pycom06g03600

ATP synthase subunit delta'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0003919
Physical Location & Seq
Forward (+)
4509322 .. 4511089
1768 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g03600.1

Sequence Viewer

Length: 603 bp
ATGTTCCGGCAAGCATCACGTCTCTTGGGTCGATCCAGTCGGCCGCCGAGGATCCGTGCCATGTGCACAGAGGTCCCAGCGAATAGCAACAAGGACTCAGCCTTCGTGGAAGCATGGAAGAAAGTGAGTTCAACCATGGAGCCACCCCACACTCCATCAACGTACATGGAACCTCGCCCTCCCACCCCTTCTTCCCTCCCTTCCAAACTCACCGTCAACTTCGTCCTCCCTTATTCCTCCCAGCTCTCCGGCAAAGAGGTTGACATGGTCATGGTACCAGCAACAACTGGGCAAATGGGTGTTTTGCCGGGCCATGTTCCAACGATCGCAGAGCTCAAGCCCGGGGTCCTATCGGTGCATGAAGGCAGCGACGTGACAAAGTATTTTGTGAGCAGCGGGTTTGCTTTCATTCATGCAAATTCTGTTGCTGATATAGTGGCTGTGGAGGCAGTGCCGATTGACCAGATTGACGCAAGCTTAGTACAAAAGGGGCTTGCGGAGTTCACCCAGAAGCTTTCTTCGTCTACCACTGATTTGGAGAAAGCTGAGGCTCAGATTGGAGTTGATGTTCATAGTGCTCTCAACTCTGCCATCACTGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_DE_N

Protein Analysis

201

Amino Acids

21.34

Weight (kDa)

