Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Forward (+)

3621949 .. 3624041

Gene Structure 2093 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000010682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGAGAATTTGAGAGTAAAAGAGTTGCAGGTTTCTGGGTTAAGGGGTGGTGAGAGACCACATGAAGTGGACCCTCCTTCGGAATTGGGTACTCCGGCCGCAACAGAAACTATGTCTACTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGACACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGTGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGGTCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATCCTCCAAGAACAGGCTGTGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGAGGTGTCAGACCAAAACTTCGCTGATGAAGATATCAAAGAGAAAAAGGCCATTACTTCATGCAATTCTAAGAGGATGAAAACTCGTATACTTCAAGCCGCAAGTAACGATCAGGTTGTTCCATTCAGAAAGCCTGCTGATACTGAAGATAGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

248

Amino Acids

27.61

Weight (kDa)

6.71

Isoelectric Point (pI)

45.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	422
Acc36I	ACCTGC	2 cut(s)	19, 422
AccI	GTMKAC	3 cut(s)	116, 211, 676
AciI	CCGC	3 cut(s)	99, 579, 687
AclWI	GGATC	2 cut(s)	388, 401
AcoI	YGGCCR	2 cut(s)	96, 280
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	2 cut(s)	363, 388
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	91, 149, 294
AfiI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
AflIII	ACRYGT	1 cut(s)	203
AgsI	TTSAA	5 cut(s)	262, 434, 486, 493, 683
AleI	CACNNNNGTG	1 cut(s)	590
AluBI	AGCT	2 cut(s)	341, 518
AluI	AGCT	2 cut(s)	341, 518
Alw26I	GTCTC	1 cut(s)	49
AlwI	GGATC	2 cut(s)	388, 401
AoxI	GGCC	3 cut(s)	96, 280, 636
ApeKI	GCWGC	2 cut(s)	272, 306
ApoI	RAATTY	1 cut(s)	7
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspS9I	GGNCC	2 cut(s)	70, 408
AsuHPI	GGTGA	3 cut(s)	62, 347, 383
AsuII	TTCGAA	1 cut(s)	527
AvaII	GGWCC	2 cut(s)	70, 408
BalI	TGGCCA	1 cut(s)	282
BamHI	GGATCC	1 cut(s)	393
BauI	CACGAG	1 cut(s)	267
BbrPI	CACGTG	1 cut(s)	206
BbvI	GCAGC	2 cut(s)	259, 293
BcgI	CGANNNNNNTGC	2 cut(s)	288, 322
BciVI	GTATCC	1 cut(s)	193
BcoDI	GTCTC	1 cut(s)	49
BfuAI	ACCTGC	2 cut(s)	19, 422
BfuI	GTATCC	1 cut(s)	193
BisI	GCNGC	5 cut(s)	99, 273, 307, 580, 687
BlsI	GCNGC	5 cut(s)	100, 274, 308, 581, 688
Bme18I	GGWCC	2 cut(s)	70, 408
BmgT120I	GGNCC	2 cut(s)	70, 408
BmiI	GGNNCC	2 cut(s)	72, 395
BmsI	GCATC	3 cut(s)	176, 549, 571
Bpu14I	TTCGAA	1 cut(s)	527
BsaAI	YACGTR	1 cut(s)	206
BsaI	GGTCTC	1 cut(s)	49
BsaJI	CCNNGG	2 cut(s)	195, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 289, 454
Bse1I	ACTGG	2 cut(s)	181, 283
BseDI	CCNNGG	2 cut(s)	195, 389
BseGI	GGATG	2 cut(s)	242, 669
BseLI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BseNI	ACTGG	2 cut(s)	181, 283
BseX3I	CGGCCG	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	259, 293
BsgI	GTGCAG	2 cut(s)	383, 495
Bsh1285I	CGRYCG	1 cut(s)	99
