Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

37620335 .. 37624227

Gene Structure 3893 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG187700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGCTGCGCCGCGCCACCGCTCTCTTGACCCGACCCGCATCCGCACTCCGGGCCGCCCGAGCCTTCTCCACCGATGTCGCCGAAGCTCCCGTAGGCAACCCCGCTTTCAACGAGGCCTGGAAGAAGGTCATCCCTCACATCGAGCCCCCCAAGACTCCTCTGTCCTTCATGAAGCCCCGCCCCCCCACCCCGTCCTCGATCCCCACTAAGCTCACCGTCAACTTCGTGCTGCCGTACGCATCTGAGCTCTCCGCCAAAGAGGTGGACATGGTCATAATTCCGGCAAGCACTGGGCAGATGGGTGTTCTTCCGGGACATGTGGCAACAATTGCAGAGTTGAAACCTGGGGTCCTATCAGTACATGAAGGAAATGATGTGACAAAGTACTTCGTCAGCAGTGGTTTTGCATTCATCCATGCGAACTCTTACGCAGATATAATTGCTGTTGAGGCTGTCCCTATCGATCGAGTTGATCCAAGTCTTGTCCAGAAAGGGCTTGCAGAGTTCACTCAGAAGCTAAACTCAGCCTCAACTGACCTGGAGAAAGCTGAAGCCCAGATTGGAGTTGACGTGCATAGTGCCCTCAATGCTGCTCTCACAGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

201

Amino Acids

21.31

Weight (kDa)

6.52

Isoelectric Point (pI)

