Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8400203.1

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 572

Gene Structure 572 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8400203.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

gtggacatggtcataattccggcaagcactgggcagatgggtgttcttccgggacatgtggcaacaattgcagaattgaaacctggggtcctatcagtacatgaaggaaatgatgtgacaaagtacttcgtcagcagtggttttgcattcatccatgcgaactcttacgcagatataattgctgttgaggctgtccctatcgatcgagttgatccaagtcttgtccagaaagggcttgcggagttcactcagaagctaaactcagcctcaacggacttggagaaagctgaagcccagattggagttgacgtgcatagtgccctcaatgctgctctcacaggctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

114

Amino Acids

11.86

Weight (kDa)

4.75

Isoelectric Point (pI)

9.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	239
AclWI	GGATC	1 cut(s)	206
AcuI	CTGAAG	1 cut(s)	309
AfaI	GTAC	2 cut(s)	99, 125
AflIII	ACRYGT	1 cut(s)	55
AgsI	TTSAA	1 cut(s)	79
AjiI	CACGTC	1 cut(s)	310
AjnI	CCWGG	1 cut(s)	82
AjuI	GAANNNNNNNTTGG	2 cut(s)	282, 314
AluBI	AGCT	2 cut(s)	256, 287
AluI	AGCT	2 cut(s)	256, 287
AlwI	GGATC	1 cut(s)	206
ApeKI	GCWGC	1 cut(s)	329
AspS9I	GGNCC	1 cut(s)	88
AsuC2I	CCSGG	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	88
BaeGI	GKGCMC	1 cut(s)	322
BbvI	GCAGC	1 cut(s)	316
BccI	CCATC	1 cut(s)	31
BciT130I	CCWGG	1 cut(s)	84
BcnI	CCSGG	1 cut(s)	51
BfaI	CTAG	1 cut(s)	343
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
BmcAI	AGTACT	1 cut(s)	125
Bme1390I	CCNGG	2 cut(s)	51, 84
Bme18I	GGWCC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	310
BmgT120I	GGNCC	1 cut(s)	88
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	2 cut(s)	51, 84
BmrI	ACTGGG	1 cut(s)	39
BmuI	ACTGGG	1 cut(s)	39
BpuMI	CCSGG	1 cut(s)	51
Bsa29I	ATCGAT	1 cut(s)	201
BsaJI	CCNNGG	1 cut(s)	83
BsaXI	ACNNNNNCTCC	2 cut(s)	294, 324
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	84
BseCI	ATCGAT	1 cut(s)	201
BseDI	CCNNGG	1 cut(s)	83
BseGI	GGATG	1 cut(s)	150
BseMII	CTCAG	2 cut(s)	263, 276
BseNI	ACTGG	1 cut(s)	34
BseSI	GKGCMC	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	316
Bsh1285I	CGRYCG	1 cut(s)	205
BshVI	ATCGAT	1 cut(s)	201
BsiEI	CGRYCG	1 cut(s)	205
BsiSI	CCGG	2 cut(s)	20, 50
BslFI	GGGAC	2 cut(s)	66, 179
BsmFI	GGGAC	2 cut(s)	66, 179
BsmI	GAATGC	1 cut(s)	146
Bsp1286I	GDGCHC	1 cut(s)	322
Bsp143I	GATC	2 cut(s)	202, 211
BspACI	CCGC	1 cut(s)	239
BspCNI	CTCAG	2 cut(s)	262, 275
BspDI	ATCGAT	1 cut(s)	201
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	1 cut(s)	206
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	83
BssMI	GATC	2 cut(s)	202, 211
Bst2UI	CCWGG	1 cut(s)	84
BstAPI	GCANNNNNTGC	1 cut(s)	68
BstC8I	GCNNGC	2 cut(s)	25, 237
BstDEI	CTNAG	2 cut(s)	249, 262
BstF5I	GGATG	1 cut(s)	150
BstKTI	GATC	2 cut(s)	205, 214
BstMBI	GATC	2 cut(s)	202, 211
BstMCI	CGRYCG	1 cut(s)	205
BstMWI	GCNNNNNNNGC	3 cut(s)	68, 188, 326
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	59
BstSCI	CCNGG	2 cut(s)	49, 82
BstSLI	GKGCMC	1 cut(s)	322
BstV1I	GCAGC	1 cut(s)	316
Bsu15I	ATCGAT	1 cut(s)	201
BsuTUI	ATCGAT	1 cut(s)	201
BtrI	CACGTC	1 cut(s)	310
BtsCI	GGATG	1 cut(s)	150
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	2 cut(s)	27, 142
Cac8I	GCNNGC	2 cut(s)	25, 237
Cfr13I	GGNCC	1 cut(s)	88
ClaI	ATCGAT	1 cut(s)	201