BshFI	GGCC	3 cut(s)	98, 282, 638
BsiEI	CGRYCG	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	95
BslI	CCNNNNNNNGG	3 cut(s)	79, 289, 454
BsmAI	GTCTC	1 cut(s)	49
BsnI	GGCC	3 cut(s)	98, 282, 638
Bso31I	GGTCTC	1 cut(s)	49
Bsp119I	TTCGAA	1 cut(s)	527
Bsp143I	GATC	4 cut(s)	358, 373, 393, 697
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	3 cut(s)	99, 579, 687
BspANI	GGCC	3 cut(s)	98, 282, 638
BspLI	GGNNCC	2 cut(s)	72, 395
BspMI	ACCTGC	2 cut(s)	19, 422
BspPI	GGATC	2 cut(s)	388, 401
BspT104I	TTCGAA	1 cut(s)	527
BspTNI	GGTCTC	1 cut(s)	49
BsrI	ACTGG	2 cut(s)	181, 283
BssECI	CCNNGG	2 cut(s)	195, 389
BssMI	GATC	4 cut(s)	358, 373, 393, 697
BssNAI	GTATAC	1 cut(s)	677
BssSI	CACGAG	1 cut(s)	267
BssT1I	CCWWGG	1 cut(s)	195
Bst1107I	GTATAC	1 cut(s)	677
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	143
Bst6I	CTCTTC	1 cut(s)	325
BstBAI	YACGTR	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	527
BstC8I	GCNNGC	3 cut(s)	311, 419, 723
BstDEI	CTNAG	1 cut(s)	657
BstDSI	CCRYGG	2 cut(s)	195, 389
BstF5I	GGATG	2 cut(s)	242, 669
BstKTI	GATC	4 cut(s)	361, 376, 396, 700
BstMAI	GTCTC	1 cut(s)	49
BstMBI	GATC	4 cut(s)	358, 373, 393, 697
BstMCI	CGRYCG	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	259, 293
BstX2I	RGATCY	1 cut(s)	393
BstYI	RGATCY	1 cut(s)	393
BstZ17I	GTATAC	1 cut(s)	677
BstZI	CGGCCG	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	193
BsuRI	GGCC	3 cut(s)	98, 282, 638
BtgI	CCRYGG	2 cut(s)	195, 389
BtsCI	GGATG	2 cut(s)	242, 669
BveI	ACCTGC	2 cut(s)	19, 422
Cac8I	GCNNGC	3 cut(s)	311, 419, 723
Cfr13I	GGNCC	2 cut(s)	70, 408
Csp6I	GTAC	3 cut(s)	90, 148, 293
CviAII	CATG	3 cut(s)	62, 196, 648
CviQI	GTAC	3 cut(s)	90, 148, 293
DdeI	CTNAG	1 cut(s)	657
DpnI	GATC	4 cut(s)	360, 375, 395, 699
DpnII	GATC	4 cut(s)	358, 373, 393, 697
EaeI	YGGCCR	2 cut(s)	96, 280
EagI	CGGCCG	1 cut(s)	96
Eam1104I	CTCTTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	325
EclXI	CGGCCG	1 cut(s)	96
Eco130I	CCWWGG	1 cut(s)	195
Eco31I	GGTCTC	1 cut(s)	49
Eco32I	GATATC	1 cut(s)	622
Eco47I	GGWCC	2 cut(s)	70, 408
Eco52I	CGGCCG	1 cut(s)	96
Eco57I	CTGAAG	2 cut(s)	363, 388
Eco72I	CACGTG	1 cut(s)	206
EcoRV	GATATC	1 cut(s)	622
EcoT14I	CCWWGG	1 cut(s)	195
EcoT22I	ATGCAT	1 cut(s)	564
ErhI	CCWWGG	1 cut(s)	195
FaeI	CATG	3 cut(s)	65, 199, 651
FalI	AAGNNNNNCTT	2 cut(s)	209, 241
FatI	CATG	3 cut(s)	61, 195, 647
FblI	GTMKAC	3 cut(s)	116, 211, 676
Fnu4HI	GCNGC	5 cut(s)	99, 273, 307, 580, 687
FokI	GGATG	2 cut(s)	229, 676
Fsp4HI	GCNGC	5 cut(s)	99, 273, 307, 580, 687
GluI	GCNGC	5 cut(s)	99, 273, 307, 580, 687
HaeIII	GGCC	3 cut(s)	98, 282, 638
HapII	CCGG	1 cut(s)	95
Hin1II	CATG	3 cut(s)	65, 199, 651
HincII	GTYRAC	2 cut(s)	178, 212
HindII	GTYRAC	2 cut(s)	178, 212
HinfI	GANTC	2 cut(s)	434, 482
HpaI	GTTAAC	1 cut(s)	178
HpaII	CCGG	1 cut(s)	95
HphI	GGTGA	3 cut(s)	62, 347, 383