28.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_DE_N	PF02823	71 - 142	5e-16	ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	12
AciI	CCGC	8 cut(s)	10, 18, 36, 42, 54, 102, 178, 252
AclWI	GGATC	2 cut(s)	193, 467
AcuI	CTGAAG	1 cut(s)	570
AfaI	GTAC	3 cut(s)	236, 360, 386
AfiI	CCNNNNNNNGG	1 cut(s)	48
AflIII	ACRYGT	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	109, 340
AjiI	CACGTC	1 cut(s)	571
AjnI	CCWGG	3 cut(s)	116, 343, 537
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	86, 211, 247, 517, 548
AluI	AGCT	5 cut(s)	86, 211, 247, 517, 548
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	193, 467
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	2 cut(s)	51, 114
ApeKI	GCWGC	3 cut(s)	4, 229, 590
AspLEI	GCGC	2 cut(s)	9, 14
AspS9I	GGNCC	2 cut(s)	51, 349
AsuC2I	CCSGG	2 cut(s)	50, 312
AsuHPI	GGTGA	1 cut(s)	205
AvaI	CYCGRG	1 cut(s)	57
AvaII	GGWCC	1 cut(s)	349
BaeGI	GKGCMC	1 cut(s)	583
BanII	GRGCYC	2 cut(s)	147, 249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	2 cut(s)	216, 577
BccI	CCATC	1 cut(s)	292
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	3 cut(s)	118, 345, 539
BcnI	CCSGG	2 cut(s)	50, 312
BfaI	CTAG	1 cut(s)	604
BisI	GCNGC	5 cut(s)	5, 10, 54, 230, 591
BlsI	GCNGC	5 cut(s)	6, 11, 55, 231, 592
BmcAI	AGTACT	1 cut(s)	386
Bme1390I	CCNGG	5 cut(s)	50, 118, 312, 345, 539
Bme18I	GGWCC	1 cut(s)	349
BmeT110I	CYCGRG	1 cut(s)	57
BmgBI	CACGTC	1 cut(s)	571
BmgT120I	GGNCC	2 cut(s)	51, 349
BmiI	GGNNCC	1 cut(s)	350
BmrFI	CCNGG	5 cut(s)	50, 118, 312, 345, 539
BmrI	ACTGGG	1 cut(s)	300
BmsI	GCATC	2 cut(s)	47, 248
BmuI	ACTGGG	1 cut(s)	300
BpmI	CTGGAG	1 cut(s)	560
BpuMI	CCSGG	2 cut(s)	50, 312
Bsa29I	ATCGAT	1 cut(s)	462
BsaJI	CCNNGG	1 cut(s)	344
BsaXI	ACNNNNNCTCC	2 cut(s)	555, 585
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	295
BseBI	CCWGG	3 cut(s)	118, 345, 539
BseCI	ATCGAT	1 cut(s)	462
BseDI	CCNNGG	1 cut(s)	344
BseGI	GGATG	3 cut(s)	38, 129, 411
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseMII	CTCAG	3 cut(s)	234, 524, 537
BseNI	ACTGG	1 cut(s)	295
BseRI	GAGGAG	1 cut(s)	147
BseSI	GKGCMC	1 cut(s)	583
BseXI	GCAGC	2 cut(s)	216, 577
Bsh1236I	CGCG	1 cut(s)	12
Bsh1285I	CGRYCG	1 cut(s)	466
BshFI	GGCC	2 cut(s)	53, 116
BshVI	ATCGAT	1 cut(s)	462
BsiEI	CGRYCG	1 cut(s)	466
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	3 cut(s)	49, 281, 311
BsiWI	CGTACG	1 cut(s)	234
BslFI	GGGAC	2 cut(s)	327, 440
BslI	CCNNNNNNNGG	1 cut(s)	48
BsmFI	GGGAC	2 cut(s)	327, 440
BsmI	GAATGC	1 cut(s)	407
BsnI	GGCC	2 cut(s)	53, 116
BsoBI	CYCGRG	1 cut(s)	57
Bsp1286I	GDGCHC	3 cut(s)	147, 249, 583
Bsp143I	GATC	3 cut(s)	198, 463, 472
BspACI	CCGC	8 cut(s)	10, 18, 36, 42, 54, 102, 178, 252
BspANI	GGCC	2 cut(s)	53, 116
BspCNI	CTCAG	3 cut(s)	235, 523, 536
BspDI	ATCGAT	1 cut(s)	462
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	193, 467
BsrBI	CCGCTC	1 cut(s)	20
BsrI	ACTGG	1 cut(s)	295
BssECI	CCNNGG	1 cut(s)	344
BssMI	GATC	3 cut(s)	198, 463, 472