Csp6I	GTAC	2 cut(s)	98, 124
CviAII	CATG	4 cut(s)	7, 56, 101, 155
CviJI	RGCY	7 cut(s)	191, 235, 256, 266, 287, 293, 342
CviKI_1	RGCY	7 cut(s)	191, 235, 256, 266, 287, 293, 342
CviQI	GTAC	2 cut(s)	98, 124
DdeI	CTNAG	2 cut(s)	249, 262
DpnI	GATC	2 cut(s)	204, 213
DpnII	GATC	2 cut(s)	202, 211
Eco47I	GGWCC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	309
EcoO109I	RGGNCCY	1 cut(s)	88
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	4 cut(s)	10, 59, 104, 158
FaiI	YATR	7 cut(s)	8, 14, 57, 102, 156, 176, 315
FaqI	GGGAC	2 cut(s)	66, 179
FatI	CATG	4 cut(s)	6, 55, 100, 154
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	1 cut(s)	343
GluI	GCNGC	1 cut(s)	330
HapII	CCGG	2 cut(s)	20, 50
Hin1II	CATG	4 cut(s)	10, 59, 104, 158
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HpaII	CCGG	2 cut(s)	20, 50
Hpy166II	GTNNAC	3 cut(s)	4, 246, 307
Hpy188I	TCNGA	1 cut(s)	252
Hpy188III	TCNNGA	1 cut(s)	226
Hpy8I	GTNNAC	3 cut(s)	4, 246, 307
HpyAV	CCTTC	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	309
HpyCH4V	TGCA	3 cut(s)	71, 146, 313
HpyF10VI	GCNNNNNNNGC	3 cut(s)	68, 188, 326
HpyF3I	CTNAG	2 cut(s)	249, 262
HpySE526I	ACGT	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	10, 59, 104, 158
Kzo9I	GATC	2 cut(s)	202, 211
LpnPI	CCDG	8 cut(s)	15, 33, 63, 69, 96, 239, 308, 324
Lsp1109I	GCAGC	1 cut(s)	316
MaeI	CTAG	1 cut(s)	343
MaeII	ACGT	1 cut(s)	309
MaeIII	GTNAC	1 cut(s)	115
MalI	GATC	2 cut(s)	204, 213
MboI	GATC	2 cut(s)	202, 211
MboII	GAAGA	1 cut(s)	38
MfeI	CAATTG	1 cut(s)	66
MhlI	GDGCHC	1 cut(s)	322
MluCI	AATT	4 cut(s)	15, 66, 74, 177
MnlI	CCTC	3 cut(s)	181, 277, 332
MspI	CCGG	2 cut(s)	20, 50
MspR9I	CCNGG	2 cut(s)	51, 84
MunI	CAATTG	1 cut(s)	66
Mva1269I	GAATGC	1 cut(s)	146
MvaI	CCWGG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	68, 188, 326
NciI	CCSGG	1 cut(s)	51
NdeII	GATC	2 cut(s)	202, 211
NlaIII	CATG	4 cut(s)	10, 59, 104, 158
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	115
NspI	RCATGY	1 cut(s)	59
PciI	ACATGT	1 cut(s)	55
PctI	GAATGC	1 cut(s)	146
PflFI	GACNNNGTC	1 cut(s)	8
PfoI	TCCNGGA	1 cut(s)	49
PkrI	GCNGC	1 cut(s)	331
Ple19I	CGATCG	1 cut(s)	205
PpuMI	RGGWCCY	1 cut(s)	88
PscI	ACATGT	1 cut(s)	55
Psp5II	RGGWCCY	1 cut(s)	88
Psp6I	CCWGG	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	88
PspPPI	RGGWCCY	1 cut(s)	88
PsyI	GACNNNGTC	1 cut(s)	8
PvuI	CGATCG	1 cut(s)	205
RsaI	GTAC	2 cut(s)	99, 125
RsaNI	GTAC	2 cut(s)	98, 124
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	2 cut(s)	202, 211
Sau96I	GGNCC	1 cut(s)	88
ScaI	AGTACT	1 cut(s)	125
ScrFI	CCNGG	2 cut(s)	51, 84
SduI	GDGCHC	1 cut(s)	322
SetI	ASST	4 cut(s)	85, 258, 289, 312
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	4 cut(s)	15, 66, 74, 177
SsiI	CCGC	1 cut(s)	239
SspMI	CTAG	1 cut(s)	343
StyD4I	CCNGG	2 cut(s)	49, 82
TaiI	ACGT	1 cut(s)	312
TaqI	TCGA	2 cut(s)	201, 205
TasI	AATT	4 cut(s)	15, 66, 74, 177
TatI	WGTACW	2 cut(s)	97, 123
TscAI	CASTG	2 cut(s)	34, 142
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	2 cut(s)	117, 139
TspGWI	ACGGA	1 cut(s)	287
TspRI	CASTG	2 cut(s)	34, 142
Tth111I	GACNNNGTC	1 cut(s)	8
VpaK11BI	GGWCC	1 cut(s)	88
XceI	RCATGY	1 cut(s)	59
XspI	CTAG	1 cut(s)	343
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.