AT5G47030

ATP synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0003919
Physical Location & Seq
Forward (+)
19090150 .. 19092416
2267 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47030.1

Sequence Viewer

Length: 612 bp
ATGTTTAAACAAGCTTCTCGTCTCCTCTCCCGATCTGTCGCCGCCGCATCTTCCAAATCGGTGACGACTCGTGCCTTTTCAACGGAACTTCCATCGACGCTCGATTCCACTTTCGTCGAGGCATGGAAGAAAGTCGCACCGAATATGGACCCACCGCAGACTCCTTCTGCTTTCATGAAACCTCGTCCTTCCACTCCTTCTTCTATCCCGACGAAGCTCACCGTCAATTTTGTCCTCCCTTACACATCTGAGCTTACCGGGAAAGAGGTCGACATGGTCATCATTCCCGCATCAACAGGACAAATGGGTGTCTTGCCCGGACACGTTCCAACAATTGCTGAGCTAAAACCTGGCATCATGTCCGTCCATGAAGGCACTGACGTGAAGAAATACTTCTTGAGCAGTGGTTTTGCATTCCTCCACGCAAATTCCGTCGCTGACATAATCGCGGTGGAAGCTGTGCCGCTTGACCACATTGACCCTAGCCAAGTCCAAAAGGGTTTAGCTGAGTTCCAACAGAAACTTGCTTCTGCCACAACAGATCTTGAGAAAGCAGAGGCACAGATTGGTGTTGAAGTTCACAGTGCCATCAACGCAGCTCTCTCGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_DE_N

Protein Analysis

203

Amino Acids

21.55

Weight (kDa)

6.2

Isoelectric Point (pI)