Bst2UI	CCWGG	3 cut(s)	118, 345, 539
Bst4CI	ACNGT	1 cut(s)	217
BstAPI	GCANNNNNTGC	1 cut(s)	329
BstC8I	GCNNGC	2 cut(s)	286, 498
BstDEI	CTNAG	4 cut(s)	207, 243, 510, 523
BstF5I	GGATG	3 cut(s)	38, 129, 411
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	9, 14
BstKTI	GATC	3 cut(s)	201, 466, 475
BstMBI	GATC	3 cut(s)	198, 463, 472
BstMCI	CGRYCG	1 cut(s)	466
BstMWI	GCNNNNNNNGC	5 cut(s)	50, 59, 329, 449, 587
BstNI	CCWGG	3 cut(s)	118, 345, 539
BstNSI	RCATGY	1 cut(s)	320
BstSCI	CCNGG	5 cut(s)	48, 116, 310, 343, 537
BstSLI	GKGCMC	1 cut(s)	583
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	216, 577
BstXI	CCANNNNNNTGG	1 cut(s)	262
Bsu15I	ATCGAT	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	53, 116
BsuTUI	ATCGAT	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	571
BtsCI	GGATG	3 cut(s)	38, 129, 411
BtsI	GCAGTG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	288, 403
Cac8I	GCNNGC	2 cut(s)	286, 498
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	9, 14
Cfr13I	GGNCC	2 cut(s)	51, 349
ClaI	ATCGAT	1 cut(s)	462
Csp6I	GTAC	3 cut(s)	235, 359, 385
CviAII	CATG	5 cut(s)	169, 268, 317, 362, 416
CviQI	GTAC	3 cut(s)	235, 359, 385
DdeI	CTNAG	4 cut(s)	207, 243, 510, 523
DpnI	GATC	3 cut(s)	200, 465, 474
DpnII	GATC	3 cut(s)	198, 463, 472
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EciI	GGCGGA	1 cut(s)	241
Ecl136II	GAGCTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	147, 249
Eco47I	GGWCC	1 cut(s)	349
Eco53kI	GAGCTC	1 cut(s)	247
Eco57I	CTGAAG	1 cut(s)	570
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	247
EcoO109I	RGGNCCY	1 cut(s)	349
EcoRII	CCWGG	3 cut(s)	116, 343, 537
EcoT38I	GRGCYC	2 cut(s)	147, 249
FaeI	CATG	5 cut(s)	172, 271, 320, 365, 419
FaiI	YATR	8 cut(s)	170, 269, 275, 318, 363, 417, 437, 576
FaqI	GGGAC	2 cut(s)	327, 440
FatI	CATG	5 cut(s)	168, 267, 316, 361, 415
FauI	CCCGC	3 cut(s)	43, 109, 185
Fnu4HI	GCNGC	5 cut(s)	5, 10, 54, 230, 591
FokI	GGATG	3 cut(s)	25, 116, 398
FriOI	GRGCYC	2 cut(s)	147, 249
Fsp4HI	GCNGC	5 cut(s)	5, 10, 54, 230, 591
FspBI	CTAG	1 cut(s)	604
GlaI	GCGC	2 cut(s)	8, 13
GluI	GCNGC	5 cut(s)	5, 10, 54, 230, 591
GsuI	CTGGAG	1 cut(s)	560
HaeIII	GGCC	2 cut(s)	53, 116
HapII	CCGG	3 cut(s)	49, 281, 311
HhaI	GCGC	2 cut(s)	9, 14
Hin1II	CATG	5 cut(s)	172, 271, 320, 365, 419
Hin6I	GCGC	2 cut(s)	7, 12
HinP1I	GCGC	2 cut(s)	7, 12
HincII	GTYRAC	2 cut(s)	220, 568
HindII	GTYRAC	2 cut(s)	220, 568
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	3 cut(s)	49, 281, 311
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	4 cut(s)	220, 265, 507, 568
Hpy188I	TCNGA	2 cut(s)	244, 513
Hpy188III	TCNNGA	3 cut(s)	25, 169, 487
Hpy8I	GTNNAC	4 cut(s)	220, 265, 507, 568
HpyAV	CCTTC	4 cut(s)	73, 118, 175, 359
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	570
HpyCH4V	TGCA	4 cut(s)	332, 407, 500, 574
HpyF10VI	GCNNNNNNNGC	5 cut(s)	50, 59, 329, 449, 587
HpyF3I	CTNAG	4 cut(s)	207, 243, 510, 523
HpySE526I	ACGT	1 cut(s)	570
