Prupe.5G049800_v2.0.a1

ATP synthase subunit delta'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0003919
Physical Location & Seq
Forward (+)
5272891 .. 5274949
2059 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G049800.1

Sequence Viewer

Length: 612 bp
ATGTTCATGTTTCGTCAAGCCTCAAGCCTCTTGGGTCGACCCGCTTGCCCGAGCAGGTTCCGAGCCTTGTGCACAGAGGTCCCGGCGGCCAATCCCAACGCCGACTCAGCCTTCATCGAGTCATGGAAGAAAGTGATACCAATCATGGACCCACCCAAAACTCCATCAACCTATATGGAGCCCCGCCCTCCCACACCTTCTTCTCTCCCTTCCAAACTCACCGTCAACTTTGTCCTCCCCTACTCCTCTGAGCTCTCTGGCAAAGAGGTTGACATGGTTATGGTACCAGCAACAACTGGACAAATGGGTGTCTTGCCTGGCCATGTAGCAACAATCGCAGAGCTTAAGCCCGGTATCCTCTCGGTGCACGAAGGGAGCGAAGTGACCAAGTATTTTGTGAGCAGTGGGTTTGCTTTTATTCATGCAAATTCTGTTGCTGATATAGTCGCTGTGGAGGCTGTTCCAATTGACCAGATTGATGCAAGCTTAGTGCAAAAGGGACTTGCAGAGTTCACCCAGAAGCTCAGTTCAGCCACAACCGATTTGGAGAAAGCTGAAGCACAGATTGGGGTTGATGTTCATAGTGCTCTCAACTCTGCTCTCACTGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_DE_N

Protein Analysis

204

Amino Acids

21.56

Weight (kDa)

5.34

Isoelectric Point (pI)