32.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 73 - 145 3e-16 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 270
AccII CGCG 1 cut(s) 449
AciI CCGC 6 cut(s) 42, 45, 155, 288, 449, 464
AcsI RAATTY 1 cut(s) 427
AflIII ACRYGT 1 cut(s) 322
AgsI TTSAA 2 cut(s) 81, 575
AjiI CACGTC 1 cut(s) 382
AjnI CCWGG 1 cut(s) 349
AleI CACNNNNGTG 1 cut(s) 380
AluBI AGCT 7 cut(s) 14, 217, 253, 343, 458, 506, 599
AluI AGCT 7 cut(s) 14, 217, 253, 343, 458, 506, 599
Alw26I GTCTC 1 cut(s) 26
Ama87I CYCGRG 1 cut(s) 604
ApeKI GCWGC 1 cut(s) 596
ApoI RAATTY 1 cut(s) 427
Asp700I GAANNNNTTC 1 cut(s) 392
AspS9I GGNCC 1 cut(s) 148
AsuC2I CCSGG 2 cut(s) 259, 318
AsuHPI GGTGA 2 cut(s) 73, 211
AvaI CYCGRG 1 cut(s) 604
AvaII GGWCC 1 cut(s) 148
BauI CACGAG 1 cut(s) 69
BbvI GCAGC 1 cut(s) 608
BccI CCATC 2 cut(s) 100, 596
BcgI CGANNNNNNTGC 1 cut(s) 585
BciT130I CCWGG 1 cut(s) 351
BcnI CCSGG 2 cut(s) 259, 318
BcoDI GTCTC 1 cut(s) 26
BfaI CTAG 1 cut(s) 483
BglII AGATCT 1 cut(s) 541
BisI GCNGC 4 cut(s) 42, 45, 464, 597
BlpI GCTNAGC 1 cut(s) 339
BlsI GCNGC 4 cut(s) 43, 46, 465, 598
Bme1390I CCNGG 3 cut(s) 259, 318, 351
Bme18I GGWCC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 604
BmgBI CACGTC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 148
BmiI GGNNCC 1 cut(s) 150
BmrFI CCNGG 3 cut(s) 259, 318, 351
BmsI GCATC 3 cut(s) 56, 299, 363
Bpu1102I GCTNAGC 1 cut(s) 339
BpuEI CTTGAG 2 cut(s) 418, 566
BpuMI CCSGG 2 cut(s) 259, 318
BseBI CCWGG 1 cut(s) 351
BseMII CTCAG 3 cut(s) 240, 330, 498
BseRI GAGGAG 1 cut(s) 14
BseXI GCAGC 1 cut(s) 608
Bsh1236I CGCG 1 cut(s) 449
BsiHKCI CYCGRG 1 cut(s) 604
BsiSI CCGG 2 cut(s) 258, 318
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsmI GAATGC 1 cut(s) 413
BsoBI CYCGRG 1 cut(s) 604
Bsp143I GATC 2 cut(s) 32, 541
Bsp1720I GCTNAGC 1 cut(s) 339
BspACI CCGC 6 cut(s) 42, 45, 155, 288, 449, 464
BspCNI CTCAG 3 cut(s) 241, 331, 499
BspFNI CGCG 1 cut(s) 449
BspHI TCATGA 1 cut(s) 174
BspLI GGNNCC 1 cut(s) 150
BssMI GATC 2 cut(s) 32, 541
BssSI CACGAG 1 cut(s) 69
Bst2BI CACGAG 1 cut(s) 69
Bst2UI CCWGG 1 cut(s) 351
Bst4CI ACNGT 2 cut(s) 223, 584
BstDEI CTNAG 3 cut(s) 249, 339, 507
BstFNI CGCG 1 cut(s) 449
BstKTI GATC 2 cut(s) 35, 544
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 2 cut(s) 32, 541
BstMWI GCNNNNNNNGC 2 cut(s) 455, 593
BstNI CCWGG 1 cut(s) 351
BstSCI CCNGG 3 cut(s) 257, 316, 349
BstUI CGCG 1 cut(s) 449
BstV1I GCAGC 1 cut(s) 608
BstX2I RGATCY 1 cut(s) 541
BstYI RGATCY 1 cut(s) 541
BtrI CACGTC 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 3 cut(s) 375, 409, 589
CciI TCATGA 1 cut(s) 174
Cfr13I GGNCC 1 cut(s) 148
CseI GACGC 1 cut(s) 106
CviAII CATG 5 cut(s) 123, 175, 274, 358, 368
CviJI RGCY 9 cut(s) 14, 217, 253, 343, 458, 486, 506, 599, 609
CviKI_1 RGCY 9 cut(s) 14, 217, 253, 343, 458, 486, 506, 599, 609
DdeI CTNAG 3 cut(s) 249, 339, 507
DpnI GATC 2 cut(s) 34, 543
DpnII GATC 2 cut(s) 32, 541
DraI TTTAAA 1 cut(s) 7
Eco47I GGWCC 1 cut(s) 148
Eco88I CYCGRG 1 cut(s) 604
EcoRII CCWGG 1 cut(s) 349
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 5 cut(s) 126, 178, 277, 361, 371
FaiI YATR 7 cut(s) 124, 146, 176, 275, 359, 369, 443
FalI AAGNNNNNCTT 2 cut(s) 377, 409
FatI CATG 5 cut(s) 122, 174, 273, 357, 367
FauI CCCGC 1 cut(s) 295
FblI GTMKAC 1 cut(s) 270
Fnu4HI GCNGC 4 cut(s) 42, 45, 464, 597
Fsp4HI GCNGC 4 cut(s) 42, 45, 464, 597
FspBI CTAG 1 cut(s) 483
GluI GCNGC 4 cut(s) 42, 45, 464, 597
