Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003919

Physical Location & Seq

Genomic Coordinates Forward (+)

9866745 .. 9874380

Gene Structure 7636 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1092700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGCTTCGCCGAGCCACCACCCTCTTGACCCGATCCACGATCCCCCTCAGGGCCCGACCCTTCTCTACCGACGTCGCTGAGACTGCCCCAGCCGATTCGACTTTCAGTGATGCCTGGAAGAAAGTGGTGCCTCACATAGATCCCCCAAGGACCCCATTGACCTTCATGAAGCCTAGGCCTGTAACCCCGTCATCGATCCCCACTAAGCTGACTGTCAATTTCGTGCTCCCTTATGCGTCCGAACTTTCGGCGAAAGAGGTGGATATGGTAATAATACCAGCAACCACTGGCCATATGGGTGTTCTTCCTGGACATGTAGCAACAATTGCCGAGTTGAAACCCGGGGTCATGTCAGTGCATGAAGGAAATGATGTCACAAAATATTTCGTCAGCAGTGGTTTTGCATTCATCCACGCCAACTCTATTGCAGACATAATTGCTGTAGAGGCTGTCCCTCTTGATCGTGTCGATGCAAGTCTTGTCCAGAAGGGGCTTGCAGAGTTTACCCAGAAGCTCAACTCAGCGTCGACTGACTTGGAGAAAGCTGAAGCCCAGATTGGAGTTGATGTGCATAGTGCCCTAAACTCTGCTCTCACCGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016

Pfam Domains

Protein Families

ATP-synt_DE_N

Protein Analysis

201

Amino Acids

21.36

Weight (kDa)

6.29

Isoelectric Point (pI)

