Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

6877286 .. 6877603

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g07580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGCACTTAAATAAGGAACTTCAAGCTCTTAACCGGATCCACCATCTCCCTCAGGCCCGACGCTTCTCTAACGACGTCGCTGCGACTGCCCCAGCCGATTCGACTTTCGGTGACGCCTGGAAGAAAGTGGTGCCTCACATAGATCACCCAAAGACCCCATTGACCTTTATGAAGCCTCAGCCTGCAACCCCGTCGTCGATCCCCACTGTGCTCACTGTCAACTTTGTGCTCCCTTATTCGGCCGAACTTTTGGCGAAAGAGGTCAGTTTTCGGAGAGATTTGTTGTGGTTTTTTTTTTTTTTTTTTGCAATTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

106

Amino Acids

12.05

Weight (kDa)

9.6

Isoelectric Point (pI)

59.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	78
AccB1I	GGYRCC	1 cut(s)	130
AclWI	GGATC	3 cut(s)	31, 44, 193
AcoI	YGGCCR	1 cut(s)	240
AcyI	GRCGYC	2 cut(s)	75, 114
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	1 cut(s)	23
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	26
AluI	AGCT	1 cut(s)	26
Alw21I	GWGCWC	2 cut(s)	213, 231
AlwI	GGATC	3 cut(s)	31, 44, 193
AoxI	GGCC	2 cut(s)	54, 240
ApeKI	GCWGC	1 cut(s)	80
AspS9I	GGNCC	1 cut(s)	55
AsuHPI	GGTGA	2 cut(s)	122, 137
AxyI	CCTNAGG	1 cut(s)	51
BamHI	GGATCC	1 cut(s)	36
BanI	GGYRCC	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	213, 231
BbvCI	CCTCAGC	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	67
BccI	CCATC	1 cut(s)	51
BcgI	CGANNNNNNTGC	4 cut(s)	62, 96, 174, 208
BciT130I	CCWGG	1 cut(s)	118
BisI	GCNGC	1 cut(s)	81
BlsI	GCNGC	1 cut(s)	82
Bme1390I	CCNGG	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	2 cut(s)	38, 132
BmrFI	CCNGG	1 cut(s)	118
Bpu10I	CCTNAGC	1 cut(s)	177
BsaHI	GRCGYC	2 cut(s)	75, 114
BsaWI	WCCGGW	1 cut(s)	33
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse21I	CCTNAGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	118
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	2 cut(s)	65, 191
BseX3I	CGGCCG	1 cut(s)	240
BseXI	GCAGC	1 cut(s)	67
BseYI	CCCAGC	1 cut(s)	91
Bsh1285I	CGRYCG	1 cut(s)	243
BshFI	GGCC	2 cut(s)	56, 242
BshNI	GGYRCC	1 cut(s)	130
BsiEI	CGRYCG	1 cut(s)	243
BsiHKAI	GWGCWC	2 cut(s)	213, 231
BsiSI	CCGG	1 cut(s)	34
BslI	CCNNNNNNNGG	1 cut(s)	238
BsnI	GGCC	2 cut(s)	56, 242
Bsp1286I	GDGCHC	2 cut(s)	213, 231
Bsp143I	GATC	3 cut(s)	36, 142, 198
BspANI	GGCC	2 cut(s)	56, 242
BspCNI	CTCAG	2 cut(s)	64, 190
BspLI	GGNNCC	2 cut(s)	38, 132
BspPI	GGATC	3 cut(s)	31, 44, 193
BspT107I	GGYRCC	1 cut(s)	130
BssMI	GATC	3 cut(s)	36, 142, 198
BssNI	GRCGYC	2 cut(s)	75, 114
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	2 cut(s)	208, 217
BstACI	GRCGYC	2 cut(s)	75, 114
BstC8I	GCNNGC	1 cut(s)	183
BstDEI	CTNAG	2 cut(s)	51, 177
BstKTI	GATC	3 cut(s)	39, 145, 201
BstMBI	GATC	3 cut(s)	36, 142, 198
BstMCI	CGRYCG	1 cut(s)	243
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	1 cut(s)	116
BstV1I	GCAGC	1 cut(s)	67
BstX2I	RGATCY	1 cut(s)	36
BstYI	RGATCY	1 cut(s)	36