6.2

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 70 - 142 2.7e-18 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 274
AccB1I GGYRCC 1 cut(s) 274
AccI GTMKAC 1 cut(s) 524
AciI CCGC 3 cut(s) 44, 396, 497
AclWI GGATC 3 cut(s) 27, 46, 59
AcoI YGGCCR 1 cut(s) 41
AcsI RAATTY 1 cut(s) 418
AfaI GTAC 3 cut(s) 164, 276, 483
AgsI TTSAA 1 cut(s) 132
AjiI CACGTC 2 cut(s) 20, 373
AloI GAACNNNNNNTCC 2 cut(s) 552, 584
AluBI AGCT 5 cut(s) 244, 334, 477, 514, 545
AluI AGCT 5 cut(s) 244, 334, 477, 514, 545
Alw21I GWGCWC 3 cut(s) 68, 336, 580
Alw26I GTCTC 1 cut(s) 26
Alw44I GTGCAC 1 cut(s) 64
AlwI GGATC 3 cut(s) 27, 46, 59
Ama87I CYCGRG 1 cut(s) 341
AoxI GGCC 2 cut(s) 41, 310
ApaLI GTGCAC 1 cut(s) 64
ApeKI GCWGC 2 cut(s) 366, 393
ApoI RAATTY 1 cut(s) 418
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 198, 230
Asp718I GGTACC 1 cut(s) 274
AspS9I GGNCC 3 cut(s) 73, 310, 346
AsuC2I CCSGG 3 cut(s) 309, 342, 343
AsuHPI GGTGA 2 cut(s) 202, 496
AvaI CYCGRG 1 cut(s) 341
AvaII GGWCC 2 cut(s) 73, 346
BaeGI GKGCMC 1 cut(s) 68
BamHI GGATCC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 274
BanII GRGCYC 1 cut(s) 336
Bbv12I GWGCWC 3 cut(s) 68, 336, 580
BbvCI CCTCAGC 1 cut(s) 546
BbvI GCAGC 2 cut(s) 378, 405
BccI CCATC 2 cut(s) 163, 599
BcnI CCSGG 3 cut(s) 309, 342, 343
BcoDI GTCTC 1 cut(s) 26
BisI GCNGC 3 cut(s) 44, 367, 394
BlsI GCNGC 3 cut(s) 45, 368, 395
Bme1390I CCNGG 3 cut(s) 309, 342, 343
Bme18I GGWCC 2 cut(s) 73, 346
BmeT110I CYCGRG 1 cut(s) 341
BmgBI CACGTC 2 cut(s) 20, 373
BmgT120I GGNCC 3 cut(s) 73, 310, 346
BmiI GGNNCC 6 cut(s) 53, 75, 141, 171, 276, 347
BmrFI CCNGG 3 cut(s) 309, 342, 343
BmrI ACTGGG 1 cut(s) 297
BmsI GCATC 1 cut(s) 23
BmuI ACTGGG 1 cut(s) 297
Bpu10I CCTNAGC 1 cut(s) 546
BpuEI CTTGAG 1 cut(s) 320
BpuMI CCSGG 3 cut(s) 309, 342, 343
BsaJI CCNNGG 4 cut(s) 47, 135, 341, 342
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bse1I ACTGG 3 cut(s) 36, 292, 601
BseDI CCNNGG 4 cut(s) 47, 135, 341, 342
BseMII CTCAG 3 cut(s) 111, 537, 566
BseNI ACTGG 3 cut(s) 36, 292, 601
BseSI GKGCMC 1 cut(s) 68
BseX3I CGGCCG 1 cut(s) 41
BseXI GCAGC 2 cut(s) 378, 405
BseYI CCCAGC 2 cut(s) 76, 240
Bsh1285I CGRYCG 2 cut(s) 44, 327
BshFI GGCC 2 cut(s) 43, 312
BshNI GGYRCC 1 cut(s) 274
BsiEI CGRYCG 2 cut(s) 44, 327
BsiHKAI GWGCWC 3 cut(s) 68, 336, 580
BsiHKCI CYCGRG 1 cut(s) 341
BsiSI CCGG 4 cut(s) 7, 249, 308, 342
BslFI GGGAC 1 cut(s) 59
BsmAI GTCTC 1 cut(s) 26
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 1 cut(s) 59
BsnI GGCC 2 cut(s) 43, 312
BsoBI CYCGRG 1 cut(s) 341
Bsp1286I GDGCHC 3 cut(s) 68, 336, 580
Bsp143I GATC 3 cut(s) 32, 51, 324
Bsp19I CCATGG 1 cut(s) 135
BspACI CCGC 3 cut(s) 44, 396, 497
BspANI GGCC 2 cut(s) 43, 312
BspCNI CTCAG 3 cut(s) 110, 538, 565
