cut(s)	88, 540
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	2 cut(s)	84, 536
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	5 cut(s)	162, 196, 348, 351, 469
FokI	GGATG	2 cut(s)	118, 565
Fsp4HI	GCNGC	5 cut(s)	162, 196, 348, 351, 469
GluI	GCNGC	5 cut(s)	162, 196, 348, 351, 469
HaeIII	GGCC	2 cut(s)	171, 527
Hin1II	CATG	2 cut(s)	88, 540
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	323, 371
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	236, 272
Hpy166II	GTNNAC	2 cut(s)	6, 67
Hpy188I	TCNGA	4 cut(s)	247, 296, 487, 605
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	2 cut(s)	6, 67
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	289, 306, 401, 451, 540
HpyF3I	CTNAG	1 cut(s)	546
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	2 cut(s)	88, 540
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	5 cut(s)	247, 262, 282, 296, 586
Lsp1109I	GCAGC	3 cut(s)	148, 182, 334
LweI	GCATC	3 cut(s)	65, 438, 460
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	2 cut(s)	117, 581
MalI	GATC	5 cut(s)	249, 264, 284, 298, 588
MboI	GATC	5 cut(s)	247, 262, 282, 296, 586
MboII	GAAGA	5 cut(s)	231, 257, 374, 394, 518
MflI	RGATCY	2 cut(s)	282, 296
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	5 cut(s)	146, 151, 211, 390, 541
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	5 cut(s)	182, 215, 472, 543, 586
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	3 cut(s)	66, 177, 426
MslI	CAYNNNNRTG	1 cut(s)	479
Msp20I	TGGCCA	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	5 cut(s)	247, 262, 282, 296, 586
NlaIII	CATG	2 cut(s)	88, 540
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	416
OliI	CACNNNNGTG	1 cut(s)	479
PaqCI	CACCTGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	323, 371
PkrI	GCNGC	5 cut(s)	163, 197, 349, 352, 470
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	282, 296
RsaI	GTAC	2 cut(s)	38, 183
RsaNI	GTAC	2 cut(s)	37, 182
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	3 cut(s)	66, 177, 426
SatI	GCNGC	5 cut(s)	162, 196, 348, 351, 469
Sau3AI	GATC	5 cut(s)	247, 262, 282, 296, 586
SfaNI	GCATC	3 cut(s)	65, 438, 460
SfuI	TTCGAA	1 cut(s)	416
SmiMI	CAYNNNNRTG	1 cut(s)	479
SmlI	CTYRAG	1 cut(s)	577
SmoI	CTYRAG	1 cut(s)	577
Sse9I	AATT	5 cut(s)	146, 151, 211, 390, 541
SsiI	CCGC	2 cut(s)	350, 468
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	1 cut(s)	32
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	187, 416
TasI	AATT	5 cut(s)	146, 151, 211, 390, 541
TauI	GCSGC	2 cut(s)	353, 471
TfiI	GAWTC	2 cut(s)	323, 371
Tru1I	TTAA	3 cut(s)	66, 177, 426
Tru9I	TTAA	3 cut(s)	66, 177, 426
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	3 cut(s)	161, 195, 347
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	519, 525, 569
TspGWI	ACGGA	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.