29.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_DE_N	PF02823	70 - 142	5e-16	ATP synthase, Delta/Epsilon chain, beta-sandwich domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003919)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47030
fragaria_vesca	FvH4_5g20890 FvH4_7g08910
malus_domestica	MD02G1222900.v1.1 MD06G1043000.v1.1 MD07G1092700.v1.1
prunus_persica	Prupe.2G118300_v2.0.a1 Prupe.5G049800_v2.0.a1
pyrus_communis	pycom02g18930 pycom06g03600 pycom07g07580 pycom07g07610
rosa_chinensis	RchiOBHm_Chr1g0344351 RchiOBHm_Chr7g0207921
rosa_laevigata	RLG00000003275 RLG00000028906
rosa_multiflora	Rmu_co8400203.1_g000001 Rmu_sc0006577.1_g000005 Rmu_sc0007317.1_g000006
rosa_roxburghii	Rroxscaffold_3G00251040 Rroxscaffold_4G00309850
rosa_rugosa	Rorug01G0173200 Rorug07G0100300
rosa_samantha	Rh1AG189500 Rh1BG156100 Rh1CG175200 Rh1DG187700 Rh7AG233800 Rh7BG229300 Rh7CG249000 Rh7DG239800
rosa_wichuraiana	Rw0G001280 Rw0G017700 Rw1G015610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	75
AccB1I	GGYRCC	1 cut(s)	127
AccI	GTMKAC	1 cut(s)	527
AclWI	GGATC	4 cut(s)	27, 34, 134, 190
AcoI	YGGCCR	1 cut(s)	289
AcuI	CTGAAG	1 cut(s)	567
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	1 cut(s)	49
AflIII	ACRYGT	1 cut(s)	313
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	2 cut(s)	113, 307
AjuI	GAANNNNNNNTTGG	2 cut(s)	540, 572
AluBI	AGCT	3 cut(s)	208, 514, 545
AluI	AGCT	3 cut(s)	208, 514, 545
Alw21I	GWGCWC	1 cut(s)	228
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	4 cut(s)	27, 34, 134, 190
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	3 cut(s)	51, 176, 289
ApaI	GGGCCC	1 cut(s)	55
AspA2I	CCTAGG	1 cut(s)	173
AspS9I	GGNCC	3 cut(s)	51, 52, 150
AsuC2I	CCSGG	2 cut(s)	342, 343
AsuHPI	GGTGA	1 cut(s)	586
AvaI	CYCGRG	1 cut(s)	341
AvaII	GGWCC	1 cut(s)	150
AvrII	CCTAGG	1 cut(s)	173
AxyI	CCTNAGG	1 cut(s)	47
BaeGI	GKGCMC	2 cut(s)	55, 580
BalI	TGGCCA	1 cut(s)	291
BanI	GGYRCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	228
BciT130I	CCWGG	2 cut(s)	115, 309
BcnI	CCSGG	2 cut(s)	342, 343
BcoDI	GTCTC	1 cut(s)	74
BfaI	CTAG	2 cut(s)	174, 601
BfmI	CTRYAG	1 cut(s)	441
BlnI	CCTAGG	1 cut(s)	173
Bme1390I	CCNGG	4 cut(s)	115, 309, 342, 343
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	3 cut(s)	51, 52, 150
BmiI	GGNNCC	3 cut(s)	53, 129, 152
BmrFI	CCNGG	4 cut(s)	115, 309, 342, 343
BmsI	GCATC	2 cut(s)	100, 460
BpuMI	CCSGG	2 cut(s)	342, 343
Bsa29I	ATCGAT	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	4 cut(s)	146, 173, 341, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	1 cut(s)	49
Bse118I	RCCGGY	1 cut(s)	596
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	47
BseBI	CCWGG	2 cut(s)	115, 309
BseCI	ATCGAT	1 cut(s)	194
BseDI	CCNNGG	4 cut(s)	146, 173, 341, 342
BseGI	GGATG	1 cut(s)	408
BseLI	CCNNNNNNNGG	1 cut(s)	49
BseMII	CTCAG	3 cut(s)	61, 69, 534
BseNI	ACTGG	1 cut(s)	292
BseSI	GKGCMC	2 cut(s)	55, 580
BseYI	CCCAGC	1 cut(s)	88
BshFI	GGCC	3 cut(s)	53, 178, 291
BshNI	GGYRCC	1 cut(s)	127
BshVI	ATCGAT	1 cut(s)	194
BsiHKAI	GWGCWC	1 cut(s)	228
BsiHKCI	CYCGRG	1 cut(s)	341
BsiSI	CCGG	2 cut(s)	342, 597
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	1 cut(s)	49