HapII CCGG 2 cut(s) 258, 318
HgaI GACGC 1 cut(s) 106
Hin1II CATG 5 cut(s) 126, 178, 277, 361, 371
HincII GTYRAC 1 cut(s) 271
HindII GTYRAC 1 cut(s) 271
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 3 cut(s) 67, 104, 160
HpaII CCGG 2 cut(s) 258, 318
HphI GGTGA 2 cut(s) 73, 211
Hpy166II GTNNAC 2 cut(s) 271, 580
Hpy188I TCNGA 1 cut(s) 250
Hpy188III TCNNGA 5 cut(s) 30, 175, 208, 397, 545
Hpy8I GTNNAC 2 cut(s) 271, 580
Hpy99I CGWCG 4 cut(s) 100, 119, 214, 437
HpyAV CCTTC 4 cut(s) 174, 198, 207, 365
HpyCH4III ACNGT 2 cut(s) 223, 584
HpyCH4IV ACGT 2 cut(s) 324, 381
HpyCH4V TGCA 1 cut(s) 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 455, 593
HpyF3I CTNAG 3 cut(s) 249, 339, 507
HpySE526I ACGT 2 cut(s) 324, 381
Hsp92II CATG 5 cut(s) 126, 178, 277, 361, 371
Kzo9I GATC 2 cut(s) 32, 541
LpnPI CCDG 5 cut(s) 271, 282, 331, 336, 363
Lsp1109I GCAGC 1 cut(s) 608
LweI GCATC 3 cut(s) 56, 299, 363
MaeI CTAG 1 cut(s) 483
MaeII ACGT 2 cut(s) 324, 381
MaeIII GTNAC 1 cut(s) 61
MalI GATC 2 cut(s) 34, 543
MboI GATC 2 cut(s) 32, 541
MboII GAAGA 4 cut(s) 42, 139, 192, 397
MfeI CAATTG 1 cut(s) 333
MflI RGATCY 1 cut(s) 541
MluCI AATT 3 cut(s) 226, 333, 427
MlyI GAGTC 2 cut(s) 61, 154
MmeI TCCRAC 2 cut(s) 353, 538
MnlI CCTC 7 cut(s) 35, 112, 192, 245, 259, 428, 550
MroXI GAANNNNTTC 1 cut(s) 392
MseI TTAA 1 cut(s) 6
MslI CAYNNNNRTG 1 cut(s) 380
MspI CCGG 2 cut(s) 258, 318
MspR9I CCNGG 3 cut(s) 259, 318, 351
MssI GTTTAAAC 1 cut(s) 7
MunI CAATTG 1 cut(s) 333
Mva1269I GAATGC 1 cut(s) 413
MvaI CCWGG 1 cut(s) 351
MvnI CGCG 1 cut(s) 449
MwoI GCNNNNNNNGC 2 cut(s) 455, 593
NciI CCSGG 2 cut(s) 259, 318
NdeII GATC 2 cut(s) 32, 541
NlaIII CATG 5 cut(s) 126, 178, 277, 361, 371
NlaIV GGNNCC 1 cut(s) 150
NmuCI GTSAC 1 cut(s) 61
OliI CACNNNNGTG 1 cut(s) 380
PagI TCATGA 1 cut(s) 174
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 413
PdmI GAANNNNTTC 1 cut(s) 392
PfeI GAWTC 1 cut(s) 104
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 4 cut(s) 43, 46, 465, 598
PleI GAGTC 2 cut(s) 61, 154
PmeI GTTTAAAC 1 cut(s) 7
PpsI GAGTC 2 cut(s) 61, 154
Psp6I CCWGG 1 cut(s) 349
PspGI CCWGG 1 cut(s) 349
PspN4I GGNNCC 1 cut(s) 150
PspPI GGNCC 1 cut(s) 148
PsuI RGATCY 1 cut(s) 541
PsyI GACNNNGTC 1 cut(s) 275
RseI CAYNNNNRTG 1 cut(s) 380
SalI GTCGAC 1 cut(s) 269
SaqAI TTAA 1 cut(s) 6
SatI GCNGC 4 cut(s) 42, 45, 464, 597
Sau3AI GATC 2 cut(s) 32, 541
Sau96I GGNCC 1 cut(s) 148
SchI GAGTC 2 cut(s) 61, 154
ScrFI CCNGG 3 cut(s) 259, 318, 351
SfaNI GCATC 3 cut(s) 56, 299, 363
SinI GGWCC 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 380
SmlI CTYRAG 2 cut(s) 397, 545
SmoI CTYRAG 2 cut(s) 397, 545
Sse9I AATT 3 cut(s) 226, 333, 427
SsiI CCGC 6 cut(s) 42, 45, 155, 288, 449, 464
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 3 cut(s) 257, 316, 349
TaaI ACNGT 2 cut(s) 223, 584
TaiI ACGT 2 cut(s) 327, 384
TaqI TCGA 4 cut(s) 95, 102, 117, 270
TasI AATT 3 cut(s) 226, 333, 427
TauI GCSGC 3 cut(s) 44, 47, 466
TfiI GAWTC 1 cut(s) 104
Tru1I TTAA 1 cut(s) 6
Tru9I TTAA 1 cut(s) 6
TscAI CASTG 3 cut(s) 382, 409, 589
TseFI GTSAC 1 cut(s) 61
TseI GCWGC 1 cut(s) 596
Tsp45I GTSAC 1 cut(s) 61
TspDTI ATGAA 3 cut(s) 163, 191, 384
TspGWI ACGGA 3 cut(s) 98, 352, 421
TspRI CASTG 3 cut(s) 382, 409, 589
Tth111I GACNNNGTC 1 cut(s) 275
VpaK11BI GGWCC 1 cut(s) 148
XapI RAATTY 1 cut(s) 427
XmiI GTMKAC 1 cut(s) 270
XmnI GAANNNNTTC 1 cut(s) 392
XspI CTAG 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.