Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

3653782 .. 3657021

Gene Structure 3240 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00160720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGAAATTTGGAAGGAAAGAGGGTACCCCGGCCGCAACAGAAACTATGTCTACTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCCCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGTGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAACAGATGTTGAATCTCCTATCCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGAGGTGTCAGACCAAAACTTCGCTGATGAAGATATCAAAGAGAAAAAGGCCATTACTTCATGCAATTCTAAGAGGATGAAAACTCTTATACTTCAAGCCTCAAGTAACGATCAGGTTGTTCCATTCAGAAAGCCTGCTGATACTGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

225

Amino Acids

25.15

Weight (kDa)

7.64

Isoelectric Point (pI)

44.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	356
Acc36I	ACCTGC	1 cut(s)	356
Acc65I	GGTACC	1 cut(s)	23
AccB1I	GGYRCC	1 cut(s)	23
AccI	GTMKAC	1 cut(s)	50
AciI	CCGC	3 cut(s)	33, 395, 513
AclWI	GGATC	3 cut(s)	322, 335, 336
AcoI	YGGCCR	2 cut(s)	30, 214
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	2 cut(s)	297, 322
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	25, 83, 228
AfiI	CCNNNNNNNGG	2 cut(s)	223, 388
AflIII	ACRYGT	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	196, 368, 420, 427, 617
AleI	CACNNNNGTG	1 cut(s)	524
AluBI	AGCT	2 cut(s)	275, 452
AluI	AGCT	2 cut(s)	275, 452
AlwI	GGATC	3 cut(s)	322, 335, 336
AoxI	GGCC	3 cut(s)	30, 214, 570
ApeKI	GCWGC	3 cut(s)	206, 240, 392
ApoI	RAATTY	1 cut(s)	5
ArsI	GACNNNNNNTTYG	2 cut(s)	524, 556
Asp718I	GGTACC	1 cut(s)	23
AsuC2I	CCSGG	1 cut(s)	29
AsuHPI	GGTGA	2 cut(s)	281, 317
AsuII	TTCGAA	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	216
BamHI	GGATCC	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	23
BbrPI	CACGTG	1 cut(s)	140
BbvI	GCAGC	3 cut(s)	193, 227, 379
BcgI	CGANNNNNNTGC	2 cut(s)	222, 256
BciVI	GTATCC	1 cut(s)	127
BcnI	CCSGG	1 cut(s)	29
BfuAI	ACCTGC	1 cut(s)	356
BfuI	GTATCC	1 cut(s)	127
BisI	GCNGC	6 cut(s)	33, 207, 241, 393, 396, 514
BlsI	GCNGC	6 cut(s)	34, 208, 242, 394, 397, 515
Bme1390I	CCNGG	1 cut(s)	29
BmiI	GGNNCC	2 cut(s)	25, 329
BmrFI	CCNGG	1 cut(s)	29
BmsI	GCATC	3 cut(s)	110, 483, 505
Bpu14I	TTCGAA	1 cut(s)	461
BpuEI	CTTGAG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	29
BsaAI	YACGTR	1 cut(s)	140
BsaJI	CCNNGG	3 cut(s)	27, 129, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 388
Bse1I	ACTGG	2 cut(s)	115, 217
BseDI	CCNNGG	3 cut(s)	27, 129, 323
BseGI	GGATG	2 cut(s)	176, 603
BseLI	CCNNNNNNNGG	2 cut(s)	223, 388
BseNI	ACTGG	2 cut(s)	115, 217
BseX3I	CGGCCG	1 cut(s)	30
BseXI	GCAGC	3 cut(s)	193, 227, 379
BsgI	GTGCAG	2 cut(s)	317, 429
