Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0004506

Physical Location & Seq

Genomic Coordinates Reverse (-)

65398378 .. 65401946

Gene Structure 3569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG471200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTCTACTGAATGGACAGATGAGAAACACAGTATGTACCTAAAATCTATGGAAGCATCGTTTGTTAACCAGTTGTATAACTCCATGGATACACGTGGTCGGCACAAGGGGAACTTGTCACATATAAAATCATCCAAGCAACCCCAATTCAATTCTCGTGCTGCTTCTGGCCAGTTTAAGGTACTTCGAGGTGGCTGCTGGCAGAAAATCAATTTTGGAAGAGGTGAAGCTGAAGTAAATAAGTCAGATCAACCTTGTGGCGATCTTCTGGCAAATCCGTGGATCCTGCACTTCAGATCCACCTGCAAGCCAAAAGATGTTGAATCTCCTATTCTCCAAGAACAGGCTGCGGCTATATGTGAAGAAGTTGATTCAAGTTTGAAGAAAGAAATTACTTCTGCACCAGCTACTTGTTCGAAGCAGTTTAATGTATCTCACTCTCATTTGATGCATCAGGATATGGTTGGCGGCAACACAGGTGCTCTCAGCTATATCTTACTGTGCTTTCCCTTAATTATAGTAGGCAATTTGTGTGTGGCAATATTTTCTTACTCAGCAGCTTTTGATTGGTGTTTTGGTGTACCTGTCCTGTCTCGTATGCTATTTGTTGGCACAATAGATTATCACCCTGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

23.46

Weight (kDa)