39.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 45
Acc65I GGTACC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 37
AciI CCGC 3 cut(s) 42, 86, 184
AcoI YGGCCR 2 cut(s) 87, 319
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 576
AfaI GTAC 1 cut(s) 285
AflII CTTAAG 1 cut(s) 344
AjnI CCWGG 1 cut(s) 316
AjuI GAANNNNNNNTTGG 2 cut(s) 549, 581
AluBI AGCT 5 cut(s) 253, 343, 486, 523, 554
AluI AGCT 5 cut(s) 253, 343, 486, 523, 554
Alw21I GWGCWC 4 cut(s) 74, 255, 369, 589
Alw44I GTGCAC 2 cut(s) 70, 365
Ama87I CYCGRG 1 cut(s) 49
AoxI GGCC 2 cut(s) 87, 319
ApaLI GTGCAC 2 cut(s) 70, 365
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 207, 239
Asp718I GGTACC 1 cut(s) 283
AspS9I GGNCC 2 cut(s) 79, 148
AsuC2I CCSGG 2 cut(s) 83, 351
AsuHPI GGTGA 2 cut(s) 211, 505
AvaI CYCGRG 1 cut(s) 49
AvaII GGWCC 2 cut(s) 79, 148
BaeGI GKGCMC 2 cut(s) 74, 369
BalI TGGCCA 1 cut(s) 321
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 2 cut(s) 183, 255
Bbv12I GWGCWC 4 cut(s) 74, 255, 369, 589
BccI CCATC 1 cut(s) 172
BcgI CGANNNNNNTGC 4 cut(s) 27, 51, 61, 85
BciT130I CCWGG 1 cut(s) 318
BciVI GTATCC 1 cut(s) 365
BcnI CCSGG 2 cut(s) 83, 351
BfrI CTTAAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 45
BfuI GTATCC 1 cut(s) 365
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 3 cut(s) 83, 318, 351
Bme18I GGWCC 2 cut(s) 79, 148
BmeT110I CYCGRG 1 cut(s) 49
BmgT120I GGNCC 2 cut(s) 79, 148
BmiI GGNNCC 5 cut(s) 59, 81, 150, 180, 285
BmrFI CCNGG 3 cut(s) 83, 318, 351
BmsI GCATC 1 cut(s) 469
BpuEI CTTGAG 1 cut(s) 7
BpuMI CCSGG 2 cut(s) 83, 351
BsaBI GATNNNNATC 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 301, 610
Bse8I GATNNNNATC 1 cut(s) 140
BseBI CCWGG 1 cut(s) 318
BseJI GATNNNNATC 1 cut(s) 140
BseMII CTCAG 3 cut(s) 120, 240, 538
BseNI ACTGG 2 cut(s) 301, 610
BseRI GAGGAG 1 cut(s) 235
BseSI GKGCMC 2 cut(s) 74, 369
BshFI GGCC 2 cut(s) 89, 321
BshNI GGYRCC 1 cut(s) 283
BsiHKAI GWGCWC 4 cut(s) 74, 255, 369, 589
BsiHKCI CYCGRG 1 cut(s) 49
BsiSI CCGG 2 cut(s) 83, 351
BslFI GGGAC 2 cut(s) 65, 513
BsmFI GGGAC 2 cut(s) 65, 513
BsnI GGCC 2 cut(s) 89, 321
BsoBI CYCGRG 1 cut(s) 49
Bsp1286I GDGCHC 5 cut(s) 74, 183, 255, 369, 589
BspACI CCGC 3 cut(s) 42, 86, 184
BspANI GGCC 2 cut(s) 89, 321
BspCNI CTCAG 3 cut(s) 119, 241, 537
BspLI GGNNCC 5 cut(s) 59, 81, 150, 180, 285
BspMI ACCTGC 1 cut(s) 45
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 344
BsrI ACTGG 2 cut(s) 301, 610
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 1 cut(s) 223
BstAFI CTTAAG 1 cut(s) 344
BstC8I GCNNGC 2 cut(s) 46, 484
BstDEI CTNAG 4 cut(s) 106, 249, 487, 524
BstMWI GCNNNNNNNGC 3 cut(s) 107, 335, 455
BstNI CCWGG 1 cut(s) 318
BstSCI CCNGG 3 cut(s) 81, 316, 349
BstSLI GKGCMC 2 cut(s) 74, 369
BsuI GTATCC 1 cut(s) 365
BsuRI GGCC 2 cut(s) 89, 321
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 2 cut(s) 409, 603
BveI ACCTGC 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 46, 484
Cfr13I GGNCC 2 cut(s) 79, 148
Csp6I GTAC 1 cut(s) 284
CviAII CATG 6 cut(s) 7, 123, 145, 274, 323, 422
CviQI GTAC 1 cut(s) 284
DdeI CTNAG 4 cut(s) 106, 249, 487, 524
EaeI YGGCCR 2 cut(s) 87, 319
Ecl136II GAGCTC 1 cut(s) 253
Eco24I GRGCYC 2 cut(s) 183, 255
Eco47I GGWCC 2 cut(s) 79, 148
Eco53kI GAGCTC 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 576
Eco88I CYCGRG 1 cut(s) 49
EcoICRI GAGCTC 1 cut(s) 253
EcoO109I RGGNCCY 1 cut(s) 79
