pycom07g07610

ATP synthase subunit delta'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0003919
Physical Location & Seq
Forward (+)
6896103 .. 6896420
318 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g07610.1

Sequence Viewer

Length: 318 bp
ATGGGTGTTCTTCCTGGACATGTAGCAACAATTGCCGAGTTGAAACCCGGGGTCATGTCAGTACATGAAGGAGCTGATGTCACAAAATATTTCGTCAGCAGTGGTTTTGCATTCATCCACGCGAACTCTATTGCAGACGTAATTGCTGTAGAGGCTGTCCCTCTTGATCGTGTCGATGCAAGTCTTGTCCAGAAGGGTCTTGCAGAGTTCACCCAGAAGCTCAACTCAGCGTCGACTGACTTGGAGAAAGCTGAAGCCCAGATTGGAGTTGATGTGCATAGTGCCCTAAACTCTGCTCTCACCGGCAAGTTTTACTAG

Protein Analysis

106

Amino Acids

10.98

Weight (kDa)

5.13

Isoelectric Point (pI)

11.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 1 - 44 2.6e-08 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 233
AccII CGCG 1 cut(s) 122
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 63
AflIII ACRYGT 1 cut(s) 19
AgsI TTSAA 1 cut(s) 43
AjnI CCWGG 1 cut(s) 13
AjuI GAANNNNNNNTTGG 2 cut(s) 246, 278
AluBI AGCT 3 cut(s) 74, 220, 251
AluI AGCT 3 cut(s) 74, 220, 251
Ama87I CYCGRG 1 cut(s) 47
AsuC2I CCSGG 2 cut(s) 48, 49
AsuHPI GGTGA 2 cut(s) 202, 292
AvaI CYCGRG 1 cut(s) 47
BaeGI GKGCMC 1 cut(s) 286
BciT130I CCWGG 1 cut(s) 15
BcnI CCSGG 2 cut(s) 48, 49
BfaI CTAG 1 cut(s) 316
BfmI CTRYAG 1 cut(s) 147
Bme1390I CCNGG 3 cut(s) 15, 48, 49
BmeT110I CYCGRG 1 cut(s) 47
BmrFI CCNGG 3 cut(s) 15, 48, 49
BmsI GCATC 1 cut(s) 166
BpuMI CCSGG 2 cut(s) 48, 49
BsaJI CCNNGG 2 cut(s) 47, 48
BsaXI ACNNNNNCTCC 4 cut(s) 63, 93, 258, 288
Bse118I RCCGGY 1 cut(s) 302
BseBI CCWGG 1 cut(s) 15
BseDI CCNNGG 2 cut(s) 47, 48
BseGI GGATG 1 cut(s) 114
BseMII CTCAG 1 cut(s) 240
BseSI GKGCMC 1 cut(s) 286
Bsh1236I CGCG 1 cut(s) 122
BsiHKCI CYCGRG 1 cut(s) 47
BsiSI CCGG 2 cut(s) 48, 303
BslFI GGGAC 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 143
BsmI GAATGC 1 cut(s) 110
BsoBI CYCGRG 1 cut(s) 47
Bsp1286I GDGCHC 1 cut(s) 286
Bsp143I GATC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 239
BspFNI CGCG 1 cut(s) 122
BsrFI RCCGGY 1 cut(s) 302
BssAI RCCGGY 1 cut(s) 302
BssECI CCNNGG 2 cut(s) 47, 48
BssMI GATC 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 15
BstAPI GCANNNNNTGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 226
BstF5I GGATG 1 cut(s) 114
BstFNI CGCG 1 cut(s) 122
BstKTI GATC 1 cut(s) 169
BstMBI GATC 1 cut(s) 166
BstMWI GCNNNNNNNGC 2 cut(s) 32, 152
BstNI CCWGG 1 cut(s) 15
BstNSI RCATGY 1 cut(s) 23
BstSCI CCNGG 3 cut(s) 13, 46, 47
BstSFI CTRYAG 1 cut(s) 147
BstSLI GKGCMC 1 cut(s) 286
BstUI CGCG 1 cut(s) 122
BtsCI GGATG 1 cut(s) 114
BtsI GCAGTG 1 cut(s) 106
BtsIMutI CAGTG 1 cut(s) 106
Cfr10I RCCGGY 1 cut(s) 302
Cfr9I CCCGGG 1 cut(s) 47
CseI GACGC 1 cut(s) 219
Csp6I GTAC 1 cut(s) 62