BspLI GGNNCC 6 cut(s) 53, 75, 141, 171, 276, 347
BspPI GGATC 3 cut(s) 27, 46, 59
BspT107I GGYRCC 1 cut(s) 274
BsrI ACTGG 3 cut(s) 36, 292, 601
BssECI CCNNGG 4 cut(s) 47, 135, 341, 342
BssMI GATC 3 cut(s) 32, 51, 324
BssT1I CCWWGG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 214
BstC8I GCNNGC 3 cut(s) 12, 475, 495
BstDEI CTNAG 4 cut(s) 97, 478, 546, 552
BstDSI CCRYGG 1 cut(s) 135
BstKTI GATC 3 cut(s) 35, 54, 327
BstMAI GTCTC 1 cut(s) 26
BstMBI GATC 3 cut(s) 32, 51, 324
BstMCI CGRYCG 2 cut(s) 44, 327
BstMWI GCNNNNNNNGC 1 cut(s) 446
BstSCI CCNGG 3 cut(s) 307, 340, 341
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 378, 405
BstX2I RGATCY 1 cut(s) 51
BstXI CCANNNNNNTGG 1 cut(s) 535
BstYI RGATCY 1 cut(s) 51
BstZI CGGCCG 1 cut(s) 41
BsuRI GGCC 2 cut(s) 43, 312
BtgI CCRYGG 1 cut(s) 135
BtrI CACGTC 2 cut(s) 20, 373
BtsI GCAGTG 1 cut(s) 456
BtsIMutI CAGTG 3 cut(s) 456, 528, 594
Cac8I GCNNGC 3 cut(s) 12, 475, 495
Cfr13I GGNCC 3 cut(s) 73, 310, 346
Cfr9I CCCGGG 1 cut(s) 341
CseI GACGC 1 cut(s) 479
Csp6I GTAC 3 cut(s) 163, 275, 482
CviAII CATG 9 cut(s) 61, 114, 136, 166, 265, 271, 314, 359, 413
CviQI GTAC 3 cut(s) 163, 275, 482
DdeI CTNAG 4 cut(s) 97, 478, 546, 552
DpnI GATC 3 cut(s) 34, 53, 326
DpnII GATC 3 cut(s) 32, 51, 324
EaeI YGGCCR 1 cut(s) 41
EagI CGGCCG 1 cut(s) 41
Ecl136II GAGCTC 1 cut(s) 334
EclXI CGGCCG 1 cut(s) 41
Eco130I CCWWGG 1 cut(s) 135
Eco24I GRGCYC 1 cut(s) 336
Eco47I GGWCC 2 cut(s) 73, 346
Eco52I CGGCCG 1 cut(s) 41
Eco53kI GAGCTC 1 cut(s) 334
Eco88I CYCGRG 1 cut(s) 341
EcoICRI GAGCTC 1 cut(s) 334
EcoO109I RGGNCCY 2 cut(s) 73, 346
EcoT14I CCWWGG 1 cut(s) 135
EcoT38I GRGCYC 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 135
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 9 cut(s) 64, 117, 139, 169, 268, 274, 317, 362, 416
FaqI GGGAC 1 cut(s) 59
FatI CATG 9 cut(s) 60, 113, 135, 165, 264, 270, 313, 358, 412
FauI CCCGC 1 cut(s) 389
FblI GTMKAC 1 cut(s) 524
Fnu4HI GCNGC 3 cut(s) 44, 367, 394
FriOI GRGCYC 1 cut(s) 336
Fsp4HI GCNGC 3 cut(s) 44, 367, 394
GluI GCNGC 3 cut(s) 44, 367, 394
GsaI CCCAGC 2 cut(s) 80, 244
HaeIII GGCC 2 cut(s) 43, 312
HapII CCGG 4 cut(s) 7, 249, 308, 342
HgaI GACGC 1 cut(s) 479
Hin1II CATG 9 cut(s) 64, 117, 139, 169, 268, 274, 317, 362, 416
HincII GTYRAC 2 cut(s) 217, 262
HindII GTYRAC 2 cut(s) 217, 262
HindIII AAGCTT 2 cut(s) 475, 512
HinfI GANTC 1 cut(s) 95
HpaII CCGG 4 cut(s) 7, 249, 308, 342
HphI GGTGA 2 cut(s) 202, 496
Hpy166II GTNNAC 5 cut(s) 66, 217, 262, 504, 525
Hpy188I TCNGA 1 cut(s) 555
Hpy8I GTNNAC 5 cut(s) 66, 217, 262, 504, 525
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 112, 198, 210, 356
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 3 cut(s) 19, 161, 372
HpyCH4V TGCA 3 cut(s) 66, 358, 416