BsmAI	GTCTC	1 cut(s)	74
BsmFI	GGGAC	1 cut(s)	437
BsmI	GAATGC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	53, 178, 291
BsoBI	CYCGRG	1 cut(s)	341
Bsp120I	GGGCCC	1 cut(s)	51
Bsp1286I	GDGCHC	3 cut(s)	55, 228, 580
Bsp143I	GATC	5 cut(s)	32, 39, 139, 195, 460
BspANI	GGCC	3 cut(s)	53, 178, 291
BspCNI	CTCAG	3 cut(s)	60, 70, 533
BspDI	ATCGAT	1 cut(s)	194
BspHI	TCATGA	1 cut(s)	165
BspLI	GGNNCC	3 cut(s)	53, 129, 152
BspPI	GGATC	4 cut(s)	27, 34, 134, 190
BspT107I	GGYRCC	1 cut(s)	127
BsrFI	RCCGGY	1 cut(s)	596
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	1 cut(s)	596
BssECI	CCNNGG	4 cut(s)	146, 173, 341, 342
BssMI	GATC	5 cut(s)	32, 39, 139, 195, 460
BssNI	GRCGYC	1 cut(s)	72
BssT1I	CCWWGG	2 cut(s)	146, 173
Bst2UI	CCWGG	2 cut(s)	115, 309
Bst4CI	ACNGT	1 cut(s)	214
BstACI	GRCGYC	1 cut(s)	72
BstAPI	GCANNNNNTGC	1 cut(s)	326
BstC8I	GCNNGC	1 cut(s)	495
BstDEI	CTNAG	4 cut(s)	47, 78, 204, 520
BstF5I	GGATG	1 cut(s)	408
BstKTI	GATC	5 cut(s)	35, 42, 142, 198, 463
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	5 cut(s)	32, 39, 139, 195, 460
BstMWI	GCNNNNNNNGC	3 cut(s)	83, 326, 446
BstNI	CCWGG	2 cut(s)	115, 309
BstNSI	RCATGY	1 cut(s)	317
BstSCI	CCNGG	4 cut(s)	113, 307, 340, 341
BstSFI	CTRYAG	1 cut(s)	441
BstSLI	GKGCMC	2 cut(s)	55, 580
BstX2I	RGATCY	1 cut(s)	139
BstYI	RGATCY	1 cut(s)	139
Bsu15I	ATCGAT	1 cut(s)	194
Bsu36I	CCTNAGG	1 cut(s)	47
BsuRI	GGCC	3 cut(s)	53, 178, 291
BsuTUI	ATCGAT	1 cut(s)	194
BtsCI	GGATG	1 cut(s)	408
BtsI	GCAGTG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	112, 285, 360, 400
Cac8I	GCNNGC	1 cut(s)	495
CciI	TCATGA	1 cut(s)	165
Cfr10I	RCCGGY	1 cut(s)	596
Cfr13I	GGNCC	3 cut(s)	51, 52, 150
Cfr9I	CCCGGG	1 cut(s)	341
ClaI	ATCGAT	1 cut(s)	194
CseI	GACGC	2 cut(s)	225, 513
CviAII	CATG	4 cut(s)	166, 314, 349, 359
DdeI	CTNAG	4 cut(s)	47, 78, 204, 520
DpnI	GATC	5 cut(s)	34, 41, 141, 197, 462
DpnII	GATC	5 cut(s)	32, 39, 139, 195, 460
EaeI	YGGCCR	1 cut(s)	289
Eco130I	CCWWGG	2 cut(s)	146, 173
Eco147I	AGGCCT	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	55
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	567
Eco81I	CCTNAGG	1 cut(s)	47
Eco88I	CYCGRG	1 cut(s)	341
EcoO109I	RGGNCCY	2 cut(s)	51, 150
EcoRII	CCWGG	2 cut(s)	113, 307
EcoT14I	CCWWGG	2 cut(s)	146, 173
EcoT38I	GRGCYC	1 cut(s)	55
ErhI	CCWWGG	2 cut(s)	146, 173
FaeI	CATG	4 cut(s)	169, 317, 352, 362
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	4 cut(s)	165, 313, 348, 358
FauNDI	CATATG	1 cut(s)	294
FblI	GTMKAC	1 cut(s)	527
FokI	GGATG	1 cut(s)	395
FriOI	GRGCYC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	174, 601
GsaI	CCCAGC	1 cut(s)	92
HaeIII	GGCC	3 cut(s)	53, 178, 291
HapII	CCGG	2 cut(s)	342, 597
HgaI	GACGC	2 cut(s)	225, 513
Hin1I	GRCGYC	1 cut(s)	72
Hin1II	CATG	4 cut(s)	169, 317, 352, 362
HincII	GTYRAC	1 cut(s)	528
HindII	GTYRAC	1 cut(s)	528
HinfI	GANTC	1 cut(s)	95
HpaII	CCGG	2 cut(s)	342, 597
HphI	GGTGA	1 cut(s)	586
Hpy166II	GTNNAC	2 cut(s)	504, 528
Hpy188I	TCNGA	1 cut(s)	241
Hpy188III	TCNNGA	4 cut(s)	25, 166, 458, 484
Hpy8I	GTNNAC	2 cut(s)	504, 528
Hpy99I	CGWCG	3 cut(s)	74, 77, 529
HpyAV	CCTTC	4 cut(s)	70, 172, 356, 481
HpyCH4III	ACNGT	1 cut(s)	214
