Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007317.1

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

33867 .. 34181

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007317.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

atgctgcgccgcgccaccgctctcttgacccgacccgcatcctcactccgggccgcccgagccttctccaccgatgtcgccgaagctcccgtaggcaacccctctttcaacgaggcctggaagaaggtcatccctcacatcgagccccccaagactcctctgtccttcatgaagccccgccctccgaccccgtcctcgatccccaccaagctcaccgtcaacttcgtgctgccttacgcatcggagctctcggccaaagaggtcagtttcgaagcgatttcgtggatctatgagcttttaatttgttcgtattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

104

Amino Acids

11.52

Weight (kDa)

9.51

Isoelectric Point (pI)

48.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	160
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	1 cut(s)	12
AciI	CCGC	5 cut(s)	10, 18, 36, 54, 178
AclWI	GGATC	2 cut(s)	193, 293
AcoI	YGGCCR	1 cut(s)	252
AfiI	CCNNNNNNNGG	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	109
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	4 cut(s)	86, 211, 247, 295
AluI	AGCT	4 cut(s)	86, 211, 247, 295
Alw21I	GWGCWC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	193, 293
Ama87I	CYCGRG	1 cut(s)	57
AoxI	GGCC	3 cut(s)	51, 114, 252
ApeKI	GCWGC	2 cut(s)	4, 229
AspLEI	GCGC	2 cut(s)	9, 14
AspS9I	GGNCC	1 cut(s)	51
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	1 cut(s)	205
AsuII	TTCGAA	1 cut(s)	270
AvaI	CYCGRG	1 cut(s)	57
BanII	GRGCYC	2 cut(s)	147, 249
Bbv12I	GWGCWC	1 cut(s)	249
BbvI	GCAGC	1 cut(s)	216
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	50
BisI	GCNGC	4 cut(s)	5, 10, 54, 230
BlsI	GCNGC	4 cut(s)	6, 11, 55, 231
Bme1390I	CCNGG	2 cut(s)	50, 118
BmeT110I	CYCGRG	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	51
BmrFI	CCNGG	2 cut(s)	50, 118
BmsI	GCATC	2 cut(s)	47, 248
Bpu14I	TTCGAA	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	50
Bsc4I	CCNNNNNNNGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	118
BseGI	GGATG	2 cut(s)	38, 129
BseLI	CCNNNNNNNGG	1 cut(s)	48
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	216
Bsh1236I	CGCG	1 cut(s)	12
BshFI	GGCC	3 cut(s)	53, 116, 254
BsiHKAI	GWGCWC	1 cut(s)	249
BsiHKCI	CYCGRG	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	1 cut(s)	48
BsnI	GGCC	3 cut(s)	53, 116, 254
BsoBI	CYCGRG	1 cut(s)	57
Bsp119I	TTCGAA	1 cut(s)	270
Bsp1286I	GDGCHC	2 cut(s)	147, 249
Bsp143I	GATC	2 cut(s)	198, 285
BspACI	CCGC	5 cut(s)	10, 18, 36, 54, 178
BspANI	GGCC	3 cut(s)	53, 116, 254
BspFNI	CGCG	1 cut(s)	12
BspHI	TCATGA	1 cut(s)	168
BspPI	GGATC	2 cut(s)	193, 293
BspT104I	TTCGAA	1 cut(s)	270
BsrBI	CCGCTC	1 cut(s)	20
BssMI	GATC	2 cut(s)	198, 285
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	217
BstBI	TTCGAA	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	38, 129
BstFNI	CGCG	1 cut(s)	12
BstHHI	GCGC	2 cut(s)	9, 14
BstKTI	GATC	2 cut(s)	201, 288
BstMBI	GATC	2 cut(s)	198, 285
BstMWI	GCNNNNNNNGC	1 cut(s)	59
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	48, 116
BstUI	CGCG	1 cut(s)	12
BstV1I	GCAGC	1 cut(s)	216
BstX2I	RGATCY	1 cut(s)	285
BstYI	RGATCY	1 cut(s)	285
BsuRI	GGCC	3 cut(s)	53, 116, 254
BtsCI	GGATG	2 cut(s)	38, 129
CciI	TCATGA	1 cut(s)	168
CfoI	GCGC	2 cut(s)	9, 14