BstZI	CGGCCG	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	51
BsuRI	GGCC	2 cut(s)	56, 242
BtsIMutI	CAGTG	2 cut(s)	204, 213
Cac8I	GCNNGC	1 cut(s)	183
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	2 cut(s)	69, 122
CviJI	RGCY	6 cut(s)	26, 56, 95, 175, 181, 242
CviKI_1	RGCY	6 cut(s)	26, 56, 95, 175, 181, 242
DdeI	CTNAG	2 cut(s)	51, 177
DpnI	GATC	3 cut(s)	38, 144, 200
DpnII	GATC	3 cut(s)	36, 142, 198
EaeI	YGGCCR	1 cut(s)	240
EagI	CGGCCG	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	240
Eco52I	CGGCCG	1 cut(s)	240
Eco81I	CCTNAGG	1 cut(s)	51
EcoRII	CCWGG	1 cut(s)	116
FaiI	YATR	2 cut(s)	140, 170
Fnu4HI	GCNGC	1 cut(s)	81
Fsp4HI	GCNGC	1 cut(s)	81
GluI	GCNGC	1 cut(s)	81
GsaI	CCCAGC	1 cut(s)	95
HaeIII	GGCC	2 cut(s)	56, 242
HapII	CCGG	1 cut(s)	34
HgaI	GACGC	2 cut(s)	69, 122
Hin1I	GRCGYC	2 cut(s)	75, 114
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	98
HpaII	CCGG	1 cut(s)	34
HphI	GGTGA	2 cut(s)	122, 137
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	1 cut(s)	273
Hpy8I	GTNNAC	1 cut(s)	220
Hpy99I	CGWCG	5 cut(s)	63, 77, 80, 196, 199
HpyCH4III	ACNGT	2 cut(s)	208, 217
HpyCH4IV	ACGT	1 cut(s)	75
HpyCH4V	TGCA	3 cut(s)	4, 185, 308
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	2 cut(s)	51, 177
HpySE526I	ACGT	1 cut(s)	75
Hsp92I	GRCGYC	2 cut(s)	75, 114
Kzo9I	GATC	3 cut(s)	36, 142, 198
LmnI	GCTCC	1 cut(s)	234
LpnPI	CCDG	6 cut(s)	38, 47, 103, 105, 130, 195
Lsp1109I	GCAGC	1 cut(s)	67
MaeII	ACGT	1 cut(s)	75
MaeIII	GTNAC	1 cut(s)	110
MalI	GATC	3 cut(s)	38, 144, 200
MboI	GATC	3 cut(s)	36, 142, 198
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	36
MhlI	GDGCHC	2 cut(s)	213, 231
MluCI	AATT	1 cut(s)	309
MnlI	CCTC	4 cut(s)	60, 144, 186, 253
MseI	TTAA	2 cut(s)	8, 30
MspI	CCGG	1 cut(s)	34
MspR9I	CCNGG	1 cut(s)	118
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	86
NdeII	GATC	3 cut(s)	36, 142, 198
NlaIV	GGNNCC	2 cut(s)	38, 132
NmuCI	GTSAC	1 cut(s)	110
PfeI	GAWTC	1 cut(s)	98
PkrI	GCNGC	1 cut(s)	82
Psp6I	CCWGG	1 cut(s)	116
PspFI	CCCAGC	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	38, 132
PspPI	GGNCC	1 cut(s)	55
PsuI	RGATCY	1 cut(s)	36
SaqAI	TTAA	2 cut(s)	8, 30
SatI	GCNGC	1 cut(s)	81
Sau3AI	GATC	3 cut(s)	36, 142, 198
Sau96I	GGNCC	1 cut(s)	55
ScrFI	CCNGG	1 cut(s)	118
SduI	GDGCHC	2 cut(s)	213, 231
SetI	ASST	4 cut(s)	28, 78, 167, 264
SgeI	CNNG	9 cut(s)	35, 46, 65, 69, 104, 129, 130, 194, 202
Sse9I	AATT	1 cut(s)	309
StyD4I	CCNGG	1 cut(s)	116
TaaI	ACNGT	2 cut(s)	208, 217
TaiI	ACGT	1 cut(s)	78
TaqI	TCGA	2 cut(s)	101, 197
TasI	AATT	1 cut(s)	309
TfiI	GAWTC	1 cut(s)	98
Tru1I	TTAA	2 cut(s)	8, 30
Tru9I	TTAA	2 cut(s)	8, 30
TscAI	CASTG	2 cut(s)	211, 220
TseFI	GTSAC	1 cut(s)	110
TseI	GCWGC	1 cut(s)	80
Tsp45I	GTSAC	1 cut(s)	110
TspDTI	ATGAA	1 cut(s)	185
TspRI	CASTG	2 cut(s)	211, 220
ZraI	GACGTC	1 cut(s)	76

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.