7.61

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004506)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G42900 AT5G42900 AT5G42900
fragaria_vesca	FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400 FvH4_2g34400
malus_domestica	MD08G1101100.v1.1 MD15G1082300.v1.1
prunus_persica	Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1 Prupe.1G435100_v2.0.a1
pyrus_communis	pycom08g08170 pycom15g07720
rosa_chinensis	RchiOBHm_Chr6g0307971
rosa_laevigata	RLG00000010682
rosa_multiflora	Rmu_sc0006237.1_g000002
rosa_roxburghii	Rroxscaffold_7G00160720
rosa_rugosa	Rorug06G0362300 Rorug06G0362400 Rorug06G0362500 Rorug06G0362600.1 Rorug06G0362700 Rorug06G0362800
rosa_samantha	Rh6AG471200 Rh6BG482200 Rh6CG487600 Rh6DG473700
rosa_wichuraiana	Rw6G041150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	311
Acc36I	ACCTGC	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	5
AciI	CCGC	2 cut(s)	350, 468
AclWI	GGATC	3 cut(s)	277, 290, 291
AcoI	YGGCCR	1 cut(s)	169
AcuI	CTGAAG	2 cut(s)	252, 277
AcvI	CACGTG	1 cut(s)	95
AfaI	GTAC	3 cut(s)	38, 183, 582
AfiI	CCNNNNNNNGG	2 cut(s)	178, 343
AflIII	ACRYGT	1 cut(s)	92
AgsI	TTSAA	4 cut(s)	151, 323, 375, 382
AluBI	AGCT	4 cut(s)	230, 407, 489, 560
AluI	AGCT	4 cut(s)	230, 407, 489, 560
Alw21I	GWGCWC	1 cut(s)	484
Alw26I	GTCTC	1 cut(s)	597
AlwI	GGATC	3 cut(s)	277, 290, 291
AoxI	GGCC	1 cut(s)	169
ApeKI	GCWGC	4 cut(s)	161, 195, 347, 557
AsuHPI	GGTGA	2 cut(s)	236, 617
AsuII	TTCGAA	1 cut(s)	416
BalI	TGGCCA	1 cut(s)	171
BamHI	GGATCC	1 cut(s)	282
BauI	CACGAG	1 cut(s)	156
BbrPI	CACGTG	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	484
BbvI	GCAGC	4 cut(s)	148, 182, 334, 569
BcgI	CGANNNNNNTGC	2 cut(s)	177, 211
BciVI	GTATCC	1 cut(s)	82
BcoDI	GTCTC	1 cut(s)	597
BfuAI	ACCTGC	1 cut(s)	311
BfuI	GTATCC	1 cut(s)	82
BisI	GCNGC	6 cut(s)	162, 196, 348, 351, 469, 558
BlsI	GCNGC	6 cut(s)	163, 197, 349, 352, 470, 559
BmiI	GGNNCC	1 cut(s)	284
BmsI	GCATC	3 cut(s)	65, 438, 460
Bpu14I	TTCGAA	1 cut(s)	416
BsaAI	YACGTR	1 cut(s)	95
BsaJI	CCNNGG	2 cut(s)	84, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 343
Bse1I	ACTGG	2 cut(s)	70, 172
BseDI	CCNNGG	2 cut(s)	84, 278
BseGI	GGATG	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	178, 343
BseMII	CTCAG	2 cut(s)	499, 567
BseNI	ACTGG	2 cut(s)	70, 172
BseXI	GCAGC	4 cut(s)	148, 182, 334, 569
BsgI	GTGCAG	2 cut(s)	272, 384
BshFI	GGCC	1 cut(s)	171
BsiHKAI	GWGCWC	1 cut(s)	484
BslI	CCNNNNNNNGG	2 cut(s)	178, 343
BsmAI	GTCTC	1 cut(s)	597
BsnI	GGCC	1 cut(s)	171
Bsp119I	TTCGAA	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	484
Bsp143I	GATC	4 cut(s)	247, 262, 282, 296
Bsp19I	CCATGG	1 cut(s)	84
BspACI	CCGC	2 cut(s)	350, 468
BspANI	GGCC	1 cut(s)	171
BspCNI	CTCAG	2 cut(s)	498, 566
BspLI	GGNNCC	1 cut(s)	284
BspMI	ACCTGC	1 cut(s)	311
BspPI	GGATC	3 cut(s)	277, 290, 291
BspT104I	TTCGAA	1 cut(s)	416
BsrI	ACTGG	2 cut(s)	70, 172
BssECI	CCNNGG	2 cut(s)	84, 278
BssMI	GATC	4 cut(s)	247, 262, 282, 296
BssSI	CACGAG	1 cut(s)	156
BssT1I	CCWWGG	1 cut(s)	84
Bst2BI	CACGAG	1 cut(s)	156
Bst4CI	ACNGT	2 cut(s)	32, 501
Bst6I	CTCTTC	1 cut(s)	214
BstBAI	YACGTR	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	416
BstC8I	GCNNGC	2 cut(s)	200, 308
BstDEI	CTNAG	2 cut(s)	485, 553
BstDSI	CCRYGG	2 cut(s)	84, 278
BstF5I	GGATG	1 cut(s)	131
BstKTI	GATC	4 cut(s)	250, 265, 285, 299
BstMAI	GTCTC	1 cut(s)	597
BstMBI	GATC	4 cut(s)	247, 262, 282, 296
BstV1I	GCAGC	4 cut(s)	148, 182, 334, 569
BstX2I	RGATCY	2 cut(s)	282, 296
BstYI	RGATCY	2 cut(s)	282, 296
BsuI	GTATCC	1 cut(s)	82
BsuRI	GGCC	1 cut(s)	171
BtgI	CCRYGG	2 cut(s)	84, 278
BtsCI	GGATG	1 cut(s)	131