Bsh1285I	CGRYCG	1 cut(s)	33
BshFI	GGCC	3 cut(s)	32, 216, 572
BshNI	GGYRCC	1 cut(s)	23
BsiEI	CGRYCG	1 cut(s)	33
BsiSI	CCGG	1 cut(s)	29
BslI	CCNNNNNNNGG	2 cut(s)	223, 388
BsnI	GGCC	3 cut(s)	32, 216, 572
Bsp119I	TTCGAA	1 cut(s)	461
Bsp143I	GATC	5 cut(s)	292, 307, 327, 341, 631
Bsp19I	CCATGG	1 cut(s)	129
BspACI	CCGC	3 cut(s)	33, 395, 513
BspANI	GGCC	3 cut(s)	32, 216, 572
BspLI	GGNNCC	2 cut(s)	25, 329
BspMI	ACCTGC	1 cut(s)	356
BspPI	GGATC	3 cut(s)	322, 335, 336
BspT104I	TTCGAA	1 cut(s)	461
BspT107I	GGYRCC	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	115, 217
BssECI	CCNNGG	3 cut(s)	27, 129, 323
BssMI	GATC	5 cut(s)	292, 307, 327, 341, 631
BssT1I	CCWWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	77
Bst6I	CTCTTC	1 cut(s)	259
BstBAI	YACGTR	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	461
BstC8I	GCNNGC	3 cut(s)	245, 353, 657
BstDEI	CTNAG	1 cut(s)	591
BstDSI	CCRYGG	2 cut(s)	129, 323
BstF5I	GGATG	2 cut(s)	176, 603
BstKTI	GATC	5 cut(s)	295, 310, 330, 344, 634
BstMBI	GATC	5 cut(s)	292, 307, 327, 341, 631
BstMCI	CGRYCG	1 cut(s)	33
BstSCI	CCNGG	1 cut(s)	27
BstV1I	GCAGC	3 cut(s)	193, 227, 379
BstX2I	RGATCY	2 cut(s)	327, 341
BstYI	RGATCY	2 cut(s)	327, 341
BstZI	CGGCCG	1 cut(s)	30
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	3 cut(s)	32, 216, 572
BtgI	CCRYGG	2 cut(s)	129, 323
BtsCI	GGATG	2 cut(s)	176, 603
BveI	ACCTGC	1 cut(s)	356
Cac8I	GCNNGC	3 cut(s)	245, 353, 657
Csp6I	GTAC	3 cut(s)	24, 82, 227
CviAII	CATG	2 cut(s)	130, 582
CviQI	GTAC	3 cut(s)	24, 82, 227
DdeI	CTNAG	1 cut(s)	591
DpnI	GATC	5 cut(s)	294, 309, 329, 343, 633
DpnII	GATC	5 cut(s)	292, 307, 327, 341, 631
EaeI	YGGCCR	2 cut(s)	30, 214
EagI	CGGCCG	1 cut(s)	30
Eam1104I	CTCTTC	1 cut(s)	259
EarI	CTCTTC	1 cut(s)	259
EclXI	CGGCCG	1 cut(s)	30
Eco130I	CCWWGG	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	556
Eco52I	CGGCCG	1 cut(s)	30
Eco57I	CTGAAG	2 cut(s)	297, 322
Eco72I	CACGTG	1 cut(s)	140
EcoRV	GATATC	1 cut(s)	556
EcoT14I	CCWWGG	1 cut(s)	129
EcoT22I	ATGCAT	1 cut(s)	498
ErhI	CCWWGG	1 cut(s)	129
FaeI	CATG	2 cut(s)	133, 585
FalI	AAGNNNNNCTT	2 cut(s)	143, 175
FatI	CATG	2 cut(s)	129, 581
FblI	GTMKAC	1 cut(s)	50
Fnu4HI	GCNGC	6 cut(s)	33, 207, 241, 393, 396, 514
FokI	GGATG	2 cut(s)	163, 610
Fsp4HI	GCNGC	6 cut(s)	33, 207, 241, 393, 396, 514
GluI	GCNGC	6 cut(s)	33, 207, 241, 393, 396, 514
HaeIII	GGCC	3 cut(s)	32, 216, 572
HapII	CCGG	1 cut(s)	29
Hin1II	CATG	2 cut(s)	133, 585
HincII	GTYRAC	1 cut(s)	112
HindII	GTYRAC	1 cut(s)	112
HinfI	GANTC	2 cut(s)	368, 416
HpaI	GTTAAC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	29
HphI	GGTGA	2 cut(s)	281, 317
Hpy166II	GTNNAC	2 cut(s)	51, 112
Hpy188I	TCNGA	4 cut(s)	292, 341, 532, 650