Cfr13I	GGNCC	1 cut(s)	51
CviAII	CATG	1 cut(s)	169
DpnI	GATC	2 cut(s)	200, 287
DpnII	GATC	2 cut(s)	198, 285
DrdI	GACNNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	1 cut(s)	160
EaeI	YGGCCR	1 cut(s)	252
Ecl136II	GAGCTC	1 cut(s)	247
Eco147I	AGGCCT	1 cut(s)	116
Eco24I	GRGCYC	2 cut(s)	147, 249
Eco53kI	GAGCTC	1 cut(s)	247
Eco88I	CYCGRG	1 cut(s)	57
EcoICRI	GAGCTC	1 cut(s)	247
EcoRII	CCWGG	1 cut(s)	116
EcoT38I	GRGCYC	2 cut(s)	147, 249
FaeI	CATG	1 cut(s)	172
FaiI	YATR	2 cut(s)	170, 291
FatI	CATG	1 cut(s)	168
FauI	CCCGC	2 cut(s)	43, 185
Fnu4HI	GCNGC	4 cut(s)	5, 10, 54, 230
FokI	GGATG	2 cut(s)	25, 116
FriOI	GRGCYC	2 cut(s)	147, 249
Fsp4HI	GCNGC	4 cut(s)	5, 10, 54, 230
GlaI	GCGC	2 cut(s)	8, 13
GluI	GCNGC	4 cut(s)	5, 10, 54, 230
HaeIII	GGCC	3 cut(s)	53, 116, 254
HapII	CCGG	1 cut(s)	49
HhaI	GCGC	2 cut(s)	9, 14
Hin1II	CATG	1 cut(s)	172
Hin6I	GCGC	2 cut(s)	7, 12
HinP1I	GCGC	2 cut(s)	7, 12
HincII	GTYRAC	1 cut(s)	220
HindII	GTYRAC	1 cut(s)	220
HinfI	GANTC	1 cut(s)	154
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	220
Hpy188I	TCNGA	2 cut(s)	186, 244
Hpy188III	TCNNGA	2 cut(s)	25, 169
Hpy8I	GTNNAC	1 cut(s)	220
HpyAV	CCTTC	3 cut(s)	73, 118, 175
HpyCH4III	ACNGT	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	59
Hsp92II	CATG	1 cut(s)	172
HspAI	GCGC	2 cut(s)	7, 12
Kzo9I	GATC	2 cut(s)	198, 285
LmnI	GCTCC	2 cut(s)	91, 244
LpnPI	CCDG	3 cut(s)	62, 103, 130
Lsp1109I	GCAGC	1 cut(s)	216
LweI	GCATC	2 cut(s)	47, 248
MalI	GATC	2 cut(s)	200, 287
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	2 cut(s)	198, 285
MboII	GAAGA	1 cut(s)	133
MflI	RGATCY	1 cut(s)	285
MhlI	GDGCHC	2 cut(s)	147, 249
MluCI	AATT	1 cut(s)	300
MlyI	GAGTC	1 cut(s)	148
MmeI	TCCRAC	1 cut(s)	209
MnlI	CCTC	8 cut(s)	52, 106, 112, 144, 168, 192, 205, 253
MseI	TTAA	1 cut(s)	299
MspI	CCGG	1 cut(s)	49
MspR9I	CCNGG	2 cut(s)	50, 118
MteI	GCGCNGCGC	1 cut(s)	10
MvaI	CCWGG	1 cut(s)	118
MvnI	CGCG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	59
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	2 cut(s)	198, 285
NlaIII	CATG	1 cut(s)	172
NmeAIII	GCCGAG	1 cut(s)	230
NspV	TTCGAA	1 cut(s)	270
PagI	TCATGA	1 cut(s)	168
PceI	AGGCCT	1 cut(s)	116
PflFI	GACNNNGTC	1 cut(s)	190
PkrI	GCNGC	4 cut(s)	6, 11, 55, 231
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
Psp124BI	GAGCTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	51
PsuI	RGATCY	1 cut(s)	285
PsyI	GACNNNGTC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	249
SaqAI	TTAA	1 cut(s)	299
SatI	GCNGC	4 cut(s)	5, 10, 54, 230
Sau3AI	GATC	2 cut(s)	198, 285
Sau96I	GGNCC	1 cut(s)	51
SchI	GAGTC	1 cut(s)	148
ScrFI	CCNGG	2 cut(s)	50, 118
SduI	GDGCHC	2 cut(s)	147, 249
SetI	ASST	6 cut(s)	88, 129, 213, 249, 264, 297
SfaNI	GCATC	2 cut(s)	47, 248
SfuI	TTCGAA	1 cut(s)	270
Sse9I	AATT	1 cut(s)	300
SseBI	AGGCCT	1 cut(s)	116
SsiI	CCGC	5 cut(s)	10, 18, 36, 54, 178
SstI	GAGCTC	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	48, 116
TaaI	ACNGT	1 cut(s)	217
TaqI	TCGA	3 cut(s)	141, 197, 270
TasI	AATT	1 cut(s)	300
TauI	GCSGC	2 cut(s)	12, 56
Tru1I	TTAA	1 cut(s)	299
Tru9I	TTAA	1 cut(s)	299
TseI	GCWGC	2 cut(s)	4, 229
TspDTI	ATGAA	2 cut(s)	157, 185
Tth111I	GACNNNGTC	1 cut(s)	190

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.