EcoRII CCWGG 1 cut(s) 316
EcoT38I GRGCYC 2 cut(s) 183, 255
FaeI CATG 6 cut(s) 10, 126, 148, 277, 326, 425
FaqI GGGAC 2 cut(s) 65, 513
FatI CATG 6 cut(s) 6, 122, 144, 273, 322, 421
FauI CCCGC 2 cut(s) 49, 191
FblI GTMKAC 1 cut(s) 37
Fnu4HI GCNGC 1 cut(s) 87
FriOI GRGCYC 2 cut(s) 183, 255
Fsp4HI GCNGC 1 cut(s) 87
GluI GCNGC 1 cut(s) 87
HaeIII GGCC 2 cut(s) 89, 321
HapII CCGG 2 cut(s) 83, 351
Hin1II CATG 6 cut(s) 10, 126, 148, 277, 326, 425
HincII GTYRAC 3 cut(s) 38, 226, 271
HindII GTYRAC 3 cut(s) 38, 226, 271
HindIII AAGCTT 1 cut(s) 484
HinfI GANTC 2 cut(s) 104, 119
HpaII CCGG 2 cut(s) 83, 351
HphI GGTGA 2 cut(s) 211, 505
Hpy166II GTNNAC 6 cut(s) 38, 72, 226, 271, 367, 513
Hpy188I TCNGA 2 cut(s) 62, 250
Hpy8I GTNNAC 6 cut(s) 38, 72, 226, 271, 367, 513
HpyAV CCTTC 4 cut(s) 121, 207, 219, 365
HpyCH4III ACNGT 1 cut(s) 223
HpyCH4V TGCA 6 cut(s) 72, 367, 425, 482, 493, 506
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 335, 455
HpyF3I CTNAG 4 cut(s) 106, 249, 487, 524
Hsp92II CATG 6 cut(s) 10, 126, 148, 277, 326, 425
KpnI GGTACC 1 cut(s) 287
LmnI GCTCC 2 cut(s) 178, 375
LweI GCATC 1 cut(s) 469
MaeIII GTNAC 1 cut(s) 382
MboII GAAGA 2 cut(s) 139, 192
MfeI CAATTG 1 cut(s) 465
MhlI GDGCHC 5 cut(s) 74, 183, 255, 369, 589
MlsI TGGCCA 1 cut(s) 321
MluCI AATT 2 cut(s) 427, 465
MluNI TGGCCA 1 cut(s) 321
MlyI GAGTC 2 cut(s) 98, 128
MnlI CCTC 9 cut(s) 31, 38, 70, 198, 245, 256, 259, 368, 448
Mox20I TGGCCA 1 cut(s) 321
MscI TGGCCA 1 cut(s) 321
MseI TTAA 1 cut(s) 345
MslI CAYNNNNRTG 1 cut(s) 278
Msp20I TGGCCA 1 cut(s) 321
MspCI CTTAAG 1 cut(s) 344
MspI CCGG 2 cut(s) 83, 351
MspR9I CCNGG 3 cut(s) 83, 318, 351
MunI CAATTG 1 cut(s) 465
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 3 cut(s) 107, 335, 455
NciI CCSGG 2 cut(s) 83, 351
NlaIII CATG 6 cut(s) 10, 126, 148, 277, 326, 425
NlaIV GGNNCC 5 cut(s) 59, 81, 150, 180, 285
NmuCI GTSAC 1 cut(s) 382
PcsI WCGNNNNNNNCGW 1 cut(s) 375
PkrI GCNGC 1 cut(s) 88
PleI GAGTC 2 cut(s) 98, 127
PpsI GAGTC 2 cut(s) 98, 127
PpuMI RGGWCCY 1 cut(s) 79
Psp124BI GAGCTC 1 cut(s) 255
Psp5II RGGWCCY 1 cut(s) 79
Psp6I CCWGG 1 cut(s) 316
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 5 cut(s) 59, 81, 150, 180, 285
PspPI GGNCC 2 cut(s) 79, 148
PspPPI RGGWCCY 1 cut(s) 79
RsaI GTAC 1 cut(s) 285
RsaNI GTAC 1 cut(s) 284
RseI CAYNNNNRTG 1 cut(s) 278
SacI GAGCTC 1 cut(s) 255
SalI GTCGAC 1 cut(s) 36
SaqAI TTAA 1 cut(s) 345
SatI GCNGC 1 cut(s) 87
Sau96I GGNCC 2 cut(s) 79, 148
SchI GAGTC 2 cut(s) 98, 128
ScrFI CCNGG 3 cut(s) 83, 318, 351
SduI GDGCHC 5 cut(s) 74, 183, 255, 369, 589
SfaNI GCATC 1 cut(s) 469
SinI GGWCC 2 cut(s) 79, 148
SmiMI CAYNNNNRTG 1 cut(s) 278
SmlI CTYRAG 2 cut(s) 22, 344
SmoI CTYRAG 2 cut(s) 22, 344
Sse9I AATT 2 cut(s) 427, 465
SsiI CCGC 3 cut(s) 42, 86, 184
SstI GAGCTC 1 cut(s) 255
StyD4I CCNGG 3 cut(s) 81, 316, 349
TaaI ACNGT 1 cut(s) 223
TaqI TCGA 2 cut(s) 37, 117
TasI AATT 2 cut(s) 427, 465
TauI GCSGC 1 cut(s) 89
Tru1I TTAA 1 cut(s) 345
Tru9I TTAA 1 cut(s) 345
TscAI CASTG 2 cut(s) 409, 610
TseFI GTSAC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 382
TspDTI ATGAA 3 cut(s) 103, 410, 569
TspRI CASTG 2 cut(s) 409, 610
Vha464I CTTAAG 1 cut(s) 344
VneI GTGCAC 2 cut(s) 70, 365
VpaK11BI GGWCC 2 cut(s) 79, 148
XapI RAATTY 1 cut(s) 427
XcmI CCANNNNNNNNNTGG 1 cut(s) 541
XmiI GTMKAC 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.