HpyF10VI GCNNNNNNNGC 1 cut(s) 446
HpyF3I CTNAG 4 cut(s) 97, 478, 546, 552
HpySE526I ACGT 3 cut(s) 19, 161, 372
Hsp92II CATG 9 cut(s) 64, 117, 139, 169, 268, 274, 317, 362, 416
KpnI GGTACC 1 cut(s) 278
Kzo9I GATC 3 cut(s) 32, 51, 324
LmnI GCTCC 1 cut(s) 139
Lsp1109I GCAGC 2 cut(s) 378, 405
LweI GCATC 1 cut(s) 23
MaeII ACGT 3 cut(s) 19, 161, 372
MaeIII GTNAC 1 cut(s) 373
MalI GATC 3 cut(s) 34, 53, 326
MboI GATC 3 cut(s) 32, 51, 324
MboII GAAGA 3 cut(s) 130, 183, 510
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 3 cut(s) 68, 336, 580
MluCI AATT 1 cut(s) 418
MlyI GAGTC 1 cut(s) 89
MmeI TCCRAC 1 cut(s) 344
MslI CAYNNNNRTG 1 cut(s) 269
MspA1I CMGCKG 1 cut(s) 396
MspI CCGG 4 cut(s) 7, 249, 308, 342
MspR9I CCNGG 3 cut(s) 309, 342, 343
MwoI GCNNNNNNNGC 1 cut(s) 446
NciI CCSGG 3 cut(s) 309, 342, 343
NcoI CCATGG 1 cut(s) 135
NdeII GATC 3 cut(s) 32, 51, 324
NlaIII CATG 9 cut(s) 64, 117, 139, 169, 268, 274, 317, 362, 416
NlaIV GGNNCC 6 cut(s) 53, 75, 141, 171, 276, 347
NmeAIII GCCGAG 1 cut(s) 72
NmuCI GTSAC 1 cut(s) 373
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 3 cut(s) 45, 368, 395
Ple19I CGATCG 1 cut(s) 327
PleI GAGTC 1 cut(s) 89
PpsI GAGTC 1 cut(s) 89
PpuMI RGGWCCY 2 cut(s) 73, 346
Psp124BI GAGCTC 1 cut(s) 336
Psp5II RGGWCCY 2 cut(s) 73, 346
PspFI CCCAGC 2 cut(s) 76, 240
PspN4I GGNNCC 6 cut(s) 53, 75, 141, 171, 276, 347
PspPI GGNCC 3 cut(s) 73, 310, 346
PspPPI RGGWCCY 2 cut(s) 73, 346
PsuI RGATCY 1 cut(s) 51
PsyI GACNNNGTC 1 cut(s) 266
PvuI CGATCG 1 cut(s) 327
RsaI GTAC 3 cut(s) 164, 276, 483
RsaNI GTAC 3 cut(s) 163, 275, 482
RseI CAYNNNNRTG 1 cut(s) 269
SacI GAGCTC 1 cut(s) 336
SatI GCNGC 3 cut(s) 44, 367, 394
Sau3AI GATC 3 cut(s) 32, 51, 324
Sau96I GGNCC 3 cut(s) 73, 310, 346
SchI GAGTC 1 cut(s) 89
ScrFI CCNGG 3 cut(s) 309, 342, 343
SduI GDGCHC 3 cut(s) 68, 336, 580
SfaNI GCATC 1 cut(s) 23
SinI GGWCC 2 cut(s) 73, 346
SmaI CCCGGG 1 cut(s) 343
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 335
SmoI CTYRAG 1 cut(s) 335
Sse9I AATT 1 cut(s) 418
SsiI CCGC 3 cut(s) 44, 396, 497
SstI GAGCTC 1 cut(s) 336
StyD4I CCNGG 3 cut(s) 307, 340, 341
StyI CCWWGG 1 cut(s) 135
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 3 cut(s) 22, 164, 375
TaqI TCGA 1 cut(s) 31
TasI AATT 1 cut(s) 418
TatI WGTACW 1 cut(s) 481
TauI GCSGC 1 cut(s) 46
TscAI CASTG 3 cut(s) 456, 535, 601
TseFI GTSAC 1 cut(s) 373
TseI GCWGC 2 cut(s) 366, 393
Tsp45I GTSAC 1 cut(s) 373
TspDTI ATGAA 4 cut(s) 375, 397, 401, 560
TspGWI ACGGA 1 cut(s) 44
TspMI CCCGGG 1 cut(s) 341
TspRI CASTG 3 cut(s) 456, 535, 601
Tth111I GACNNNGTC 1 cut(s) 266
VneI GTGCAC 1 cut(s) 64
VpaK11BI GGWCC 2 cut(s) 73, 346
XapI RAATTY 1 cut(s) 418
XmaI CCCGGG 1 cut(s) 341
XmiI GTMKAC 1 cut(s) 524
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.