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	6 cut(s)	358, 404, 428, 473, 497, 571
HpyF10VI	GCNNNNNNNGC	3 cut(s)	83, 326, 446
HpyF3I	CTNAG	4 cut(s)	47, 78, 204, 520
HpySE526I	ACGT	1 cut(s)	72
Hsp92I	GRCGYC	1 cut(s)	72
Hsp92II	CATG	4 cut(s)	169, 317, 352, 362
Kzo9I	GATC	5 cut(s)	32, 39, 139, 195, 460
LmnI	GCTCC	1 cut(s)	231
LweI	GCATC	2 cut(s)	100, 460
MaeI	CTAG	2 cut(s)	174, 601
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	2 cut(s)	181, 373
MalI	GATC	5 cut(s)	34, 41, 141, 197, 462
MboI	GATC	5 cut(s)	32, 39, 139, 195, 460
MboII	GAAGA	2 cut(s)	130, 296
MfeI	CAATTG	1 cut(s)	324
MflI	RGATCY	1 cut(s)	139
MhlI	GDGCHC	3 cut(s)	55, 228, 580
MlsI	TGGCCA	1 cut(s)	291
MluCI	AATT	3 cut(s)	217, 324, 435
MluNI	TGGCCA	1 cut(s)	291
MnlI	CCTC	6 cut(s)	32, 56, 141, 250, 439, 465
Mox20I	TGGCCA	1 cut(s)	291
MscI	TGGCCA	1 cut(s)	291
MslI	CAYNNNNRTG	2 cut(s)	297, 353
Msp20I	TGGCCA	1 cut(s)	291
MspI	CCGG	2 cut(s)	342, 597
MspR9I	CCNGG	4 cut(s)	115, 309, 342, 343
MunI	CAATTG	1 cut(s)	324
Mva1269I	GAATGC	1 cut(s)	404
MvaI	CCWGG	2 cut(s)	115, 309
MwoI	GCNNNNNNNGC	3 cut(s)	83, 326, 446
NciI	CCSGG	2 cut(s)	342, 343
NdeI	CATATG	1 cut(s)	294
NdeII	GATC	5 cut(s)	32, 39, 139, 195, 460
NlaIII	CATG	4 cut(s)	169, 317, 352, 362
NlaIV	GGNNCC	3 cut(s)	53, 129, 152
NmeAIII	GCCGAG	2 cut(s)	35, 355
NmuCI	GTSAC	1 cut(s)	373
NspI	RCATGY	1 cut(s)	317
PagI	TCATGA	1 cut(s)	165
PceI	AGGCCT	1 cut(s)	178
PciI	ACATGT	1 cut(s)	313
PctI	GAATGC	1 cut(s)	404
PfeI	GAWTC	1 cut(s)	95
PfoI	TCCNGGA	1 cut(s)	307
PpuMI	RGGWCCY	1 cut(s)	150
PscI	ACATGT	1 cut(s)	313
Psp5II	RGGWCCY	1 cut(s)	150
Psp6I	CCWGG	2 cut(s)	113, 307
PspFI	CCCAGC	1 cut(s)	88
PspGI	CCWGG	2 cut(s)	113, 307
PspN4I	GGNNCC	3 cut(s)	53, 129, 152
PspOMI	GGGCCC	1 cut(s)	51
PspPI	GGNCC	3 cut(s)	51, 52, 150
PspPPI	RGGWCCY	1 cut(s)	150
PsuI	RGATCY	1 cut(s)	139
RseI	CAYNNNNRTG	2 cut(s)	297, 353
SalI	GTCGAC	1 cut(s)	526
Sau3AI	GATC	5 cut(s)	32, 39, 139, 195, 460
Sau96I	GGNCC	3 cut(s)	51, 52, 150
ScrFI	CCNGG	4 cut(s)	115, 309, 342, 343
SduI	GDGCHC	3 cut(s)	55, 228, 580
SetI	ASST	6 cut(s)	75, 164, 210, 261, 516, 547
SfaNI	GCATC	2 cut(s)	100, 460
SfcI	CTRYAG	1 cut(s)	441
SinI	GGWCC	1 cut(s)	150
SmaI	CCCGGG	1 cut(s)	343
SmiMI	CAYNNNNRTG	2 cut(s)	297, 353
Sse9I	AATT	3 cut(s)	217, 324, 435
SseBI	AGGCCT	1 cut(s)	178
SspI	AATATT	1 cut(s)	383
SspMI	CTAG	2 cut(s)	174, 601
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	4 cut(s)	113, 307, 340, 341
StyI	CCWWGG	2 cut(s)	146, 173
TaaI	ACNGT	1 cut(s)	214
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	4 cut(s)	98, 194, 468, 527
TasI	AATT	3 cut(s)	217, 324, 435
TfiI	GAWTC	1 cut(s)	95
TscAI	CASTG	4 cut(s)	112, 292, 360, 400
TseFI	GTSAC	1 cut(s)	373
Tsp45I	GTSAC	1 cut(s)	373
TspDTI	ATGAA	4 cut(s)	154, 182, 375, 397
TspMI	CCCGGG	1 cut(s)	341
TspRI	CASTG	4 cut(s)	112, 292, 360, 400
VpaK11BI	GGWCC	1 cut(s)	150
XceI	RCATGY	1 cut(s)	317
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmaI	CCCGGG	1 cut(s)	341
XmaJI	CCTAGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	527
XspI	CTAG	2 cut(s)	174, 601
ZraI	GACGTC	1 cut(s)	73

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.