Hpy166II	GTNNAC	6 cut(s)	70, 117, 178, 212, 411, 677
Hpy188I	TCNGA	4 cut(s)	82, 358, 598, 716
Hpy188III	TCNNGA	1 cut(s)	566
Hpy8I	GTNNAC	6 cut(s)	70, 117, 178, 212, 411, 677
HpyAV	CCTTC	1 cut(s)	87
HpyCH4III	ACNGT	1 cut(s)	143
HpyCH4IV	ACGT	1 cut(s)	205
HpyCH4V	TGCA	6 cut(s)	28, 400, 417, 512, 562, 651
HpyF3I	CTNAG	1 cut(s)	657
HpySE526I	ACGT	1 cut(s)	205
Hsp92II	CATG	3 cut(s)	65, 199, 651
KspAI	GTTAAC	1 cut(s)	178
Kzo9I	GATC	4 cut(s)	358, 373, 393, 697
Lsp1109I	GCAGC	2 cut(s)	259, 293
LweI	GCATC	3 cut(s)	176, 549, 571
MaeII	ACGT	1 cut(s)	205
MaeIII	GTNAC	2 cut(s)	228, 692
MalI	GATC	4 cut(s)	360, 375, 395, 699
MboI	GATC	4 cut(s)	358, 373, 393, 697
MboII	GAAGA	5 cut(s)	342, 368, 485, 505, 629
MflI	RGATCY	1 cut(s)	393
MlsI	TGGCCA	1 cut(s)	282
MluCI	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
MluNI	TGGCCA	1 cut(s)	282
MnlI	CCTC	6 cut(s)	84, 293, 326, 455, 583, 654
Mox20I	TGGCCA	1 cut(s)	282
Mph1103I	ATGCAT	1 cut(s)	564
MscI	TGGCCA	1 cut(s)	282
MseI	TTAA	4 cut(s)	41, 177, 288, 537
MslI	CAYNNNNRTG	1 cut(s)	590
Msp20I	TGGCCA	1 cut(s)	282
MspI	CCGG	1 cut(s)	95
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	4 cut(s)	358, 373, 393, 697
NlaIII	CATG	3 cut(s)	65, 199, 651
NlaIV	GGNNCC	2 cut(s)	72, 395
NmuCI	GTSAC	1 cut(s)	228
NsiI	ATGCAT	1 cut(s)	564
NspV	TTCGAA	1 cut(s)	527
OliI	CACNNNNGTG	1 cut(s)	590
PaqCI	CACCTGC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	434, 482
PkrI	GCNGC	5 cut(s)	100, 274, 308, 581, 688
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
Ppu21I	YACGTR	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	206
PspN4I	GGNNCC	2 cut(s)	72, 395
PspPI	GGNCC	2 cut(s)	70, 408
PsuI	RGATCY	1 cut(s)	393
RsaI	GTAC	3 cut(s)	91, 149, 294
RsaNI	GTAC	3 cut(s)	90, 148, 293
RseI	CAYNNNNRTG	1 cut(s)	590
SalI	GTCGAC	1 cut(s)	210
SaqAI	TTAA	4 cut(s)	41, 177, 288, 537
SatI	GCNGC	5 cut(s)	99, 273, 307, 580, 687
Sau3AI	GATC	4 cut(s)	358, 373, 393, 697
Sau96I	GGNCC	2 cut(s)	70, 408
SfaNI	GCATC	3 cut(s)	176, 549, 571
SfuI	TTCGAA	1 cut(s)	527
SinI	GGWCC	2 cut(s)	70, 408
SmiMI	CAYNNNNRTG	1 cut(s)	590
Sse9I	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
SsiI	CCGC	3 cut(s)	99, 579, 687
StyI	CCWWGG	1 cut(s)	195
TaaI	ACNGT	1 cut(s)	143
TaiI	ACGT	1 cut(s)	208
TaqI	TCGA	3 cut(s)	211, 298, 527
TasI	AATT	7 cut(s)	7, 83, 257, 262, 322, 501, 652
TauI	GCSGC	3 cut(s)	101, 582, 689
TfiI	GAWTC	2 cut(s)	434, 482
Tru1I	TTAA	4 cut(s)	41, 177, 288, 537
Tru9I	TTAA	4 cut(s)	41, 177, 288, 537
TseFI	GTSAC	1 cut(s)	228
TseI	GCWGC	2 cut(s)	272, 306
Tsp45I	GTSAC	1 cut(s)	228
TspDTI	ATGAA	4 cut(s)	78, 630, 636, 680
TspGWI	ACGGA	1 cut(s)	378
VpaK11BI	GGWCC	2 cut(s)	70, 408
XapI	RAATTY	1 cut(s)	7
XmiI	GTMKAC	3 cut(s)	116, 211, 676
Zsp2I	ATGCAT	1 cut(s)	564

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.