Hpy188III	TCNNGA	1 cut(s)	500
Hpy8I	GTNNAC	2 cut(s)	51, 112
HpyAV	CCTTC	1 cut(s)	6
HpyCH4III	ACNGT	1 cut(s)	77
HpyCH4IV	ACGT	1 cut(s)	139
HpyCH4V	TGCA	5 cut(s)	334, 351, 446, 496, 585
HpyF3I	CTNAG	1 cut(s)	591
HpySE526I	ACGT	1 cut(s)	139
Hsp92II	CATG	2 cut(s)	133, 585
KpnI	GGTACC	1 cut(s)	27
KspAI	GTTAAC	1 cut(s)	112
Kzo9I	GATC	5 cut(s)	292, 307, 327, 341, 631
Lsp1109I	GCAGC	3 cut(s)	193, 227, 379
LweI	GCATC	3 cut(s)	110, 483, 505
MaeII	ACGT	1 cut(s)	139
MaeIII	GTNAC	2 cut(s)	162, 626
MalI	GATC	5 cut(s)	294, 309, 329, 343, 633
MboI	GATC	5 cut(s)	292, 307, 327, 341, 631
MboII	GAAGA	5 cut(s)	276, 302, 419, 439, 563
MflI	RGATCY	2 cut(s)	327, 341
MlsI	TGGCCA	1 cut(s)	216
MluCI	AATT	6 cut(s)	5, 191, 196, 256, 435, 586
MluNI	TGGCCA	1 cut(s)	216
MnlI	CCTC	7 cut(s)	13, 227, 260, 389, 517, 588, 631
Mox20I	TGGCCA	1 cut(s)	216
Mph1103I	ATGCAT	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	216
MseI	TTAA	3 cut(s)	111, 222, 471
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	216
MspI	CCGG	1 cut(s)	29
MspR9I	CCNGG	1 cut(s)	29
NciI	CCSGG	1 cut(s)	29
NcoI	CCATGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	292, 307, 327, 341, 631
NlaIII	CATG	2 cut(s)	133, 585
NlaIV	GGNNCC	2 cut(s)	25, 329
NmuCI	GTSAC	1 cut(s)	162
NsiI	ATGCAT	1 cut(s)	498
NspV	TTCGAA	1 cut(s)	461
OliI	CACNNNNGTG	1 cut(s)	524
PaqCI	CACCTGC	1 cut(s)	356
PfeI	GAWTC	2 cut(s)	368, 416
PkrI	GCNGC	6 cut(s)	34, 208, 242, 394, 397, 515
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
Ppu21I	YACGTR	1 cut(s)	140
PspCI	CACGTG	1 cut(s)	140
PspN4I	GGNNCC	2 cut(s)	25, 329
PsuI	RGATCY	2 cut(s)	327, 341
RsaI	GTAC	3 cut(s)	25, 83, 228
RsaNI	GTAC	3 cut(s)	24, 82, 227
RseI	CAYNNNNRTG	1 cut(s)	524
SaqAI	TTAA	3 cut(s)	111, 222, 471
SatI	GCNGC	6 cut(s)	33, 207, 241, 393, 396, 514
Sau3AI	GATC	5 cut(s)	292, 307, 327, 341, 631
ScrFI	CCNGG	1 cut(s)	29
SfaNI	GCATC	3 cut(s)	110, 483, 505
SfuI	TTCGAA	1 cut(s)	461
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	1 cut(s)	622
SmoI	CTYRAG	1 cut(s)	622
Sse9I	AATT	6 cut(s)	5, 191, 196, 256, 435, 586
SsiI	CCGC	3 cut(s)	33, 395, 513
StyD4I	CCNGG	1 cut(s)	27
StyI	CCWWGG	1 cut(s)	129
TaaI	ACNGT	1 cut(s)	77
TaiI	ACGT	1 cut(s)	142
TaqI	TCGA	2 cut(s)	232, 461
TasI	AATT	6 cut(s)	5, 191, 196, 256, 435, 586
TauI	GCSGC	3 cut(s)	35, 398, 516
TfiI	GAWTC	2 cut(s)	368, 416
Tru1I	TTAA	3 cut(s)	111, 222, 471
Tru9I	TTAA	3 cut(s)	111, 222, 471
TseFI	GTSAC	1 cut(s)	162
TseI	GCWGC	3 cut(s)	206, 240, 392
Tsp45I	GTSAC	1 cut(s)	162
TspDTI	ATGAA	4 cut(s)	17, 564, 570, 614
TspGWI	ACGGA	1 cut(s)	312
XapI	RAATTY	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	50
Zsp2I	ATGCAT	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.