CviAII CATG 3 cut(s) 20, 55, 65
CviJI RGCY 5 cut(s) 74, 155, 220, 251, 257
CviKI_1 RGCY 5 cut(s) 74, 155, 220, 251, 257
CviQI GTAC 1 cut(s) 62
DdeI CTNAG 1 cut(s) 226
DpnI GATC 1 cut(s) 168
DpnII GATC 1 cut(s) 166
Eco57I CTGAAG 1 cut(s) 273
Eco88I CYCGRG 1 cut(s) 47
EcoRII CCWGG 1 cut(s) 13
FaeI CATG 3 cut(s) 23, 58, 68
FaiI YATR 4 cut(s) 21, 56, 66, 279
FaqI GGGAC 1 cut(s) 143
FatI CATG 3 cut(s) 19, 54, 64
FblI GTMKAC 1 cut(s) 233
FokI GGATG 1 cut(s) 101
FspBI CTAG 1 cut(s) 316
HapII CCGG 2 cut(s) 48, 303
HgaI GACGC 1 cut(s) 219
Hin1II CATG 3 cut(s) 23, 58, 68
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HpaII CCGG 2 cut(s) 48, 303
HphI GGTGA 2 cut(s) 202, 292
Hpy166II GTNNAC 2 cut(s) 210, 234
Hpy188III TCNNGA 2 cut(s) 164, 190
Hpy8I GTNNAC 2 cut(s) 210, 234
Hpy99I CGWCG 1 cut(s) 235
HpyAV CCTTC 2 cut(s) 62, 187
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 5 cut(s) 110, 134, 179, 203, 277
HpyF10VI GCNNNNNNNGC 2 cut(s) 32, 152
HpyF3I CTNAG 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 138
Hsp92II CATG 3 cut(s) 23, 58, 68
Kzo9I GATC 1 cut(s) 166
LmnI GCTCC 1 cut(s) 71
LpnPI CCDG 5 cut(s) 27, 61, 203, 227, 272
LweI GCATC 1 cut(s) 166
MaeI CTAG 1 cut(s) 316
MaeII ACGT 1 cut(s) 138
MaeIII GTNAC 1 cut(s) 79
MalI GATC 1 cut(s) 168
MboI GATC 1 cut(s) 166
MfeI CAATTG 1 cut(s) 30
MhlI GDGCHC 1 cut(s) 286
MluCI AATT 2 cut(s) 30, 141
MnlI CCTC 2 cut(s) 145, 171
MspI CCGG 2 cut(s) 48, 303
MspR9I CCNGG 3 cut(s) 15, 48, 49
MunI CAATTG 1 cut(s) 30
Mva1269I GAATGC 1 cut(s) 110
MvaI CCWGG 1 cut(s) 15
MvnI CGCG 1 cut(s) 122
MwoI GCNNNNNNNGC 2 cut(s) 32, 152
NciI CCSGG 2 cut(s) 48, 49
NdeII GATC 1 cut(s) 166
NlaIII CATG 3 cut(s) 23, 58, 68
NmeAIII GCCGAG 1 cut(s) 61
NmuCI GTSAC 1 cut(s) 79
NspI RCATGY 1 cut(s) 23
PciI ACATGT 1 cut(s) 19
PctI GAATGC 1 cut(s) 110
PfoI TCCNGGA 1 cut(s) 13
PscI ACATGT 1 cut(s) 19
Psp6I CCWGG 1 cut(s) 13
PspGI CCWGG 1 cut(s) 13
RsaI GTAC 1 cut(s) 63
RsaNI GTAC 1 cut(s) 62
SalI GTCGAC 1 cut(s) 232
Sau3AI GATC 1 cut(s) 166
ScrFI CCNGG 3 cut(s) 15, 48, 49
SduI GDGCHC 1 cut(s) 286
SetI ASST 4 cut(s) 76, 141, 222, 253
SfaNI GCATC 1 cut(s) 166
SfcI CTRYAG 1 cut(s) 147
SmaI CCCGGG 1 cut(s) 49
Sse9I AATT 2 cut(s) 30, 141
SspI AATATT 1 cut(s) 89
SspMI CTAG 1 cut(s) 316
StyD4I CCNGG 3 cut(s) 13, 46, 47
TaiI ACGT 1 cut(s) 141
TaqI TCGA 2 cut(s) 174, 233
TasI AATT 2 cut(s) 30, 141
TatI WGTACW 1 cut(s) 61
TscAI CASTG 1 cut(s) 106
TseFI GTSAC 1 cut(s) 79
Tsp45I GTSAC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 81, 103
TspMI CCCGGG 1 cut(s) 47
TspRI CASTG 1 cut(s) 106
XceI RCATGY 1 cut(s) 23
XmaI CCCGGG 1 cut(s) 47
XmiI GTMKAC 1 cut(s) 233
XspI CTAG 1 cut(s) 316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.