Hsp92II	CATG	5 cut(s)	172, 271, 320, 365, 419
HspAI	GCGC	2 cut(s)	7, 12
Kzo9I	GATC	3 cut(s)	198, 463, 472
LmnI	GCTCC	1 cut(s)	91
Lsp1109I	GCAGC	2 cut(s)	216, 577
LweI	GCATC	2 cut(s)	47, 248
MaeI	CTAG	1 cut(s)	604
MaeII	ACGT	1 cut(s)	570
MaeIII	GTNAC	1 cut(s)	376
MalI	GATC	3 cut(s)	200, 465, 474
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	3 cut(s)	198, 463, 472
MboII	GAAGA	2 cut(s)	133, 299
MfeI	CAATTG	1 cut(s)	327
MhlI	GDGCHC	3 cut(s)	147, 249, 583
MluCI	AATT	3 cut(s)	276, 327, 438
MlyI	GAGTC	1 cut(s)	148
MnlI	CCTC	8 cut(s)	106, 144, 168, 205, 253, 442, 538, 593
MspI	CCGG	3 cut(s)	49, 281, 311
MspR9I	CCNGG	5 cut(s)	50, 118, 312, 345, 539
MteI	GCGCNGCGC	1 cut(s)	10
MunI	CAATTG	1 cut(s)	327
Mva1269I	GAATGC	1 cut(s)	407
MvaI	CCWGG	3 cut(s)	118, 345, 539
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	5 cut(s)	50, 59, 329, 449, 587
NciI	CCSGG	2 cut(s)	50, 312
NdeII	GATC	3 cut(s)	198, 463, 472
NlaIII	CATG	5 cut(s)	172, 271, 320, 365, 419
NlaIV	GGNNCC	1 cut(s)	350
NmuCI	GTSAC	1 cut(s)	376
NspI	RCATGY	1 cut(s)	320
PagI	TCATGA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	116
PciI	ACATGT	1 cut(s)	316
PctI	GAATGC	1 cut(s)	407
Pfl23II	CGTACG	1 cut(s)	234
PflFI	GACNNNGTC	1 cut(s)	269
PfoI	TCCNGGA	1 cut(s)	310
PkrI	GCNGC	5 cut(s)	6, 11, 55, 231, 592
Ple19I	CGATCG	1 cut(s)	466
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PpuMI	RGGWCCY	1 cut(s)	349
PscI	ACATGT	1 cut(s)	316
Psp124BI	GAGCTC	1 cut(s)	249
Psp5II	RGGWCCY	1 cut(s)	349
Psp6I	CCWGG	3 cut(s)	116, 343, 537
PspGI	CCWGG	3 cut(s)	116, 343, 537
PspLI	CGTACG	1 cut(s)	234
PspN4I	GGNNCC	1 cut(s)	350
PspPI	GGNCC	2 cut(s)	51, 349
PspPPI	RGGWCCY	1 cut(s)	349
PsyI	GACNNNGTC	1 cut(s)	269
PvuI	CGATCG	1 cut(s)	466
RsaI	GTAC	3 cut(s)	236, 360, 386
RsaNI	GTAC	3 cut(s)	235, 359, 385
SacI	GAGCTC	1 cut(s)	249
SatI	GCNGC	5 cut(s)	5, 10, 54, 230, 591
Sau3AI	GATC	3 cut(s)	198, 463, 472
Sau96I	GGNCC	2 cut(s)	51, 349
ScaI	AGTACT	1 cut(s)	386
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	5 cut(s)	50, 118, 312, 345, 539
SduI	GDGCHC	3 cut(s)	147, 249, 583
SfaNI	GCATC	2 cut(s)	47, 248
SinI	GGWCC	1 cut(s)	349
Sse9I	AATT	3 cut(s)	276, 327, 438
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	8 cut(s)	10, 18, 36, 42, 54, 102, 178, 252
SspMI	CTAG	1 cut(s)	604
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	5 cut(s)	48, 116, 310, 343, 537
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	573
TaqI	TCGA	4 cut(s)	141, 197, 462, 466
TasI	AATT	3 cut(s)	276, 327, 438
TatI	WGTACW	2 cut(s)	358, 384
TauI	GCSGC	2 cut(s)	12, 56
TscAI	CASTG	2 cut(s)	295, 403
TseFI	GTSAC	1 cut(s)	376
TseI	GCWGC	3 cut(s)	4, 229, 590
Tsp45I	GTSAC	1 cut(s)	376
TspDTI	ATGAA	4 cut(s)	157, 185, 378, 400
TspRI	CASTG	2 cut(s)	295, 403
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	349
XceI	RCATGY	1 cut(s)	320
XspI	CTAG	1 cut(s)	604
ZrmI	AGTACT	1 cut(s)	386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.