BveI	ACCTGC	1 cut(s)	311
Cac8I	GCNNGC	2 cut(s)	200, 308
Csp6I	GTAC	3 cut(s)	37, 182, 581
CviAII	CATG	1 cut(s)	85
CviJI	RGCY	9 cut(s)	171, 195, 230, 310, 347, 353, 407, 489, 560
CviKI_1	RGCY	9 cut(s)	171, 195, 230, 310, 347, 353, 407, 489, 560
CviQI	GTAC	3 cut(s)	37, 182, 581
DdeI	CTNAG	2 cut(s)	485, 553
DpnI	GATC	4 cut(s)	249, 264, 284, 298
DpnII	GATC	4 cut(s)	247, 262, 282, 296
EaeI	YGGCCR	1 cut(s)	169
Eam1104I	CTCTTC	1 cut(s)	214
EarI	CTCTTC	1 cut(s)	214
Eco130I	CCWWGG	1 cut(s)	84
Eco57I	CTGAAG	2 cut(s)	252, 277
Eco72I	CACGTG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	84
EcoT22I	ATGCAT	1 cut(s)	453
ErhI	CCWWGG	1 cut(s)	84
FaeI	CATG	1 cut(s)	88
FalI	AAGNNNNNCTT	2 cut(s)	98, 130
FatI	CATG	1 cut(s)	84
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	6 cut(s)	162, 196, 348, 351, 469, 558
FokI	GGATG	1 cut(s)	118
Fsp4HI	GCNGC	6 cut(s)	162, 196, 348, 351, 469, 558
GluI	GCNGC	6 cut(s)	162, 196, 348, 351, 469, 558
HaeIII	GGCC	1 cut(s)	171
Hin1II	CATG	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	67
HindII	GTYRAC	1 cut(s)	67
HinfI	GANTC	2 cut(s)	323, 371
HpaI	GTTAAC	1 cut(s)	67
HphI	GGTGA	2 cut(s)	236, 617
Hpy166II	GTNNAC	3 cut(s)	6, 67, 581
Hpy188I	TCNGA	2 cut(s)	247, 296
Hpy188III	TCNNGA	1 cut(s)	455
Hpy8I	GTNNAC	3 cut(s)	6, 67, 581
HpyCH4III	ACNGT	2 cut(s)	32, 501
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	5 cut(s)	289, 306, 401, 451, 632
HpyF3I	CTNAG	2 cut(s)	485, 553
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	1 cut(s)	88
KspAI	GTTAAC	1 cut(s)	67
Kzo9I	GATC	4 cut(s)	247, 262, 282, 296
Lsp1109I	GCAGC	4 cut(s)	148, 182, 334, 569
LweI	GCATC	3 cut(s)	65, 438, 460
MaeII	ACGT	1 cut(s)	94
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	4 cut(s)	249, 264, 284, 298
MboI	GATC	4 cut(s)	247, 262, 282, 296
MboII	GAAGA	4 cut(s)	231, 257, 374, 394
MflI	RGATCY	2 cut(s)	282, 296
MhlI	GDGCHC	1 cut(s)	484
MlsI	TGGCCA	1 cut(s)	171
MluCI	AATT	6 cut(s)	146, 151, 211, 390, 513, 526
MluNI	TGGCCA	1 cut(s)	171
MnlI	CCTC	2 cut(s)	182, 215
Mox20I	TGGCCA	1 cut(s)	171
Mph1103I	ATGCAT	1 cut(s)	453
MscI	TGGCCA	1 cut(s)	171
MseI	TTAA	4 cut(s)	66, 177, 426, 512
Msp20I	TGGCCA	1 cut(s)	171
NcoI	CCATGG	1 cut(s)	84
NdeII	GATC	4 cut(s)	247, 262, 282, 296
NlaIII	CATG	1 cut(s)	88
NlaIV	GGNNCC	1 cut(s)	284
NmuCI	GTSAC	1 cut(s)	117
NsiI	ATGCAT	1 cut(s)	453
NspV	TTCGAA	1 cut(s)	416
PaqCI	CACCTGC	1 cut(s)	311
PfeI	GAWTC	2 cut(s)	323, 371
PkrI	GCNGC	6 cut(s)	163, 197, 349, 352, 470, 559
PmaCI	CACGTG	1 cut(s)	95
PmlI	CACGTG	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	95
PspCI	CACGTG	1 cut(s)	95
PspN4I	GGNNCC	1 cut(s)	284
PsuI	RGATCY	2 cut(s)	282, 296
RsaI	GTAC	3 cut(s)	38, 183, 582
RsaNI	GTAC	3 cut(s)	37, 182, 581
SaqAI	TTAA	4 cut(s)	66, 177, 426, 512
SatI	GCNGC	6 cut(s)	162, 196, 348, 351, 469, 558
Sau3AI	GATC	4 cut(s)	247, 262, 282, 296
SduI	GDGCHC	1 cut(s)	484
SfaNI	GCATC	3 cut(s)	65, 438, 460
SfuI	TTCGAA	1 cut(s)	416
Sse9I	AATT	6 cut(s)	146, 151, 211, 390, 513, 526
SsiI	CCGC	2 cut(s)	350, 468
SspI	AATATT	1 cut(s)	543
StyI	CCWWGG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	32, 501
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	2 cut(s)	187, 416
TasI	AATT	6 cut(s)	146, 151, 211, 390, 513, 526
TauI	GCSGC	2 cut(s)	353, 471
TfiI	GAWTC	2 cut(s)	323, 371
Tru1I	TTAA	4 cut(s)	66, 177, 426, 512
Tru9I	TTAA	4 cut(s)	66, 177, 426, 512
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	4 cut(s)	161, 195, 347, 557
Tsp45I	GTSAC	1 cut(s)	117
TspGWI	ACGGA	1 cut(s)	267
XmiI	GTMKAC	1 cut(s)	5
Zsp2I	ATGCAT	1 cut(s)	453

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.